<div dir="ltr">Thank you very much. It solved my problem.<br></div><div class="gmail_extra"><br><br><div class="gmail_quote">On Tue, Jan 28, 2014 at 6:18 PM, Kenneth Raffenetti <span dir="ltr"><<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Oh, looks like the "mpi" alternative doesn't actually update the mpiexec link. Try running this:<br>
<br>
sudo update-alternatives --set mpirun /usr/bin/mpirun.mpich2<div class="im"><br>
<br>
On 01/28/2014 11:11 AM, ehsan saei wrote:<br>
</div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div class="im">
here is the result:<br>
/etc/alternatives/mpicxx ->/usr/bin/mpicxx.mpich2<br>
/etc/alternatives/mpiexec ->/usr/bin/mpiexec.openmpi<br>
<br>
<br>
On Tue, Jan 28, 2014 at 5:58 PM, Kenneth Raffenetti<br></div><div class="im">
<<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a> <mailto:<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a>>> wrote:<br>
<br>
To double check that the alternatives system did the right thing,<br>
can you can check the output of these commands and send us the results?<br>
<br>
ls -l /etc/alternatives/mpicxx<br>
ls -l /etc/alternatives/mpiexec<br>
<br>
<br>
On 01/28/2014 10:42 AM, ehsan saei wrote:<br>
<br>
Yes I recompiled but the result is the same as before.<br>
<br>
<br>
On Tue, Jan 28, 2014 at 5:36 PM, Kenneth Raffenetti<br>
<<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a> <mailto:<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a>><br></div><div class="im">
<mailto:<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a> <mailto:<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a>>><u></u>> wrote:<br>
<br>
Just making sure, you recompiled your program with mpicxx<br>
before<br>
running it again?<br>
<br>
<br>
On 01/28/2014 10:30 AM, ehsan saei wrote:<br>
<br>
Thanks but, still the same result<br>
<br>
<br>
On Tue, Jan 28, 2014 at 5:20 PM, Kenneth Raffenetti<br>
<<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a> <mailto:<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a>><br>
<mailto:<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a> <mailto:<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a>>><br></div><div><div class="h5">
<mailto:<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a><br>
<mailto:<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a>> <mailto:<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a><br>
<mailto:<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a>>><u></u>>__> wrote:<br>
<br>
Try running 'sudo update-alternatives --set mpi<br>
/usr/include/mpich2'. This tells the Ubuntu<br>
alternatives<br>
system to<br>
use mpich2 by default.<br>
<br>
Ken<br>
<br>
<br>
On 01/28/2014 10:15 AM, ehsan saei wrote:<br>
<br>
Yes you are right. I have both of them. Now<br>
what is the<br>
solution for<br>
this machine?<br>
<br>
<br>
On Tue, Jan 28, 2014 at 4:23 PM, Kenneth<br>
Raffenetti<br>
<<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a><br>
<mailto:<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a>> <mailto:<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a><br>
<mailto:<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a>>><br>
<mailto:<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a><br>
<mailto:<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a>> <mailto:<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a><br>
<mailto:<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a>>><u></u>><br>
<mailto:<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a><br>
<mailto:<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a>><br>
<mailto:<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a><br>
<mailto:<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a>>> <mailto:<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a><br>
<mailto:<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a>><br>
<mailto:<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a><br></div></div><div><div class="h5">
<mailto:<a href="mailto:raffenet@mcs.anl.gov" target="_blank">raffenet@mcs.anl.gov</a>>><u></u>>__>__> wrote:<br>
<br>
This problem usually comes from having a<br>
mix of<br>
openmpi and<br>
mpich<br>
both installed on the same machine. Is<br>
that the<br>
case? You<br>
can search<br>
for openmpi by running something like<br>
this from<br>
the command<br>
line:<br>
<br>
dpkg -l | grep openmpi<br>
<br>
<br>
On 01/28/2014 08:50 AM, ehsan saei wrote:<br>
<br>
for size the output is 1 independent<br>
from the<br>
number of<br>
processed that I<br>
declare with "mpiexec -n ..."<br>
<br>
<br>
On Tue, Jan 28, 2014 at 3:12 PM, Reuti<br>
<<a href="mailto:reuti@staff.uni-marburg.de" target="_blank">reuti@staff.uni-marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-marburg.de" target="_blank">reuti@staff.uni-<u></u>marburg.de</a>><br>
<mailto:<a href="mailto:reuti@staff.uni-__marburg.de" target="_blank">reuti@staff.uni-__<u></u>marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-marburg.de" target="_blank">reuti@staff.uni-<u></u>marburg.de</a>>><br>
<mailto:<a href="mailto:reuti@staff.uni-____marburg.de" target="_blank">reuti@staff.uni-____<u></u>marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-__marburg.de" target="_blank">reuti@staff.uni-__<u></u>marburg.de</a>><br>
<mailto:<a href="mailto:reuti@staff.uni-__marburg.de" target="_blank">reuti@staff.uni-__<u></u>marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-marburg.de" target="_blank">reuti@staff.uni-<u></u>marburg.de</a>>>><br>
<mailto:<a href="mailto:reuti@staff.uni-______marburg.de" target="_blank">reuti@staff.uni-______<u></u>marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-____marburg.de" target="_blank">reuti@staff.uni-____<u></u>marburg.de</a>><br>
<mailto:<a href="mailto:reuti@staff.uni-____marburg.de" target="_blank">reuti@staff.uni-____<u></u>marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-__marburg.de" target="_blank">reuti@staff.uni-__<u></u>marburg.de</a>>><br>
<mailto:<a href="mailto:reuti@staff.uni-____marburg.de" target="_blank">reuti@staff.uni-____<u></u>marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-__marburg.de" target="_blank">reuti@staff.uni-__<u></u>marburg.de</a>><br>
<mailto:<a href="mailto:reuti@staff.uni-__marburg.de" target="_blank">reuti@staff.uni-__<u></u>marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-marburg.de" target="_blank">reuti@staff.uni-<u></u>marburg.de</a>>>>><br>
<br></div></div>
<mailto:<a href="mailto:reuti@staff.uni-________marburg.de" target="_blank">reuti@staff.uni-______<u></u>__marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-______marburg.de" target="_blank">reuti@staff.uni-______<u></u>marburg.de</a>><div><div class="h5"><br>
<mailto:<a href="mailto:reuti@staff.uni-______marburg.de" target="_blank">reuti@staff.uni-______<u></u>marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-____marburg.de" target="_blank">reuti@staff.uni-____<u></u>marburg.de</a>>><br>
<br>
<mailto:<a href="mailto:reuti@staff.uni-______marburg.de" target="_blank">reuti@staff.uni-______<u></u>marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-____marburg.de" target="_blank">reuti@staff.uni-____<u></u>marburg.de</a>><br>
<mailto:<a href="mailto:reuti@staff.uni-____marburg.de" target="_blank">reuti@staff.uni-____<u></u>marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-__marburg.de" target="_blank">reuti@staff.uni-__<u></u>marburg.de</a>>>><br>
<br>
<br>
<br>
<mailto:<a href="mailto:reuti@staff.uni-______marburg.de" target="_blank">reuti@staff.uni-______<u></u>marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-____marburg.de" target="_blank">reuti@staff.uni-____<u></u>marburg.de</a>><br>
<mailto:<a href="mailto:reuti@staff.uni-____marburg.de" target="_blank">reuti@staff.uni-____<u></u>marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-__marburg.de" target="_blank">reuti@staff.uni-__<u></u>marburg.de</a>>><br>
<mailto:<a href="mailto:reuti@staff.uni-____marburg.de" target="_blank">reuti@staff.uni-____<u></u>marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-__marburg.de" target="_blank">reuti@staff.uni-__<u></u>marburg.de</a>><br>
<mailto:<a href="mailto:reuti@staff.uni-__marburg.de" target="_blank">reuti@staff.uni-__<u></u>marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-marburg.de" target="_blank">reuti@staff.uni-<u></u>marburg.de</a>>>>>>> wrote:<br>
<br>
Am 28.01.2014 um 11:18 schrieb<br>
ehsan saei:<br>
<br>
> I still have the problem with mpi<br>
<br>
In the program you cited you<br>
don't output the<br>
size. Can you<br>
output<br>
the size in addition?<br>
<br>
-- Reuti<br>
<br>
<br>
<br>
> On Mon, Jan 27, 2014 at 4:47<br>
PM, ehsan<br>
saei<br>
<<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a><br>
<mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a>><br>
<mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a><br>
<mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a>>> <mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a><br>
<mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a>><br>
<mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a><br>
<mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a>>><u></u>><br>
<mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a><br>
<mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a>><br>
<mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a><br>
<mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a>>> <mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a><br>
<mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a>><br>
<mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a><br>
<mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a>>><u></u>>__><br>
<mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a><br>
<mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a>><br>
<mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a> <mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a>>><br>
<mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a><br>
<mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a>> <mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a><br>
<mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a>>><u></u>><br>
<br>
<mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a><br>
<mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a>><br>
<mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a> <mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a>>><br>
<mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a><br>
<mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a>><br>
<mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a><br></div></div><div class="im">
<mailto:<a href="mailto:ehsan.saei@gmail.com" target="_blank">ehsan.saei@gmail.com</a>>><u></u>>__>__>__> wrote:<br>
> which mpicxx returns:<br>
/usr/bin/mpicxx<br>
><br>
><br>
> On Mon, Jan 27, 2014 at 4:44<br>
PM, Reuti<br>
<<a href="mailto:reuti@staff.uni-marburg.de" target="_blank">reuti@staff.uni-marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-marburg.de" target="_blank">reuti@staff.uni-<u></u>marburg.de</a>><br>
<mailto:<a href="mailto:reuti@staff.uni-__marburg.de" target="_blank">reuti@staff.uni-__<u></u>marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-marburg.de" target="_blank">reuti@staff.uni-<u></u>marburg.de</a>>><br>
<mailto:<a href="mailto:reuti@staff.uni-____marburg.de" target="_blank">reuti@staff.uni-____<u></u>marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-__marburg.de" target="_blank">reuti@staff.uni-__<u></u>marburg.de</a>><br>
<mailto:<a href="mailto:reuti@staff.uni-__marburg.de" target="_blank">reuti@staff.uni-__<u></u>marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-marburg.de" target="_blank">reuti@staff.uni-<u></u>marburg.de</a>>>><br>
<br>
<mailto:<a href="mailto:reuti@staff.uni-______marburg.de" target="_blank">reuti@staff.uni-______<u></u>marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-____marburg.de" target="_blank">reuti@staff.uni-____<u></u>marburg.de</a>><br>
<mailto:<a href="mailto:reuti@staff.uni-____marburg.de" target="_blank">reuti@staff.uni-____<u></u>marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-__marburg.de" target="_blank">reuti@staff.uni-__<u></u>marburg.de</a>>><br>
<mailto:<a href="mailto:reuti@staff.uni-____marburg.de" target="_blank">reuti@staff.uni-____<u></u>marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-__marburg.de" target="_blank">reuti@staff.uni-__<u></u>marburg.de</a>><br>
<mailto:<a href="mailto:reuti@staff.uni-__marburg.de" target="_blank">reuti@staff.uni-__<u></u>marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-marburg.de" target="_blank">reuti@staff.uni-<u></u>marburg.de</a>>>>><br>
<br></div>
<mailto:<a href="mailto:reuti@staff.uni-________marburg.de" target="_blank">reuti@staff.uni-______<u></u>__marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-______marburg.de" target="_blank">reuti@staff.uni-______<u></u>marburg.de</a>><div class="im"><br>
<mailto:<a href="mailto:reuti@staff.uni-______marburg.de" target="_blank">reuti@staff.uni-______<u></u>marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-____marburg.de" target="_blank">reuti@staff.uni-____<u></u>marburg.de</a>>><br>
<mailto:<a href="mailto:reuti@staff.uni-______marburg.de" target="_blank">reuti@staff.uni-______<u></u>marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-____marburg.de" target="_blank">reuti@staff.uni-____<u></u>marburg.de</a>><br>
<mailto:<a href="mailto:reuti@staff.uni-____marburg.de" target="_blank">reuti@staff.uni-____<u></u>marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-__marburg.de" target="_blank">reuti@staff.uni-__<u></u>marburg.de</a>>>><br>
<br>
<br>
<br></div><div><div class="h5">
<mailto:<a href="mailto:reuti@staff.uni-______marburg.de" target="_blank">reuti@staff.uni-______<u></u>marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-____marburg.de" target="_blank">reuti@staff.uni-____<u></u>marburg.de</a>><br>
<mailto:<a href="mailto:reuti@staff.uni-____marburg.de" target="_blank">reuti@staff.uni-____<u></u>marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-__marburg.de" target="_blank">reuti@staff.uni-__<u></u>marburg.de</a>>><br>
<mailto:<a href="mailto:reuti@staff.uni-____marburg.de" target="_blank">reuti@staff.uni-____<u></u>marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-__marburg.de" target="_blank">reuti@staff.uni-__<u></u>marburg.de</a>><br>
<mailto:<a href="mailto:reuti@staff.uni-__marburg.de" target="_blank">reuti@staff.uni-__<u></u>marburg.de</a><br>
<mailto:<a href="mailto:reuti@staff.uni-marburg.de" target="_blank">reuti@staff.uni-<u></u>marburg.de</a>>>>>>> wrote:<br>
> Am 27.01.2014 um 16:41<br>
schrieb ehsan saei:<br>
><br>
> > I compile the code with:<br>
mpicxx<br>
main.cpp<br>
> > and run it with: mpiexec -n<br>
8 ./a.out<br>
><br>
> Does `which mpicxx` resp. `which<br>
mpiexec` point<br>
to the<br>
intended<br>
target?<br>
><br>
> -- Reuti<br>
><br>
><br>
> > I use a single computer<br>
with dual<br>
core core i3<br>
> ><br>
> ><br>
> > On Mon, Jan 27, 2014 at<br>
4:39 PM,<br>
Wesley Bland<br>
<<a href="mailto:wbland@mcs.anl.gov" target="_blank">wbland@mcs.anl.gov</a><br>
<mailto:<a href="mailto:wbland@mcs.anl.gov" target="_blank">wbland@mcs.anl.gov</a>><br>
<mailto:<a href="mailto:wbland@mcs.anl.gov" target="_blank">wbland@mcs.anl.gov</a> <mailto:<a href="mailto:wbland@mcs.anl.gov" target="_blank">wbland@mcs.anl.gov</a>>><br>
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<mailto:<a href="mailto:wbland@mcs.anl.gov" target="_blank">wbland@mcs.anl.gov</a> <mailto:<a href="mailto:wbland@mcs.anl.gov" target="_blank">wbland@mcs.anl.gov</a>>>>><u></u>>__> wrote:<br>
> > The code is fine. The<br>
problem is<br>
most likely<br>
either<br>
the way<br>
you’re executing your code or<br>
the way you<br>
installed it. Can<br>
you tell<br>
us how you executed in on the<br>
command<br>
line to start?<br>
> ><br>
> > Thanks,<br>
> > Wesley<br>
> ><br>
> ><br>
> ><br>
> ><br>
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