<html><body><div style="color:#000; background-color:#fff; font-family:tahoma, new york, times, serif;font-size:10pt"><div><span><br></span></div><br><div style="font-family: tahoma, new york, times, serif; font-size: 10pt;"><div style="font-family: times new roman, new york, times, serif; font-size: 12pt;"><div class="y_msg_container">Dear Jeff,<br><div id="yiv5452445974"><div><div style="color:#000;background-color:#fff;font-family:tahoma, new york, times, serif;font-size:10pt;"><br>I have compiled siesta with no problem. It is the Gen-Basis in the Utils that is making a mess for me.<br>The mpif90 is working fine executing the code.<br><br>Regards,<br><br><div><span><br></span></div><div><br></div> <div style="font-family:tahoma, new york, times, serif;font-size:10pt;"> <div style="font-family:times new roman, new york, times, serif;font-size:12pt;"> <div dir="ltr"> <hr size="1"> <font face="Arial" size="2"> <b><span
style="font-weight:bold;">From:</span></b> Jeff Hammond <jeff.science@gmail.com><br> <b><span style="font-weight:bold;">To:</span></b> discuss@mpich.org <br><b><span style="font-weight:bold;">Cc:</span></b> Hana Milani <hana.milani@yahoo.com> <br> <b><span style="font-weight:bold;">Sent:</span></b> Monday, July 8, 2013 7:52 PM<br> <b><span style="
font-weight:bold;">Subject:</span></b> Re: [mpich-discuss] "undefined references"<br> </font> </div> <div class="yiv5452445974y_msg_container"><br>I built Siesta against MPICH a week or two ago, albeit on BGQ<br>(<a rel="nofollow" target="_blank" href="https://wiki.alcf.anl.gov/parts/index.php/SIESTA">https://wiki.alcf.anl.gov/parts/index.php/SIESTA</a>), and had no issues.<br><br>What is the result of "mpif90 -show"? I wonder if you are mixing MPI<br>builds or otherwise have a problem with your F90 configuration.<br><br>Jeff<br><br>On Mon, Jul 8, 2013 at 9:33 AM, Pavan Balaji <<a rel="nofollow" ymailto="mailto:balaji@mcs.anl.gov" target="_blank" href="mailto:balaji@mcs.anl.gov">balaji@mcs.anl.gov</a>> wrote:<br>><br>> This doesn't look like an MPI error. Did you contact the authors of<br>> whatever package you are trying to compile?<br>><br>> -- Pavan<br>><br>> On 07/08/2013 08:25 AM, Hana Milani
wrote:<br>>><br>>> Hello,<br>>><br>>> I have compiled a
code (siesta) by mpich2, blacs, lapack, blas and<br>>> scalapack. It works fine under grid computation. But when I want to<br>>> "make" a utility, I receive the following errors:<br>>><br>>> [<a rel="nofollow" ymailto="mailto:Home@localhost" target="_blank" href="mailto:Home@localhost">Home@localhost</a> Gen-basis]$ make<br>>> /usr/local/bin/mpif90 -o gen-basis \<br>>> alloc.o basis_types.o precision.o recipes.o parallel.o<br>>> parsing.o xcmod.o basis_io.o chemical.o atm_transfer.o atm_types.o<br>>> atmparams.o old_atmfuncs.o radial.o io.o paste.o flib_spline.o<br>>> bessph.o m_filter.o basis_specs.o atom.o memoryinfo.o memory.o<br>>> periodic_table.o pseudopotential.o pxf.o dot.o xc.o atom_options.o<br>>> arw.o sys.o timer.o xml.o m_walltime.o gen-basis.o nag.o libfdf.a<br>>>
/home/Home/Packages/scalapack-2.0.2/libscalapack.a<br>>> /home/Home/Packages/BLACS/LIB/blacsCinit_MPI-LINUX-0.a<br>>> /home/Home/Packages/BLACS/LIB/blacsF77init_MPI-LINUX-0.a<br>>> /home/Home/Packages/BLACS/LIB/blacs_MPI-LINUX-0.a<br>>> /home/Home/Packages/lapack-3.4.2/liblapack.a<br>>> /home/Home/Packages/BLAS/blas_LINUX.a<br>>> alloc.o: In function `print_report':<br>>><br>>> /home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/alloc.F90:1705:<br>>> undefined reference to `__mpi__r8_s_MOD_mpi_reduce_t'<br>>><br>>> /home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/alloc.F90:1707:<br>>> undefined reference to `__mpi__r8_v_MOD_mpi_reduce_t'<br>>><br>>> /home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/alloc.F90:1711:<br>>> undefined reference to `__mpi__integer_s_MOD_mpi_bcast_t'<br>>><br>>>
/home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/alloc.F90:1723:<br>>> undefined reference to `__mpi__r8_s_MOD_mpi_recv_t'<br>>><br>>> /home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/alloc.F90:1718:<br>>> undefined reference to `__mpi__r8_s_MOD_mpi_send_t'<br>>> alloc.o: In function `__alloc_MOD_alloc_report':<br>>><br>>> /home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/alloc.F90:318:<br>>> undefined reference to `__mpi__integer_s_MOD_mpi_bcast_t'<br>>><br>>> /home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/alloc.F90:319:<br>>> undefined reference to `__mpi__integer_s_MOD_mpi_bcast_t'<br>>><br>>> /home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/alloc.F90:320:<br>>> undefined reference to `__mpi__character_s_MOD_mpi_bcast_t'<br>>> xcmod.o: In function `__xcmod_MOD_setxc':<br>>>
/home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/xcmod.F:136:<br>>> undefined<br>>> reference to `__mpi__integer_s_MOD_mpi_bcast_t'<br>>> /home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/xcmod.F:138:<br>>> undefined<br>>> reference to `__mpi__character_v_MOD_mpi_bcast_t'<br>>> /home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/xcmod.F:140:<br>>> undefined<br>>> reference to `__mpi__character_v_MOD_mpi_bcast_t'<br>>> /home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/xcmod.F:142:<br>>> undefined<br>>> reference to `__mpi__r8_v_MOD_mpi_bcast_t'<br>>> /home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/xcmod.F:144:<br>>> undefined<br>>> reference to `__mpi__r8_v_MOD_mpi_bcast_t'<br>>> memory.o: In function `printmemory_':<br>>>
/home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/memory.F:144:<br>>> undefined reference to `__mpi__integer_s_MOD_mpi_allreduce_t'<br>>> /home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/memory.F:167:<br>>> undefined reference to `__mpi__integer_sv_MOD_mpi_gather_t'<br>>> timer.o: In function `timer1_':<br>>> /home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/timer.F:117:<br>>> undefined<br>>> reference to `__mpi__r8_s_MOD_mpi_allreduce_t'<br>>> /home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/timer.F:164:<br>>> undefined<br>>> reference to `__mpi__r8_v_MOD_mpi_reduce_t'<br>>> /home/Home/Packages/siesta-TEST-3.2/Util/Gen-basis/../../Src/timer.F:139:<br>>> undefined<br>>> reference to `__mpi__r8_v_MOD_mpi_reduce_t'<br>>> collect2: error: ld returned 1 exit status<br>>> make: *** [gen-basis] Error 1<br>>><br>>>
I will be really grateful if you kindly help me to solve this problem.<br>>><br>>><br>>> _______________________________________________<br>>> discuss mailing list <a rel="nofollow" ymailto="mailto:discuss@mpich.org" target="_blank" href="mailto:discuss@mpich.org">discuss@mpich.org</a><br>>> To manage subscription options or unsubscribe:<br>>> <a rel="nofollow" target="_blank" href="https://lists.mpich.org/mailman/listinfo/discuss">https://lists.mpich.org/mailman/listinfo/discuss</a><br>>><br>><br>> --<br>> Pavan Balaji<br>> <a rel="nofollow" target="_blank" href="http://www.mcs.anl.gov/~balaji">http://www.mcs.anl.gov/~balaji</a><br>> _______________________________________________<br>> discuss mailing list <a rel="nofollow" ymailto="mailto:discuss@mpich.org" target="_blank" href="mailto:discuss@mpich.org">discuss@mpich.org</a><br>> To manage subscription options
or unsubscribe:<br>> <a rel="nofollow" target="_blank" href="https://lists.mpich.org/mailman/listinfo/discuss">https://lists.mpich.org/mailman/listinfo/discuss</a><br><br><br><br>-- <br>Jeff Hammond<br><a rel="nofollow" ymailto="mailto:jeff.science@gmail.com" target="_blank" href="mailto:jeff.science@gmail.com">jeff.science@gmail.com</a><br><br><br></div> </div> </div> </div></div></div><br><br></div> </div> </div> </div></body></html>