<div dir="ltr"><div><div><div><div>thanks for your reply<br></div>in attach there is COAWST make file,<br></div>i become so appreciate if you help me<br></div>cheers<br></div>fereshte<br></div><div class="gmail_extra"><br><div class="gmail_quote">On Sun, Sep 14, 2014 at 1:40 AM, Gustavo Correa <span dir="ltr"><<a href="mailto:gus@ldeo.columbia.edu" target="_blank">gus@ldeo.columbia.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi Fereshteh<br>
<br>
<guess><br>
The model probably comes with a Makefile,<br>
or a configuration script, where you can choose<br>
the compiler (which presumably you chose as F77 or FC=mpif90, which is a good choice,<br>
not gfortran, which is not so good a choice).<br>
It may also have a INCLUDE variable where you can add the<br>
location of your mpif.h file.<br>
Something like this:<br>
<br>
INCLUDE= [whatever is already there] -I/home/fkomijani/program_install/mpich-3.0.4/include<br>
<br>
<br>
Normally mpif90 is able to locate the mpif.h include file and all needed mpi libraries as well,<br>
which is a big advantage over the barebones compiler (gfortran), as Ken and Junchao said.<br>
However, I've seen makefiles and build scripts that go a long way to strip off or override that capability,<br>
by redefining the compiler to be the one underlying the mpif90 wrapper (i.e go back to<br>
gfortran in your case), which is not a very good idea but happens.<br>
<br>
It is hard to tell exactly what is going on not knowing the Makefile, configure script,<br>
or the model code.<br>
Unfortunately the COAWST model is not readily available to download<br>
and check, requires the developer permission.<br>
If you post the Makefile or configure script things may become a little clearer.<br>
<br>
</guess><br>
<br>
My two cents,<br>
Gus Correa<br>
<span class="im HOEnZb"><br>
On Sep 13, 2014, at 10:23 AM, fereshteh komijani wrote:<br>
<br>
> After compiling my model (coawst) it gives me following<br>
> error :<br>
><br>
> mod_parallel.f90:17: Error: Can't open included file<br>
> 'mpif.h'<br>
><br>
> coaws's developer tell me :<br>
><br>
> *check your environment and see if the location of<br>
> mpif.h is in your<br>
> INCLUDE list*.<br>
><br>
> But I don't know what is its mean? Where and how I can<br>
> do that? Does<br>
> environment mean .bashrc?<br>
<br>
</span><div class="HOEnZb"><div class="h5">On Sep 13, 2014, at 10:23 AM, fereshteh komijani wrote:<br>
<br>
> thanks so much for your attention<br>
> i will check in again<br>
> cheers<br>
> fereshte<br>
><br>
> On Sat, Sep 13, 2014 at 6:30 PM, Junchao Zhang <<a href="mailto:jczhang@mcs.anl.gov">jczhang@mcs.anl.gov</a>> wrote:<br>
> As you can see, hello.f90 contains<br>
> include 'mpif.h'<br>
> and mpif90 found it and correctly compiled the code.<br>
><br>
> So, mpich installation is correct. You need to double check your code and compilation commands.<br>
><br>
> --Junchao Zhang<br>
><br>
> On Sat, Sep 13, 2014 at 8:41 AM, fereshteh komijani <<a href="mailto:fereshtehkomijani@gmail.com">fereshtehkomijani@gmail.com</a>> wrote:<br>
> i have created hello.F90 and after compiling, it gives<br>
><br>
> fkomijani@fk1:~/program_install/COAWST$ mpif90 -v -o hello hello.F90<br>
> mpif90 for MPICH version 3.0.4<br>
> Driving: gfortran -v -o hello hello.F90 -I/home/fkomijani/program_install/mpich-3.0.4/include -I/home/fkomijani/program_install/mpich-3.0.4/include -L/home/fkomijani/program_install/mpich-3.0.4/lib -lmpichf90 -lmpich -lopa -lmpl -lrt -lpthread -l gfortran -l m -shared-libgcc<br>
> Using built-in specs.<br>
> COLLECT_GCC=gfortran<br>
> COLLECT_LTO_WRAPPER=/usr/lib/gcc/i686-linux-gnu/4.6/lto-wrapper<br>
> Target: i686-linux-gnu<br>
> Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.6.3-1ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.6 --enable-shared --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --enable-objc-gc --enable-targets=all --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu<br>
> Thread model: posix<br>
> gcc version 4.6.3 (Ubuntu/Linaro 4.6.3-1ubuntu5)<br>
> COLLECT_GCC_OPTIONS='-v' '-o' 'hello' '-I' '/home/fkomijani/program_install/mpich-3.0.4/include' '-I' '/home/fkomijani/program_install/mpich-3.0.4/include' '-L/home/fkomijani/program_install/mpich-3.0.4/lib' '-shared-libgcc' '-mtune=generic' '-march=i686'<br>
> /usr/lib/gcc/i686-linux-gnu/4.6/f951 hello.F90 -cpp=/tmp/ccgJjtSb.f90 -quiet -v -I /home/fkomijani/program_install/mpich-3.0.4/include -I /home/fkomijani/program_install/mpich-3.0.4/include -imultilib . -imultiarch i386-linux-gnu hello.F90 -quiet -dumpbase hello.F90 -mtune=generic -march=i686 -auxbase hello -version -fintrinsic-modules-path /usr/lib/gcc/i686-linux-gnu/4.6/finclude -o /tmp/ccV5Pu7p.s<br>
> GNU Fortran (Ubuntu/Linaro 4.6.3-1ubuntu5) version 4.6.3 (i686-linux-gnu)<br>
> compiled by GNU C version 4.6.3, GMP version 5.0.2, MPFR version 3.1.0-p3, MPC version 0.9<br>
> GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072<br>
> ignoring nonexistent directory "/usr/local/include/i386-linux-gnu"<br>
> ignoring nonexistent directory "/usr/lib/gcc/i686-linux-gnu/4.6/../../../../i686-linux-gnu/include"<br>
> ignoring duplicate directory "/home/fkomijani/program_install/mpich-3.0.4/include"<br>
> #include "..." search starts here:<br>
> #include <...> search starts here:<br>
> /home/fkomijani/program_install/mpich-3.0.4/include<br>
> /usr/lib/gcc/i686-linux-gnu/4.6/finclude<br>
> /usr/lib/gcc/i686-linux-gnu/4.6/include<br>
> /usr/local/include<br>
> /usr/lib/gcc/i686-linux-gnu/4.6/include-fixed<br>
> /usr/include/i386-linux-gnu<br>
> /usr/include<br>
> End of search list.<br>
> GNU Fortran (Ubuntu/Linaro 4.6.3-1ubuntu5) version 4.6.3 (i686-linux-gnu)<br>
> compiled by GNU C version 4.6.3, GMP version 5.0.2, MPFR version 3.1.0-p3, MPC version 0.9<br>
> GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072<br>
> COLLECT_GCC_OPTIONS='-v' '-o' 'hello' '-I' '/home/fkomijani/program_install/mpich-3.0.4/include' '-I' '/home/fkomijani/program_install/mpich-3.0.4/include' '-L/home/fkomijani/program_install/mpich-3.0.4/lib' '-shared-libgcc' '-mtune=generic' '-march=i686'<br>
> as --32 -o /tmp/ccPO4WoE.o /tmp/ccV5Pu7p.s<br>
> Reading specs from /usr/lib/gcc/i686-linux-gnu/4.6/libgfortran.spec<br>
> rename spec lib to liborig<br>
> COLLECT_GCC_OPTIONS='-v' '-o' 'hello' '-I' '/home/fkomijani/program_install/mpich-3.0.4/include' '-I' '/home/fkomijani/program_install/mpich-3.0.4/include' '-L/home/fkomijani/program_install/mpich-3.0.4/lib' '-shared-libgcc' '-mtune=generic' '-march=i686'<br>
> COMPILER_PATH=/usr/lib/gcc/i686-linux-gnu/4.6/:/usr/lib/gcc/i686-linux-gnu/4.6/:/usr/lib/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/4.6/:/usr/lib/gcc/i686-linux-gnu/<br>
> LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/4.6/:/usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/4.6/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/4.6/../../../:/lib/:/usr/lib/<br>
> COLLECT_GCC_OPTIONS='-v' '-o' 'hello' '-I' '/home/fkomijani/program_install/mpich-3.0.4/include' '-I' '/home/fkomijani/program_install/mpich-3.0.4/include' '-L/home/fkomijani/program_install/mpich-3.0.4/lib' '-shared-libgcc' '-mtune=generic' '-march=i686'<br>
> /usr/lib/gcc/i686-linux-gnu/4.6/collect2 --sysroot=/ --build-id --no-add-needed --as-needed --eh-frame-hdr -m elf_i386 --hash-style=gnu -dynamic-linker /lib/ld-linux.so.2 -z relro -o hello /usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/crt1.o /usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/4.6/crtbegin.o -L/home/fkomijani/program_install/mpich-3.0.4/lib -L/usr/lib/gcc/i686-linux-gnu/4.6 -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/4.6/../../.. /tmp/ccPO4WoE.o -lmpichf90 -lmpich -lopa -lmpl -lrt -lpthread -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/i686-linux-gnu/4.6/crtend.o /usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/crtn.o<br>
><br>
><br>
> On Sat, Sep 13, 2014 at 5:28 PM, Junchao Zhang <<a href="mailto:jczhang@mcs.anl.gov">jczhang@mcs.anl.gov</a>> wrote:<br>
> "gfortran: error: hello.F90: No such file or directory"<br>
> You need to create hello.F90 as I said in the previous email.<br>
><br>
> "mpif90 -v -o hello hello.F90 ./coawst.bash"<br>
> Also, do not add ./coawst.bash<br>
><br>
><br>
><br>
> --Junchao Zhang<br>
><br>
> On Sat, Sep 13, 2014 at 7:15 AM, fereshteh komijani <<a href="mailto:fereshtehkomijani@gmail.com">fereshtehkomijani@gmail.com</a>> wrote:<br>
><br>
> fkomijani@fk1:~/program_install/COAWST$ mpif90 -v -o hello hello.F90 ./coawst.bash<br>
> mpif90 for MPICH version 3.0.4<br>
> Driving: gfortran -v -o hello hello.F90 ./coawst.bash -I/home/fkomijani/program_install/mpich-3.0.4/include -I/home/fkomijani/program_install/mpich-3.0.4/include -L/home/fkomijani/program_install/mpich-3.0.4/lib -lmpichf90 -lmpich -lopa -lmpl -lrt -lpthread -l gfortran -l m -shared-libgcc<br>
> gfortran: error: hello.F90: No such file or directory<br>
> Using built-in specs.<br>
> COLLECT_GCC=gfortran<br>
> COLLECT_LTO_WRAPPER=/usr/lib/gcc/i686-linux-gnu/4.6/lto-wrapper<br>
> Target: i686-linux-gnu<br>
> Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro 4.6.3-1ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.6 --enable-shared --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --enable-objc-gc --enable-targets=all --disable-werror --with-arch-32=i686 --with-tune=generic --enable-checking=release --build=i686-linux-gnu --host=i686-linux-gnu --target=i686-linux-gnu<br>
> Thread model: posix<br>
> gcc version 4.6.3 (Ubuntu/Linaro 4.6.3-1ubuntu5)<br>
><br>
><br>
> On Sat, Sep 13, 2014 at 4:33 PM, Junchao Zhang <<a href="mailto:jczhang@mcs.anl.gov">jczhang@mcs.anl.gov</a>> wrote:<br>
> That is strange.<br>
> Could you compile the following program with "mpif90 -v -o hello hello.F90" and paste the output?<br>
><br>
> ! hello.F90<br>
> program main<br>
> implicit none<br>
> include 'mpif.h'<br>
> integer :: ierr<br>
><br>
> call MPI_Init(ierr)<br>
> call MPI_Finalize(ierr)<br>
> end program<br>
><br>
><br>
> --Junchao Zhang<br>
><br>
> On Sat, Sep 13, 2014 at 6:24 AM, fereshteh komijani <<a href="mailto:fereshtehkomijani@gmail.com">fereshtehkomijani@gmail.com</a>> wrote:<br>
> sorry that is my fault, it is mpif.h<br>
><br>
> it seems that COAWST model is searching it, in -I/user/include directory not in<br>
> /home/fkomijani/program_install/mpich-3.0.4/include.<br>
> so how can i set mentined directory in system environment?<br>
><br>
> On Sat, Sep 13, 2014 at 3:45 PM, Junchao Zhang <<a href="mailto:jczhang@mcs.anl.gov">jczhang@mcs.anl.gov</a>> wrote:<br>
> The file name should be mpif.h, but not mpih.f.<br>
><br>
> On Sep 13, 2014 1:45 AM, "fereshteh komijani" <<a href="mailto:fereshtehkomijani@gmail.com">fereshtehkomijani@gmail.com</a>> wrote:<br>
> yes, /home/fkomijani/program_install/mpich-3.0.4/include contains mpih.f<br>
><br>
> On Sat, Sep 13, 2014 at 11:07 AM, Kenneth Raffenetti <<a href="mailto:raffenet@mcs.anl.gov">raffenet@mcs.anl.gov</a>> wrote:<br>
> If you 'ls /home/fkomijani/program_install/mpich-3.0.4/include' does it contain an mpif.h file? If not, your MPICH installation might be bad.<br>
><br>
> On 09/13/2014 03:24 PM, fereshteh komijani wrote:<br>
> gfortran -I/home/fkomijani/program_install/mpich-3.0.4/include<br>
> -I/home/fkomijani/program_install/mpich-3.0.4/include<br>
> -L/home/fkomijani/program_install/mpich-3.0.4/lib -lmpichf90 -lmpich<br>
> -lopa -lmpl -lrt -lpthread<br>
><br>
><br>
> On Sat, Sep 13, 2014 at 10:52 AM, Kenneth Raffenetti<br>
> <<a href="mailto:raffenet@mcs.anl.gov">raffenet@mcs.anl.gov</a> <mailto:<a href="mailto:raffenet@mcs.anl.gov">raffenet@mcs.anl.gov</a>>> wrote:<br>
><br>
> What is the output from 'mpif90 -show'?<br>
><br>
> On 09/13/2014 03:19 PM, fereshteh komijani wrote:<br>
><br>
> dear Kenneth Raffenetti<br>
> i am using mpif90 compiler.<br>
> if it is, why i have got that error?<br>
><br>
> On Sat, Sep 13, 2014 at 10:47 AM, Kenneth Raffenetti<br>
> <<a href="mailto:raffenet@mcs.anl.gov">raffenet@mcs.anl.gov</a> <mailto:<a href="mailto:raffenet@mcs.anl.gov">raffenet@mcs.anl.gov</a>><br>
> <mailto:<a href="mailto:raffenet@mcs.anl.gov">raffenet@mcs.anl.gov</a> <mailto:<a href="mailto:raffenet@mcs.anl.gov">raffenet@mcs.anl.gov</a>>>> wrote:<br>
><br>
> Are you using the mpif77 or mpif90 compiler wrappers to<br>
> build your<br>
> program? They will automatically add the location of mpif.h<br>
> to your<br>
> include path.<br>
><br>
> On 09/13/2014 02:56 PM, fereshteh komijani wrote:<br>
><br>
> Dear friends<br>
><br>
> recently I have installed mpich 3.0.4 in my system<br>
> (Ubuntu).<br>
><br>
> After compiling my model (coawst) it gives me following<br>
> error :<br>
><br>
> mod_parallel.f90:17: Error: Can't open included file<br>
> 'mpif.h'<br>
><br>
> coaws's developer tell me :<br>
><br>
> *check your environment and see if the location of<br>
> mpif.h is in your<br>
> INCLUDE list*.<br>
><br>
> But I don't know what is its mean? Where and how I can<br>
> do that? Does<br>
> environment mean .bashrc?<br>
><br>
> many thanks for any reply<br>
><br>
> fereshteh<br>
><br>
><br>
><br>
> --<br>
> ***Angel***<br>
> *__*<br>
><br>
><br>
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> ***Angel***<br>
> *__*<br>
><br>
><br>
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> ***Angel***<br>
> *__*<br>
><br>
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> **Angel**<br>
><br>
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> **Angel**<br>
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> --<br>
> **Angel**<br>
><br>
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</div></div></blockquote></div><br><br clear="all"><br>-- <br><div style="text-align:center"><font style="background-color:#cc33cc" color="#ffffff" size="4" face="comic sans ms,sans-serif"><strong>**Angel**</strong></font></div>
<div style="text-align:center"> </div>
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