Configuring MPICH2 version 1.5 with '-prefix=/home/ling/mpich2-install' Running on system: Linux ling-desktop 3.5.0-17-generic #28-Ubuntu SMP Tue Oct 9 19:32:08 UTC 2012 i686 athlon i686 GNU/Linux checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc and cc understand -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking whether make supports nested variables... yes checking dependency style of gcc... gcc3 checking whether to enable maintainer-specific portions of Makefiles... yes checking for ar... ar checking the archiver (ar) interface... ar checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking whether make supports nested variables... (cached) yes checking for c++... c++ checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking dependency style of c++... gcc3 checking how to run the C++ preprocessor... c++ -E checking for ld used by c++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC -DPIC checking if c++ PIC flag -fPIC -DPIC works... yes checking if c++ static flag -static works... yes checking if c++ supports -c -o file.o... yes checking if c++ supports -c -o file.o... (cached) yes checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for ifort... no checking for pgf77... no checking for af77... no checking for xlf... no checking for frt... no checking for cf77... no checking for fort77... fort77 checking whether we are using the GNU Fortran 77 compiler... yes checking whether fort77 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking for fort77 option to produce PIC... -fPIC checking if fort77 PIC flag -fPIC works... yes checking if fort77 static flag -static works... yes checking if fort77 supports -c -o file.o... yes checking if fort77 supports -c -o file.o... (cached) yes checking whether the fort77 linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for ifort... no checking for pgf90... no checking for pathf90... no checking for pathf95... no checking for xlf90... no checking for xlf95... no checking for xlf2003... no checking for gfortran... no checking for f90... no checking for epcf90... no checking for f95... no checking for fort... no checking for lf95... no checking for g95... no checking for ifc... no checking for efc... no checking for gfc... no checking whether we are using the GNU Fortran compiler... no checking whether accepts -g... no configure: RUNNING PREREQ FOR ch3:nemesis checking for getpagesize... yes configure: ===== configuring src/mpl ===== configure: running /bin/bash /home/ling/libraries/mpich2-1.5/src/mpl/configure --disable-option-checking '--prefix=/home/ling/mpich2-install' --cache-file=/dev/null --srcdir=/home/ling/libraries/mpich2-1.5/src/mpl checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for ar... ar checking the archiver (ar) interface... ar checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking whether make supports nested variables... yes checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for variable argument list macro functionality... yes checking for gcov... gcov checking whether the compiler supports __typeof(variable)... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking valgrind.h usability... no checking valgrind.h presence... no checking for valgrind.h... no checking memcheck.h usability... no checking memcheck.h presence... no checking for memcheck.h... no checking valgrind/valgrind.h usability... no checking valgrind/valgrind.h presence... no checking for valgrind/valgrind.h... no checking valgrind/memcheck.h usability... no checking valgrind/memcheck.h presence... no checking for valgrind/memcheck.h... no checking helgrind.h usability... no checking helgrind.h presence... no checking for helgrind.h... no checking valgrind/helgrind.h usability... no checking valgrind/helgrind.h presence... no checking for valgrind/helgrind.h... no checking drd.h usability... no checking drd.h presence... no checking for drd.h... no checking valgrind/drd.h usability... no checking valgrind/drd.h presence... no checking for valgrind/drd.h... no checking whether the valgrind headers are broken or too old... yes checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for strncmp... yes checking whether strncmp needs a declaration... no checking for putenv... yes checking whether putenv needs a declaration... no checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating include/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing include/mplconfig.h commands config.status: creating include/mplconfig.h - prefix MPL for include/config.h defines configure: ===== done with src/mpl configure ===== configure: sourcing src/mpl/localdefs configure: ===== configuring src/openpa ===== configure: running /bin/bash /home/ling/libraries/mpich2-1.5/src/openpa/configure --disable-option-checking '--prefix=/home/ling/mpich2-install' --with-atomic-primitives=auto_allow_emulation --cache-file=/dev/null --srcdir=/home/ling/libraries/mpich2-1.5/src/openpa checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking for ar... ar checking the archiver (ar) interface... ar checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... no checking whether to build static libraries... yes checking whether make supports nested variables... yes checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking whether to enable assertions... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking atomic.h usability... no checking atomic.h presence... no checking for atomic.h... no checking intrin.h usability... no checking intrin.h presence... no checking for intrin.h... no checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for an ANSI C-conforming const... yes checking for pthread_create in -lpthread... yes checking for pthread_yield... yes checking if 100 threads can be run at once... yes checking size of void *... 4 checking size of int... 4 checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking if compiler rejects bogus asm statements... yes checking for support for gcc x86/x86_64 primitives... yes checking for support for gcc x86 primitives for pre-Pentium 4... yes checking for support for gcc ia64 primitives... no checking for support for gcc PowerPC atomics... no checking for support for gcc SiCortex atomics... no checking for support for gcc atomic intrinsics... yes checking for support for Windows NT atomic intrinsics... no checking for support for Sun atomic operations library... no checking whether to enable strict fairness checks... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating openpa.pc config.status: creating src/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing src/opa_config.h commands config.status: creating src/opa_config.h - prefix OPA for src/config.h defines configure: ===== done with src/openpa configure ===== sourcing /home/ling/libraries/mpich2-1.5/src/pm/hydra/mpich2prereq checking whether the compiler defines __func__... yes checking whether the compiler defines __FUNC__... no checking whether the compiler sets __FUNCTION__... yes checking whether C compiler accepts option -O2... yes checking whether C compiler option -O2 works with an invalid prototype program... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for type of weak symbol alias support... pragma weak checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute__ ((weak_import)) allowed... yes checking whether __attribute__((weak,alias(...))) allowed... no checking for multiple weak symbol support... yes checking for shared library (esp. rpath) characteristics of CC... done (results in src/env/cc_shlib.conf) checking whether Fortran 77 compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking how to get verbose linking output from fort77... -v checking for Fortran 77 libraries of fort77... -lf2c -lm checking whether fort77 accepts the FLIBS found by autoconf... yes checking whether gcc links with FLIBS found by autoconf... yes checking whether Fortran 77 and C objects are compatible... yes checking for linker for Fortran main program... Use Fortran to link programs checking for Fortran 77 name mangling... lower 2uscore checking for libraries to link Fortran main with C stdio routines... none checking whether Fortran init will work with C... yes checking for shared library (esp. rpath) characteristics of F77... done (results in src/env/f77_shlib.conf) checking whether Fortran 77 accepts ! for comments... yes checking for include directory flag for Fortran... -I checking for Fortran 77 flag for library directories... -L checking whether Fortran 77 compiler processes .F files with C preprocessor... yes checking whether fort77 allows mismatched arguments... yes checking whether the C++ compiler c++ can build an executable... yes checking whether C++ compiler works with string... yes checking whether the compiler supports exceptions... yes checking whether the compiler recognizes bool as a built-in type... yes checking whether the compiler implements namespaces... yes checking whether available... yes checking whether the compiler implements the namespace std... yes checking whether available... no checking for GNU g++ version... 4 . 7 checking for shared library (esp. rpath) characteristics of CXX... done (results in src/env/cxx_shlib.conf) checking whether C++ compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for perl... /usr/bin/perl checking for ar... ar checking for ranlib... ranlib checking for killall... killall checking whether install works... yes checking whether mkdir -p works... yes checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for bash... /bin/bash checking whether /bin/bash supports arrays... yes checking for doctext... false checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking whether byte ordering is bigendian... no checking whether C compiler allows unaligned doubles... yes checking whether gcc supports __func__... yes checking whether long double is supported... yes checking whether long long is supported... yes checking for max C struct integer alignment... four checking for max C struct floating point alignment... four checking for max C struct alignment of structs with doubles... four checking for max C struct floating point alignment with long doubles... four checking if alignment of structs with doubles is based on position... no checking if alignment of structs with long long ints is based on position... no checking if double alignment breaks rules, find actual alignment... no checking for alignment restrictions on pointers... int or better checking size of char... 1 checking size of unsigned char... 1 checking size of short... 2 checking size of unsigned short... 2 checking size of int... 4 checking size of unsigned int... 4 checking size of long... 4 checking size of unsigned long... 4 checking size of long long... 8 checking size of unsigned long long... 8 checking size of float... 4 checking size of double... 8 checking size of long double... 12 checking size of void *... 4 checking for ANSI C header files... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking size of wchar_t... 4 checking size of float_int... 8 checking size of double_int... 12 checking size of long_int... 8 checking size of short_int... 8 checking size of two_int... 8 checking size of long_double_int... 16 checking sys/bitypes.h usability... yes checking sys/bitypes.h presence... yes checking for sys/bitypes.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking complex.h usability... yes checking complex.h presence... yes checking for complex.h... yes checking size of _Bool... 1 checking size of float _Complex... 8 checking size of double _Complex... 16 checking size of long double _Complex... 24 checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking for size of Fortran type integer... 4 checking for size of Fortran type real... 4 checking for size of Fortran type double precision... 8 checking whether integer*1 is supported... yes checking whether integer*2 is supported... yes checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... no checking whether real*4 is supported... yes checking whether real*8 is supported... yes checking whether real*16 is supported... no checking for C type matching Fortran real... float checking for C type matching Fortran double... double checking for C type matching Fortran integer... int checking for size of MPI_Status... 20 checking for values of Fortran logicals... True is 1 and False is 0 checking for BSD/POSIX style global symbol lister... BSD style,/usr/bin/nm -g -B checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for multiple __attribute__((alias)) support... yes checking the minimum alignment of Fortran common block of 1 integers... unknown checking the minimum alignment of Fortran common block of 5 integers... unknown checking whether fort77 is a Fortran 90 compiler... no checking size of bool... 1 checking complex usability... yes checking complex presence... yes checking for complex... yes checking size of Complex... 8 checking size of DoubleComplex... 16 checking size of LongDoubleComplex... 24 checking for alignment restrictions on int64_t... no checking for alignment restrictions on int32_t... no checking size of MPIR_Bsend_data_t... 56 checking for gcc __asm__ and pentium cmpxchgl instruction... yes checking for gcc __asm__ and AMD x86_64 cmpxchgq instruction... no checking for gcc __asm__ and IA64 xchg4 instruction... no checking for gcov... gcov checking for ANSI C header files... (cached) yes checking for stdlib.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for sys/types.h... (cached) yes checking for string.h... (cached) yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stddef.h... (cached) yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking endian.h usability... yes checking endian.h presence... yes checking for endian.h... yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for sys/uio.h... yes checking for size_t... yes checking for setitimer... yes checking for alarm... yes checking for vsnprintf... yes checking for vsprintf... yes checking whether vsnprintf needs a declaration... no checking for strerror... yes checking for strncasecmp... yes checking whether strerror_r is declared... yes checking for strerror_r... yes checking whether strerror_r returns char *... no checking whether strerror_r needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for qsort... yes checking for va_copy... yes checking for variable argument list macro functionality... yes checking for working alloca.h... yes checking for alloca... yes checking for strdup... yes checking whether strdup needs a declaration... no checking for mkstemp... yes checking whether mkstemp needs a declaration... no checking for fdopen... yes checking whether fdopen needs a declaration... yes checking for putenv... yes checking whether putenv needs a declaration... no checking for clock_gettime... no checking for clock_getres... no checking for gethrtime... no checking for mach_absolute_time... no checking for gettimeofday... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking for pthread_yield... yes checking for pthread_key_create... yes checking for pthread_cleanup_push... no checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE_NP... yes checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE... yes checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK_NP... yes checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK... yes checking whether pthread_mutexattr_settype needs a declaration... no checking for thread local storage specifier... __thread checking for getpid... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for unistd.h... (cached) yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking for sched_yield... yes checking for yield... no checking for usleep... yes checking for sleep... yes checking for select... yes checking whether usleep needs a declaration... no checking for sched_setaffinity... yes checking for sched_getaffinity... yes checking for bindprocessor... no checking for thread_policy_set... no checking whether cpu_set_t available... yes checking whether the CPU_SET and CPU_ZERO macros are defined... no configure: RUNNING CONFIGURE FOR F90 CODE checking whether ln -s works... yes checking for extension for Fortran 90 programs... unknown! checking for the precision and range of reals... Error configure: WARNING: Failed to run program to determine the precision and range of reals checking for the precision and range of double precision... Error configure: WARNING: Failed to run program to determine the precision and range of double precision checking for the range of integer... Error configure: WARNING: Failed to run program to determine the range of integer checking for available integer kinds... Error configure: WARNING: Failed to run program to determine available integer models checking for available integer ranges... checking for unistd.h... (cached) yes checking for string.h... (cached) yes checking for stdlib.h... (cached) yes checking for sys/socket.h... (cached) yes checking for strings.h... (cached) yes checking for assert.h... (cached) yes checking for snprintf... (cached) yes checking whether snprintf needs a declaration... (cached) no checking for strncasecmp... (cached) yes checking for sys/types.h... (cached) yes checking for sys/param.h... (cached) yes checking for sys/socket.h... (cached) yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for library containing socket... none required checking for library containing gethostbyname... none required checking for socket... yes checking for setsockopt... yes checking for gethostbyname... yes checking whether socklen_t is defined (in sys/socket.h if present)... yes checking whether struct hostent contains h_addr_list... yes checking whether __attribute__ allowed... (cached) yes checking whether __attribute__((format)) allowed... (cached) yes configure: RUNNING CONFIGURE FOR CH3 DEVICE checking for assert.h... (cached) yes checking for limits.h... (cached) yes checking for string.h... (cached) yes checking for sys/types.h... (cached) yes checking for sys/uio.h... (cached) yes checking uuid/uuid.h usability... no checking uuid/uuid.h presence... no checking for uuid/uuid.h... no checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for unistd.h... (cached) yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking for sys/socket.h... (cached) yes checking for net/if.h... yes checking for pid_t... yes checking for inet_pton... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking for CFUUIDCreate... no checking for uuid_generate... no checking for time... yes checking for OpenPA atomic primitive availability... yes checking whether CPP accepts variable length argument lists... yes checking whether byte ordering is bigendian... (cached) no configure: RUNNING CONFIGURE FOR ch3:nemesis checking for net/if.h... yes checking for assert.h... (cached) yes checking for netdb.h... (cached) yes checking for unistd.h... (cached) yes checking for sched.h... (cached) yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking for sys/socket.h... 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See the Installation and users manual for instructions on testing and if necessary fixing this checking for library containing aio_write... -lrt checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking if aio.h exists and can be compiled... yes checking if sys/aio.h exists and can be compiled... no checking whether aio routines can be used... yes checking for obsolete two-argument aio_write... no checking for obsolete two-argument aio_suspend... no checking for aio_fildes member of aiocb structure... yes checking for aio_whence member of aiocb structure... no checking for aio_handle member of aiocb structure... no checking for aio_reqprio member of aiocb structure... yes checking for aio_sigevent member of aiocb structure... yes checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/mount.h usability... yes checking sys/mount.h presence... yes checking for sys/mount.h... yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking whether struct statfs properly defined... yes checking for f_fstypename member of statfs structure... no checking for sys/stat.h... 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(cached) yes checking for large file defines... yes setting SYSDEP_INC to checking for C/C++ restrict keyword... __restrict checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking for gcov... gcov setting CC to gcc setting F77 to fort77 setting TEST_CC to $(bindir)/mpicc setting TEST_F77 to $(bindir)/mpif77 setting CFLAGS to -O2 -DFORTRANDOUBLEUNDERSCORE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 setting USER_CFLAGS to setting USER_FFLAGS to checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating mpi2-other/info/Makefile config.status: creating mpi2-other/array/Makefile config.status: creating test/Makefile config.status: creating test/misc.c config.status: creating test/large_file.c config.status: creating test/runtests config.status: creating test-internal/Makefile config.status: creating util/romioinstall config.status: creating include/mpio.h config.status: creating include/mpiof.h config.status: creating mpi2-other/info/fortran/Makefile config.status: creating mpi2-other/array/fortran/Makefile config.status: creating test/fmisc.f config.status: creating test/fcoll_test.f config.status: creating test/pfcoll_test.f config.status: creating test/fperf.f config.status: creating adio/include/romioconf.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands configure: ===== done with src/mpi/romio configure ===== configure: sourcing src/mpi/romio/localdefs configure: ===== configuring src/pm/hydra ===== configure: running /bin/bash /home/ling/libraries/mpich2-1.5/src/pm/hydra/configure --disable-option-checking '--prefix=/home/ling/mpich2-install' --cache-file=/dev/null --srcdir=/home/ling/libraries/mpich2-1.5/src/pm/hydra checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking target system type... i686-pc-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for fgrep... /bin/grep -F checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking for style of include used by make... 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BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for mt... mt checking if mt is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... 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(cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for netdb.h... (cached) yes checking winsock2.h usability... no checking winsock2.h presence... no checking for winsock2.h... no checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for socket in -lsocket... no checking for gethostbyname in -lnsl... yes checking for gettimeofday... yes checking for time... yes checking for strdup... yes checking for sigaction... yes checking for signal... yes checking for usleep... yes checking for alloca... no checking for unsetenv... yes checking for strerror... yes checking for strsignal... yes checking for stat... yes checking for getifaddrs... yes checking for fcntl... yes checking for alarm... yes checking for isatty... yes checking for inet_ntop... yes checking for getpgid... yes checking for setsid... yes checking for environ in unistd.h... yes checking bootstrap server... user,ssh,rsh,fork,slurm,ll,lsf,sge,pbs,manual,persist checking tm.h usability... no checking tm.h presence... no checking for tm.h... no checking for tm_init in -ltorque... no checking process manager... pmiserv checking user interface... mpich checking desired processor topology libraries... hwloc checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes ### ### Configuring hwloc core ### checking hwloc building mode... embedded configure: hwloc builddir: /tmp/ling/mpich2-1.5/src/pm/hydra/tools/topo/hwloc/hwloc configure: hwloc srcdir: /home/ling/libraries/mpich2-1.5/src/pm/hydra/tools/topo/hwloc/hwloc configure: Detected VPATH build checking if want hwloc maintainer support... disabled (embedded mode) checking for hwloc directory prefix... tools/topo/hwloc/hwloc/ checking for hwloc symbol prefix... hwloc_ checking size of void *... 4 checking which OS support to include... Linux checking which CPU support to include... x86_32 checking size of unsigned long... (cached) 4 checking size of unsigned int... 4 checking for the C compiler vendor... gnu checking for __attribute__... yes checking for __attribute__(aligned)... yes checking for __attribute__(always_inline)... yes checking for __attribute__(cold)... yes checking for __attribute__(const)... yes checking for __attribute__(deprecated)... yes checking for __attribute__(format)... yes checking for __attribute__(hot)... yes checking for __attribute__(malloc)... yes checking for __attribute__(may_alias)... yes checking for __attribute__(no_instrument_function)... yes checking for __attribute__(nonnull)... yes checking for __attribute__(noreturn)... yes checking for __attribute__(packed)... yes checking for __attribute__(pure)... yes checking for __attribute__(sentinel)... yes checking for __attribute__(unused)... yes checking for __attribute__(warn_unused_result)... yes checking for __attribute__(weak_alias)... yes checking if gcc supports -fvisibility=hidden... yes checking whether to enable symbol visibility... yes (via -fvisibility=hidden) configure: WARNING: "-fvisibility=hidden" has been added to the hwloc CFLAGS checking whether the C compiler rejects function calls with too many arguments... yes checking whether the C compiler rejects function calls with too few arguments... yes checking for unistd.h... (cached) yes checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking for strings.h... (cached) yes checking for strncasecmp... yes checking whether function strncasecmp is declared... yes checking for strftime... yes checking for setlocale... yes checking for stdint.h... (cached) yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking for KAFFINITY... no checking for PROCESSOR_CACHE_TYPE... no checking for CACHE_DESCRIPTOR... no checking for LOGICAL_PROCESSOR_RELATIONSHIP... no checking for RelationProcessorPackage... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION... no checking for GROUP_AFFINITY... no checking for PROCESSOR_RELATIONSHIP... no checking for NUMA_NODE_RELATIONSHIP... no checking for CACHE_RELATIONSHIP... no checking for PROCESSOR_GROUP_INFO... no checking for GROUP_RELATIONSHIP... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... no checking for PSAPI_WORKING_SET_EX_BLOCK... no checking for PSAPI_WORKING_SET_EX_INFORMATION... no checking for main in -lgdi32... no checking for windows.h... (cached) no checking sys/lgrp_user.h usability... no checking sys/lgrp_user.h presence... no checking for sys/lgrp_user.h... no checking kstat.h usability... no checking kstat.h presence... no checking for kstat.h... no checking whether fabsf is declared... yes checking for fabsf in -lm... yes checking picl.h usability... no checking picl.h presence... no checking for picl.h... no checking whether _SC_NPROCESSORS_ONLN is declared... yes checking whether _SC_NPROCESSORS_CONF is declared... yes checking whether _SC_NPROC_ONLN is declared... no checking whether _SC_NPROC_CONF is declared... no checking whether _SC_LARGE_PAGESIZE is declared... no checking mach/mach_host.h usability... no checking mach/mach_host.h presence... no checking for mach/mach_host.h... no checking mach/mach_init.h usability... no checking mach/mach_init.h presence... no checking for mach/mach_init.h... no checking for sys/param.h... (cached) yes checking for sys/sysctl.h... yes checking whether CTL_HW is declared... no checking whether HW_NCPU is declared... no checking for sysctl... yes checking for sysctlbyname... no checking for pthread_t... yes checking whether function sched_setaffinity is declared... yes checking for old prototype of sched_setaffinity... no checking for working CPU_SET... yes checking for working CPU_SET_S... yes checking for working _syscall3... no checking for KERRIGHED... no checking for lib... no checking for bash... /bin/bash checking for ffs... yes checking whether function ffs is declared... yes checking for ffsl... yes checking whether function ffsl is declared... yes checking for fls... no checking for flsl... no checking for clz... no checking for clzl... no checking for openat... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for getpagesize... yes checking for memalign... yes checking for posix_memalign... yes checking whether getpagesize needs a declaration... no checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking for uname... yes checking pthread_np.h usability... no checking pthread_np.h presence... no checking for pthread_np.h... no checking whether pthread_setaffinity_np is declared... yes checking whether pthread_getaffinity_np is declared... yes checking for sched_setaffinity... yes checking for sys/cpuset.h... no checking for cpuset_setaffinity... no checking for library containing pthread_getthrds_np... no checking numaif.h usability... no checking numaif.h presence... no checking for numaif.h... no checking for PCI... no checking pci/pci.h usability... no checking pci/pci.h presence... no checking for pci/pci.h... no checking for LIBXML2... no checking for cpuid... no checking available processor topology libraries... hwloc checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking checkpointing library... blcr checking libcr.h usability... no checking libcr.h presence... no checking for libcr.h... no checking for cr_init in -lcr... no checking demux engine... poll,select,port checking for poll... yes checking for select... yes checking debugging support... none checking error checking... yes checking warnings... no checking profiling... yes checking libftb.h usability... no checking libftb.h presence... no checking for libftb.h... no checking for FTB_Connect in -lftb... no checking for strsignal... (cached) yes checking whether strsignal needs a declaration... no checking for sigaction... (cached) yes checking for signal... (cached) yes checking for sigset... yes checking for struct sigaction and sa_handler... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating tools/topo/hwloc/hwloc/Makefile config.status: creating tools/topo/hwloc/hwloc/include/Makefile config.status: creating tools/topo/hwloc/hwloc/src/Makefile config.status: creating Makefile config.status: creating tools/bootstrap/src/bsci_init.c config.status: creating hydra-doxygen.cfg config.status: creating include/hydra_config.h config.status: creating tools/topo/hwloc/hwloc/include/private/autogen/config.h config.status: creating tools/topo/hwloc/hwloc/include/hwloc/autogen/config.h config.status: executing depfiles commands config.status: executing libtool commands configure: ===== done with src/pm/hydra configure ===== configure: ===== configuring src/mpe2 ===== configure: running /bin/bash /home/ling/libraries/mpich2-1.5/src/mpe2/configure --disable-option-checking '--prefix=/home/ling/mpich2-install' --cache-file=/dev/null --srcdir=/home/ling/libraries/mpich2-1.5/src/mpe2 Configuring MPE Profiling System with '--disable-option-checking' '--prefix=/home/ling/mpich2-install' '--cache-file=/dev/null' '--srcdir=/home/ling/libraries/mpich2-1.5/src/mpe2' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/ling/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/mpi/romio/include' 'F77=fort77' 'FFLAGS= -O2' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH This MPE build is part of the MPICH2 build checking for leftover Makefiles in subpackages ... none checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether MPI_CC has been set ... gcc -I/home/ling/libraries/mpich2-1.5/src/include -I/tmp/ling/mpich2-1.5/src/include checking whether we are using the GNU Fortran 77 compiler... yes checking whether fort77 accepts -g... yes checking whether MPI_F77 has been set ... fort77 -I/home/ling/libraries/mpich2-1.5/src/include -I/tmp/ling/mpich2-1.5/src/include checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking how to get verbose linking output from fort77... -v checking for Fortran 77 libraries of fort77... -lrt -lpthread -lf2c -lm checking whether fort77 accepts the FLIBS found by autoconf... yes checking whether C can link with -lrt -lpthread -lf2c -lm... yes checking for linker for Fortran main programs... Use Fortran to link programs checking whether Fortran 77 and C objects are compatible... yes checking for Fortran 77 name mangling... lower doubleunderscore checking what libraries are needed to link Fortran programs with C routines that use stdio... none checking for Fortran 77 flag for library directories... -L checking for include directory flag for Fortran... -I checking how to run the C preprocessor... gcc -E checking whether ln -s works... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking for ranlib... ranlib checking whether install breaks libraries... no configure: creating ./config.status config.status: creating Makefile config.status: creating sbin/mpetestlink config.status: creating sbin/mpetestexec config.status: creating sbin/mpetestexeclog config.status: creating sbin/mpeinstall config.status: creating sbin/mpecheckinstall config.status: WARNING: '/home/ling/libraries/mpich2-1.5/src/mpe2/sbin/mpecheckinstall.in' seems to ignore the --datarootdir setting config.status: creating sbin/mpecheckbuild config.status: creating etc/mpe_help.conf config.status: creating etc/mpe_f77env.conf config.status: creating mpe_conf.h config.status: executing default-1 commands === configuring in src/misc (/tmp/ling/mpich2-1.5/src/mpe2/src/misc) configure: running /bin/bash /home/ling/libraries/mpich2-1.5/src/mpe2/src/misc/configure --disable-option-checking '--prefix=/home/ling/mpich2-install' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/ling/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/mpi/romio/include' 'F77=fort77' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=/home/ling/libraries/mpich2-1.5/src/mpe2/src/misc Configuring MPE Miscellaneous Library with '--disable-option-checking' '--prefix=/home/ling/mpich2-install' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/ling/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/mpi/romio/include' 'F77=fort77' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=/home/ling/libraries/mpich2-1.5/src/mpe2/src/misc' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for ar... ar checking for ranlib... ranlib checking whether gcc and cc understand -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for dbx... no checking for gdb... /usr/bin/gdb checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking for sysinfo... yes checking for uname... yes checking for gethostbyname... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking sys/systeminfo.h usability... no checking sys/systeminfo.h presence... no checking for sys/systeminfo.h... no checking for sys/types.h... (cached) yes checking for sighandler_t... no checking for kill... yes checking whether kill needs a declaration... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/dbxerr.c config.status: creating mpe_misc_conf.h === configuring in src/callstack (/tmp/ling/mpich2-1.5/src/mpe2/src/callstack) configure: running /bin/bash /home/ling/libraries/mpich2-1.5/src/mpe2/src/callstack/configure --disable-option-checking '--prefix=/home/ling/mpich2-install' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/ling/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/mpi/romio/include' 'F77=fort77' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=/home/ling/libraries/mpich2-1.5/src/mpe2/src/callstack Configuring MPE CallStack Library with '--disable-option-checking' '--prefix=/home/ling/mpich2-install' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/ling/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/mpi/romio/include' 'F77=fort77' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=/home/ling/libraries/mpich2-1.5/src/mpe2/src/callstack' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for ar... ar checking for ranlib... ranlib checking whether gcc and cc understand -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking whether defines backtrace_symbols_fd() ... yes checking if links with -Wl,--export-dynamic ... yes checking for fdopen... yes checking whether fdopen needs a declaration... no configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating include/mpe_callstack.h config.status: creating etc/mpe_callstack_ldflags.conf config.status: creating bin/bt2line config.status: creating mpe_callstack_conf.h config.status: executing default-1 commands === configuring in src/logging (/tmp/ling/mpich2-1.5/src/mpe2/src/logging) configure: running /bin/bash /home/ling/libraries/mpich2-1.5/src/mpe2/src/logging/configure --disable-option-checking '--prefix=/home/ling/mpich2-install' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/ling/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/mpi/romio/include' 'F77=fort77' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=/home/ling/libraries/mpich2-1.5/src/mpe2/src/logging Configuring MPE Logging Library and Tools with '--disable-option-checking' '--prefix=/home/ling/mpich2-install' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/ling/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/mpi/romio/include' 'F77=fort77' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=/home/ling/libraries/mpich2-1.5/src/mpe2/src/logging' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for ar... ar checking for ranlib... ranlib checking whether gcc and cc understand -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking whether byte ordering is bigendian... no checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for sys/types.h... (cached) yes checking sys/bitypes.h usability... yes checking sys/bitypes.h presence... yes checking for sys/bitypes.h... yes checking for sys/stat.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for header that defines C99 integer types, intXX_t ... checking for inttypes.h... (cached) yes checking whether defines the PRIdXX macros ... yes checking if can be behind system headers ... yes checking size of void *... 4 checking for address-sized integer ... CLOG_int32_t checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for gethostname... yes checking whether gethostname needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for mkstemp... yes checking whether mkstemp needs a declaration... no checking for srand48... yes checking whether srand48 needs a declaration... no checking for lrand48... yes checking whether lrand48 needs a declaration... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking for O_LARGEFILE for open() ... needs _LARGEFILE64_SOURCE checking for O_BINARY for open() ... no checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_mutex_lock in -lpthread... yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating include/clog_inttypes.h config.status: creating include/mpi_null.h config.status: creating include/mpe_log_thread.h config.status: creating etc/mpe_log.conf config.status: creating etc/mpe_nolog.conf config.status: creating etc/mpe_log_postlib.conf config.status: creating mpe_logging_conf.h === configuring in src/wrappers (/tmp/ling/mpich2-1.5/src/mpe2/src/wrappers) configure: running /bin/bash /home/ling/libraries/mpich2-1.5/src/mpe2/src/wrappers/configure --disable-option-checking '--prefix=/home/ling/mpich2-install' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/ling/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/mpi/romio/include' 'F77=fort77' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=/home/ling/libraries/mpich2-1.5/src/mpe2/src/wrappers Configuring MPE Wrapper Libraries For MPI with '--disable-option-checking' '--prefix=/home/ling/mpich2-install' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/ling/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/mpi/romio/include' 'F77=fort77' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=/home/ling/libraries/mpich2-1.5/src/mpe2/src/wrappers' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for ar... ar checking for ranlib... ranlib checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking for stdarg is correct... yes checking if compiler accepts prototypes ... yes checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for safe PMPI invocations ... no checking for the value of MPI_STATUS_SIZE ... 5 configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating etc/mpe_f77env.conf config.status: creating etc/mpe_mpilog.conf config.status: creating etc/mpe_mpitrace.conf config.status: creating mpe_wrappers_conf.h === configuring in src/graphics (/tmp/ling/mpich2-1.5/src/mpe2/src/graphics) configure: running /bin/bash /home/ling/libraries/mpich2-1.5/src/mpe2/src/graphics/configure --disable-option-checking '--prefix=/home/ling/mpich2-install' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/ling/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/mpi/romio/include' 'F77=fort77' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=/home/ling/libraries/mpich2-1.5/src/mpe2/src/graphics Configuring MPE X Graphics Library with '--disable-option-checking' '--prefix=/home/ling/mpich2-install' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/ling/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/mpi/romio/include' 'F77=fort77' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=/home/ling/libraries/mpich2-1.5/src/mpe2/src/graphics' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for ar... ar checking for ranlib... ranlib checking whether gcc and cc understand -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for X... no configure: WARNING: Could not find appropriate X windows libraries. MPE routines that make use of X11 graphics will NOT be built unless you put X windows libraries in your path and reconfigure! === configuring in src/collchk (/tmp/ling/mpich2-1.5/src/mpe2/src/collchk) configure: running /bin/bash /home/ling/libraries/mpich2-1.5/src/mpe2/src/collchk/configure --disable-option-checking '--prefix=/home/ling/mpich2-install' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/ling/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/mpi/romio/include' 'F77=fort77' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=/home/ling/libraries/mpich2-1.5/src/mpe2/src/collchk Configuring MPE Collective and Datatype Checking Library with '--disable-option-checking' '--prefix=/home/ling/mpich2-install' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/ling/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/mpi/romio/include' 'F77=fort77' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=/home/ling/libraries/mpich2-1.5/src/mpe2/src/collchk' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for ar... ar checking for ranlib... ranlib checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for an ANSI C-conforming const... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating etc/mpe_mpicheck.conf config.status: creating mpe_collchk_conf.h === configuring in src/slog2sdk (/tmp/ling/mpich2-1.5/src/mpe2/src/slog2sdk) configure: running /bin/bash /home/ling/libraries/mpich2-1.5/src/mpe2/src/slog2sdk/configure --disable-option-checking '--prefix=/home/ling/mpich2-install' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/ling/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/mpi/romio/include' 'F77=fort77' 'FFLAGS= -O2' --cache-file=/dev/null --srcdir=/home/ling/libraries/mpich2-1.5/src/mpe2/src/slog2sdk Configuring SLOG2SDK with '--disable-option-checking' '--prefix=/home/ling/mpich2-install' 'CC=gcc' 'CFLAGS= -O2' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/ling/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/mpl/include -I/home/ling/libraries/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/openpa/src -I/tmp/ling/mpich2-1.5/src/mpi/romio/include' 'F77=fort77' 'FFLAGS= -O2' '--cache-file=/dev/null' '--srcdir=/home/ling/libraries/mpich2-1.5/src/mpe2/src/slog2sdk' checking gnumake... yes using --no-print-directory checking BSD 4.4 make... no - whew checking OSF V3 make... no checking for virtual path format... VPATH checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking if CLASSPATH is set... no, good to go checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking for java in user's PATH... not found checking for java in user's PATH... not found configure: WARNING: No Java Virtual Machine can be found anywhere! MPE2: "src/misc" "src/callstack" "src/logging" "src/wrappers" "src/collchk" have been configured configure: ===== done with src/mpe2 configure ===== checking size of OPA_ptr_t... 4 checking the sizeof MPI_Offset... 8 configure: creating ./config.lt config.lt: creating libtool checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating src/binding/f90/mpif90model.h config.status: creating src/mpid/ch3/channels/nemesis/include/mpid_nem_net_module_defs.h config.status: creating src/mpid/ch3/channels/nemesis/src/mpid_nem_net_array.c config.status: creating Makefile config.status: creating examples/Makefile config.status: creating test/Makefile config.status: creating test/commands/Makefile config.status: creating src/include/mpich2info.h config.status: creating mpich2-doxygen config.status: creating src/include/glue_romio.h config.status: creating src/include/mpichtimer.h config.status: creating src/binding/cxx/mpicxx.h config.status: creating src/binding/f77/mpif.h config.status: creating src/binding/f77/setbotf.f config.status: creating src/binding/f77/setbot.c config.status: creating src/binding/f90/mpi_sizeofs.f90 config.status: creating src/binding/f90/mpi_base.f90 config.status: creating src/packaging/pkgconfig/mpich2.pc config.status: creating src/packaging/envmods/mpich2.module config.status: WARNING: '/home/ling/libraries/mpich2-1.5/src/packaging/envmods/mpich2.module.in' seems to ignore the --datarootdir setting config.status: creating src/env/mpixxx_opts.conf config.status: creating src/env/mpicc.sh config.status: creating src/env/mpicc.conf config.status: creating src/env/mpicc.bash config.status: creating src/env/mpicxx.sh config.status: creating src/env/mpicxx.conf config.status: creating src/env/mpicxx.bash config.status: creating src/env/mpif77.sh config.status: creating src/env/mpif77.conf config.status: creating src/env/mpif77.bash config.status: creating src/env/mpif90.sh config.status: creating src/env/mpif90.conf config.status: creating src/env/mpif90.bash config.status: creating src/env/parkill config.status: creating src/util/dbg/getfuncstack config.status: creating src/include/mpi.h config.status: creating doc/design/Makefile config.status: creating doc/installguide/Makefile config.status: creating doc/logging/Makefile config.status: creating doc/refman/Makefile config.status: creating doc/smpd/Makefile config.status: creating doc/userguide/Makefile config.status: creating doc/windev/Makefile config.status: creating test/commands/cmdtests config.status: creating src/include/mpichconf.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands config.status: executing default-4 commands config.status: executing default-5 commands === configuring in test/mpi (/tmp/ling/mpich2-1.5/test/mpi) configure: running /bin/bash /home/ling/libraries/mpich2-1.5/test/mpi/configure --disable-option-checking '--prefix=/home/ling/mpich2-install' --cache-file=/dev/null --srcdir=/home/ling/libraries/mpich2-1.5/test/mpi RUNNING CONFIGURE FOR MPI TESTS checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking for ranlib... ranlib checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking dependency style of gcc... gcc3 checking the archiver (ar) interface... ar checking whether make supports nested variables... (cached) yes checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking dependency style of gcc... (cached) gcc3 checking whether long double is supported... yes checking whether long long is supported... yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for grep that handles long lines and -e... /bin/grep checking for fgrep... /bin/grep -F checking how to run the C preprocessor... gcc -E checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for library containing pthread_create... -lpthread checking for library containing pthread_barrier_init... none required checking for pthread_create... yes checking for pthread_yield... yes checking for pthread_barrier_init... yes checking for pthread_barrier_wait... yes checking whether struct hostent contains h_addr_list... yes checking for getrusage... yes checking whether we are using the GNU Fortran 77 compiler... yes checking whether fort77 accepts -g... yes checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... no checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking how to get verbose linking output from fort77... -v checking for Fortran 77 libraries of fort77... -lpthread -lf2c -lm checking for Fortran 77 name mangling... lower 2uscore checking whether fort77 allows mismatched arguments... yes checking for Fortran libraries needed for getarg... none needed checking whether Fortran 77 supports Cray-style pointer... no checking for ifort... no checking for pgf90... no checking for pathf90... no checking for pathf95... no checking for xlf90... no checking for xlf95... no checking for xlf2003... no checking for gfortran... no checking for f90... no checking for epcf90... no checking for f95... no checking for fort... no checking for lf95... no checking for g95... no checking for ifc... no checking for efc... no checking for gfc... no checking whether we are using the GNU Fortran compiler... no checking whether accepts -g... no checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking dependency style of c++... gcc3 checking whether available... yes checking whether the compiler implements namespaces... yes checking whether the compiler implements the namespace std... yes checking whether MPI_2DOUBLE_COMPLEX is available... no checking whether MPI_2COMPLEX is available... no checking size of void *... 4 checking size of int... 4 checking size of long... 4 checking size of long long... 8 checking size of short... 2 checking for C integer type of address size... int checking for perl... /usr/bin/perl checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating maint/testmerge config.status: creating runtests config.status: creating checktests config.status: creating Makefile config.status: creating basic/Makefile config.status: creating attr/Makefile config.status: creating util/Makefile config.status: creating coll/Makefile config.status: creating comm/Makefile config.status: creating datatype/Makefile config.status: creating errhan/Makefile config.status: creating group/Makefile config.status: creating info/Makefile config.status: creating init/Makefile config.status: creating pt2pt/Makefile config.status: creating rma/Makefile config.status: creating spawn/Makefile config.status: creating topo/Makefile config.status: creating io/Makefile config.status: creating f77/Makefile config.status: creating f77/attr/Makefile config.status: creating f77/attr/attraints.h config.status: creating f77/pt2pt/attr1aints.h config.status: creating f77/ext/add1size.h config.status: creating f77/datatype/Makefile config.status: creating f77/datatype/typeaints.h config.status: creating f77/util/Makefile config.status: creating f77/coll/Makefile config.status: creating f77/comm/Makefile config.status: creating f77/topo/Makefile config.status: creating f77/init/Makefile config.status: creating f77/rma/addsize.h config.status: creating f77/pt2pt/Makefile config.status: creating f77/info/Makefile config.status: creating f77/spawn/Makefile config.status: creating f77/spawn/testlist config.status: creating f77/spawn/type1aint.h config.status: creating f77/rma/Makefile config.status: creating f77/ext/Makefile config.status: creating f77/ext/testlist config.status: creating f77/io/Makefile config.status: creating f77/io/iooffset.h config.status: creating f77/io/iodisp.h config.status: creating f77/io/ioaint.h config.status: creating f90/Makefile config.status: creating f90/attr/Makefile config.status: creating f90/datatype/Makefile config.status: creating f90/f90types/Makefile config.status: creating f90/util/Makefile config.status: creating f90/coll/Makefile config.status: creating f90/comm/Makefile config.status: creating f90/topo/Makefile config.status: creating f90/init/Makefile config.status: creating f90/pt2pt/Makefile config.status: creating f90/rma/Makefile config.status: creating f90/info/Makefile config.status: creating f90/spawn/Makefile config.status: creating f90/spawn/testlist config.status: creating f90/timer/Makefile config.status: creating f90/ext/Makefile config.status: creating f90/ext/testlist config.status: creating f90/io/Makefile config.status: creating f90/misc/Makefile config.status: creating cxx/Makefile config.status: creating cxx/util/Makefile config.status: creating cxx/attr/Makefile config.status: creating cxx/pt2pt/Makefile config.status: creating cxx/comm/Makefile config.status: creating cxx/coll/Makefile config.status: creating cxx/errhan/Makefile config.status: creating cxx/info/Makefile config.status: creating cxx/datatype/Makefile config.status: creating cxx/io/Makefile config.status: creating cxx/init/Makefile config.status: creating cxx/rma/Makefile config.status: creating cxx/spawn/Makefile config.status: creating threads/Makefile config.status: creating threads/pt2pt/Makefile config.status: creating threads/util/Makefile config.status: creating threads/comm/Makefile config.status: creating threads/init/Makefile config.status: creating threads/spawn/Makefile config.status: creating errors/Makefile config.status: creating errors/attr/Makefile config.status: creating errors/basic/Makefile config.status: creating errors/coll/Makefile config.status: creating errors/comm/Makefile config.status: creating errors/datatype/Makefile config.status: creating errors/faults/Makefile config.status: creating errors/group/Makefile config.status: creating errors/pt2pt/Makefile config.status: creating errors/rma/Makefile config.status: creating errors/spawn/Makefile config.status: creating errors/topo/Makefile config.status: creating errors/io/Makefile config.status: creating errors/cxx/Makefile config.status: creating errors/cxx/errhan/Makefile config.status: creating errors/cxx/io/Makefile config.status: creating errors/f77/Makefile config.status: creating errors/f90/Makefile config.status: creating manual/Makefile config.status: creating manual/manyconnect config.status: creating perf/Makefile config.status: creating testlist config.status: creating cxx/testlist config.status: creating f77/testlist config.status: creating f90/testlist config.status: creating threads/testlist config.status: creating errors/testlist config.status: creating errors/cxx/testlist config.status: creating include/mpitestconf.h config.status: executing depfiles commands config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands Configuration completed.