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<body><div style="color:#000; background-color:#fff; font-family:HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;font-size:16px"><div><span></span></div><div>Thanks for the clarification Sangmin. It worked now. </div><div dir="ltr">Best regards,</div><div id="yui_3_16_0_1_1426586800139_4302" dir="ltr">Deniz<br> </div><div id="yui_3_16_0_1_1426586800139_4293" style="font-family: HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif; font-size: 16px;"> <div id="yui_3_16_0_1_1426586800139_4292" style="font-family: HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif; font-size: 16px;"> <div id="yui_3_16_0_1_1426586800139_4291" dir="ltr"> <hr size="1" id="yui_3_16_0_1_1426586800139_4301"> <font id="yui_3_16_0_1_1426586800139_4290" face="Arial" size="2"> <b><span style="font-weight: bold;">From:</span></b> "Seo, Sangmin" <sseo@anl.gov><br> <b><span style="font-weight: bold;">To:</span></b> Deniz DAL <dendal25@yahoo.com> <br><b><span style="font-weight: bold;">Cc:</span></b> "<discuss@mpich.org>" <discuss@mpich.org> <br> <b><span style="font-weight: bold;">Sent:</span></b> Tuesday, March 17, 2015 3:31 PM<br> <b><span style="font-weight: bold;">Subject:</span></b> Re: [mpich-discuss] ./a.out: error while loading shared libraries: libgfortran.so.3<br> </font> </div> <div class="y_msg_container" id="yui_3_16_0_1_1426586800139_4303"><br><div id="yiv7577867243"><div id="yui_3_16_0_1_1426586800139_4305">
<div class="yiv7577867243" id="yui_3_16_0_1_1426586800139_4304">'--disable-fortran' is a configure option. Can you try to configure with '--disable-fortran’ and rebuild MPICH?</div>
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<div class="yiv7577867243" id="yui_3_16_0_1_1426586800139_4307">Thanks,</div>
<div class="yiv7577867243" id="yui_3_16_0_1_1426586800139_4308">Sangmin</div>
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<blockquote class="yiv7577867243" id="yui_3_16_0_1_1426586800139_4311" type="cite">
<div class="qtdSeparateBR"><br><br></div><div class="yiv7577867243yqt5754618729" id="yiv7577867243yqt86660"><div class="yiv7577867243" id="yui_3_16_0_1_1426586800139_4310">On Mar 17, 2015, at 6:57 AM, Deniz DAL <<a class="yiv7577867243" href="mailto:dendal25@yahoo.com" target="_blank" rel="nofollow" shape="rect" ymailto="mailto:dendal25@yahoo.com">dendal25@yahoo.com</a>> wrote:</div>
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<div class="yiv7577867243" id="yiv7577867243yui_3_16_0_1_1426586800139_2449" dir="ltr">Hi again,</div>
<div class="yiv7577867243" id="yiv7577867243yui_3_16_0_1_1426586800139_2623" dir="ltr">My problem with 3.1.4 still continues. I think problem is related to mpicxx. When I try to compile my code using mpicxx from 1.3.2 and then run using mpicxx from 3.1.4, there isn't any problem. On
the other, if I use mpicxx and mpiexec from 3.1.4, mpiexec produces the following error as I said before:</div>
<div class="yiv7577867243" id="yiv7577867243yui_3_16_0_1_1426586800139_2647" dir="ltr">./a.out: error while loading shared libraries: libgfortran.so.3: cannot open shared object file: No such file or directory</div>
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<div class="yiv7577867243" id="yiv7577867243yui_3_16_0_1_1426586800139_2649" dir="ltr">Any help is greatly appreciated.</div>
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<div class="yiv7577867243" id="yiv7577867243yui_3_16_0_1_1426586800139_2652" dir="ltr">Thanks.</div>
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<div class="yiv7577867243" id="yiv7577867243yui_3_16_0_1_1426586800139_2654" dir="ltr">Deniz</div>
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<div class="yiv7577867243" id="yiv7577867243yui_3_16_0_1_1426586800139_2452">I had no such problem with mpich version 1.3.2. It happened after I installed the latest version. gfortran is installed.</div>
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<div class="yiv7577867243" id="yiv7577867243yui_3_16_0_1_1426586800139_2443">[<a class="yiv7577867243" id="yiv7577867243yui_3_16_0_1_1426586800139_2441" href="https://lists.mpich.org/mailman/listinfo/discuss" target="_blank" rel="nofollow" shape="rect"><font class="yiv7577867243" id="yiv7577867243yui_3_16_0_1_1426586800139_2440" color="#0066cc">ddal at admin</font></a> 01_MPI_Giris_Ornekler]$
which gfortran<br class="yiv7577867243" clear="none">
/usr/bin/gfortran[<a class="yiv7577867243" href="https://lists.mpich.org/mailman/listinfo/discuss" target="_blank" rel="nofollow" shape="rect"><font class="yiv7577867243" color="#0066cc">ddal at admin</font></a> 01_MPI_Giris_Ornekler]$ mpicxx 01_Hello_World.cpp --disable-fortran<br class="yiv7577867243" clear="none">
cc1plus: error: unrecognized command line option "-fdisable-fortran"<br class="yiv7577867243" clear="none">
<br class="yiv7577867243" clear="none">
From: "Bland, Wesley B." <<a class="yiv7577867243" id="yiv7577867243yui_3_16_0_1_1426586800139_2445" href="https://lists.mpich.org/mailman/listinfo/discuss" target="_blank" rel="nofollow" shape="rect"><font class="yiv7577867243" id="yiv7577867243yui_3_16_0_1_1426586800139_2444" color="#0066cc">wbland at anl.gov</font></a>><br class="yiv7577867243" clear="none">
To: Deniz DAL <<a class="yiv7577867243" id="yiv7577867243yui_3_16_0_1_1426586800139_2447" href="https://lists.mpich.org/mailman/listinfo/discuss" target="_blank" rel="nofollow" shape="rect"><font class="yiv7577867243" id="yiv7577867243yui_3_16_0_1_1426586800139_2446" color="#0066cc">dendal25 at yahoo.com</font></a>>; "<a class="yiv7577867243" id="yiv7577867243yui_3_16_0_1_1426586800139_2439" href="https://lists.mpich.org/mailman/listinfo/discuss" target="_blank" rel="nofollow" shape="rect"><font class="yiv7577867243" id="yiv7577867243yui_3_16_0_1_1426586800139_2438" color="#0066cc">discuss
at mpich.org</font></a>" <<a class="yiv7577867243" id="yiv7577867243yui_3_16_0_1_1426586800139_2478" href="https://lists.mpich.org/mailman/listinfo/discuss" target="_blank" rel="nofollow" shape="rect"><font class="yiv7577867243" id="yiv7577867243yui_3_16_0_1_1426586800139_2477" color="#0066cc">discuss at mpich.org</font></a>>
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Sent: Monday, March 16, 2015 4:41 PM<br class="yiv7577867243" clear="none">
Subject: Re: [mpich-discuss] ./a.out: error while loading shared libraries: libgfortran.so.3<br class="yiv7577867243" clear="none">
<br class="yiv7577867243" clear="none">
Do you have Fortran installed? Do you want to use Fortran? If not, you can recompile with —disable-fortran to remove the dependency.<br class="yiv7577867243" clear="none">
Thanks,Wesley<br class="yiv7577867243" clear="none">
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From: Deniz DAL<br class="yiv7577867243" clear="none">
Reply-To: Deniz DAL, "<a class="yiv7577867243" href="https://lists.mpich.org/mailman/listinfo/discuss" target="_blank" rel="nofollow" shape="rect"><font class="yiv7577867243" color="#0066cc">discuss at mpich.org</font></a>"<br class="yiv7577867243" clear="none">
Date: Monday, March 16, 2015 at 9:35 AM<br class="yiv7577867243" clear="none">
To: "<a class="yiv7577867243" href="https://lists.mpich.org/mailman/listinfo/discuss" target="_blank" rel="nofollow" shape="rect"><font class="yiv7577867243" color="#0066cc">discuss at mpich.org</font></a>"<br class="yiv7577867243" clear="none">
Subject: [mpich-discuss] ./a.out: error while loading shared libraries: libgfortran.so.3<br class="yiv7577867243" clear="none">
<br class="yiv7577867243" clear="none">
Hi,I installed mpich-v3.1.2 into my cluster but I am having problems. Although I can compile my parallel program, I can not run it. Below is the error message I get. Would you please help me to locate the problem. (I also added the following lines to my .bashrc
file after installation.)export PATH=/opt/progs/mpich2/v3.1.4/bin:$PATH<br class="yiv7577867243" clear="none">
export LD_LIBRARY_PATH=/opt/progs/mpich2/v3.1.4/lib:$LD_LIBRARY_PATHThanks.<br class="yiv7577867243" clear="none">
[<a class="yiv7577867243" href="https://lists.mpich.org/mailman/listinfo/discuss" target="_blank" rel="nofollow" shape="rect"><font class="yiv7577867243" color="#0066cc">ddal at admin</font></a> 01_MPI_Giris_Ornekler]$ mpicxx 01_Hello_World.cpp<br class="yiv7577867243" clear="none">
[<a class="yiv7577867243" id="yiv7577867243yui_3_16_0_1_1426586800139_2639" href="https://lists.mpich.org/mailman/listinfo/discuss" target="_blank" rel="nofollow" shape="rect"><font class="yiv7577867243" id="yiv7577867243yui_3_16_0_1_1426586800139_2638" color="#0066cc">ddal at admin</font></a> 01_MPI_Giris_Ornekler]$ mpiexec -f ~/cluster_hosts -n 5 ./a.out
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./a.out: error while loading shared libraries: libgfortran.so.3: cannot open shared object file: No such file or directory===================================================================================<br class="yiv7577867243" clear="none">
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES<br class="yiv7577867243" clear="none">
= PID 3873 RUNNING AT cn03<br class="yiv7577867243" clear="none">
= EXIT CODE: 127<br class="yiv7577867243" clear="none">
= CLEANING UP REMAINING PROCESSES<br class="yiv7577867243" clear="none">
= YOU CAN IGNORE THE BELOW CLEANUP MESSAGES<br class="yiv7577867243" clear="none">
===================================================================================<br class="yiv7577867243" clear="none">
[proxy:0:<a class="yiv7577867243" href="https://lists.mpich.org/mailman/listinfo/discuss" target="_blank" rel="nofollow" shape="rect"><font class="yiv7577867243" color="#0066cc">3 at cn04</font></a>] HYD_pmcd_pmip_control_cmd_cb (pm/pmiserv/pmip_cb.c:885): assert (!closed) failed<br class="yiv7577867243" clear="none">
[proxy:0:<a class="yiv7577867243" href="https://lists.mpich.org/mailman/listinfo/discuss" target="_blank" rel="nofollow" shape="rect"><font class="yiv7577867243" color="#0066cc">3 at cn04</font></a>] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status<br class="yiv7577867243" clear="none">
[proxy:0:<a class="yiv7577867243" id="yiv7577867243yui_3_16_0_1_1426586800139_2433" href="https://lists.mpich.org/mailman/listinfo/discuss" target="_blank" rel="nofollow" shape="rect"><font class="yiv7577867243" id="yiv7577867243yui_3_16_0_1_1426586800139_2432" color="#0066cc">3 at cn04</font></a>] main (pm/pmiserv/pmip.c:206): demux engine error waiting
for event<br class="yiv7577867243" clear="none">
[proxy:0:<a class="yiv7577867243" id="yiv7577867243yui_3_16_0_1_1426586800139_2435" href="https://lists.mpich.org/mailman/listinfo/discuss" target="_blank" rel="nofollow" shape="rect"><font class="yiv7577867243" id="yiv7577867243yui_3_16_0_1_1426586800139_2434" color="#0066cc">4 at cn05</font></a>] HYD_pmcd_pmip_control_cmd_cb (pm/pmiserv/pmip_cb.c:885):
assert (!closed) failed<br class="yiv7577867243" clear="none">
[proxy:0:<a class="yiv7577867243" id="yiv7577867243yui_3_16_0_1_1426586800139_2437" href="https://lists.mpich.org/mailman/listinfo/discuss" target="_blank" rel="nofollow" shape="rect"><font class="yiv7577867243" id="yiv7577867243yui_3_16_0_1_1426586800139_2436" color="#0066cc">4 at cn05</font></a>] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76):
callback returned error status<br class="yiv7577867243" clear="none">
[proxy:0:<a class="yiv7577867243" href="https://lists.mpich.org/mailman/listinfo/discuss" target="_blank" rel="nofollow" shape="rect"><font class="yiv7577867243" color="#0066cc">4 at cn05</font></a>] main (pm/pmiserv/pmip.c:206): demux engine error waiting for event<br class="yiv7577867243" clear="none">
[proxy:0:<a class="yiv7577867243" href="https://lists.mpich.org/mailman/listinfo/discuss" target="_blank" rel="nofollow" shape="rect"><font class="yiv7577867243" color="#0066cc">1 at cn02</font></a>] HYD_pmcd_pmip_control_cmd_cb (pm/pmiserv/pmip_cb.c:885): assert (!closed) failed<br class="yiv7577867243" clear="none">
[proxy:0:<a class="yiv7577867243" href="https://lists.mpich.org/mailman/listinfo/discuss" target="_blank" rel="nofollow" shape="rect"><font class="yiv7577867243" color="#0066cc">1 at cn02</font></a>] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status<br class="yiv7577867243" clear="none">
[proxy:0:<a class="yiv7577867243" href="https://lists.mpich.org/mailman/listinfo/discuss" target="_blank" rel="nofollow" shape="rect"><font class="yiv7577867243" color="#0066cc">1 at cn02</font></a>] main (pm/pmiserv/pmip.c:206): demux engine error waiting for event<br class="yiv7577867243" clear="none">
[proxy:0:<a class="yiv7577867243" href="https://lists.mpich.org/mailman/listinfo/discuss" target="_blank" rel="nofollow" shape="rect"><font class="yiv7577867243" color="#0066cc">0 at cn01</font></a>] HYD_pmcd_pmip_control_cmd_cb (pm/pmiserv/pmip_cb.c:885): assert (!closed) failed<br class="yiv7577867243" clear="none">
[proxy:0:<a class="yiv7577867243" href="https://lists.mpich.org/mailman/listinfo/discuss" target="_blank" rel="nofollow" shape="rect"><font class="yiv7577867243" color="#0066cc">0 at cn01</font></a>] HYDT_dmxu_poll_wait_for_event (tools/demux/demux_poll.c:76): callback returned error status<br class="yiv7577867243" clear="none">
[proxy:0:<a class="yiv7577867243" href="https://lists.mpich.org/mailman/listinfo/discuss" target="_blank" rel="nofollow" shape="rect"><font class="yiv7577867243" color="#0066cc">0 at cn01</font></a>] main (pm/pmiserv/pmip.c:206): demux engine error waiting for event<br class="yiv7577867243" clear="none">
[<a class="yiv7577867243" href="https://lists.mpich.org/mailman/listinfo/discuss" target="_blank" rel="nofollow" shape="rect"><font class="yiv7577867243" color="#0066cc">mpiexec at admin</font></a>] HYDT_bscu_wait_for_completion (tools/bootstrap/utils/bscu_wait.c:76): one of the processes terminated badly; aborting<br class="yiv7577867243" clear="none">
[<a class="yiv7577867243" href="https://lists.mpich.org/mailman/listinfo/discuss" target="_blank" rel="nofollow" shape="rect"><font class="yiv7577867243" color="#0066cc">mpiexec at admin</font></a>] HYDT_bsci_wait_for_completion (tools/bootstrap/src/bsci_wait.c:23): launcher returned error waiting for completion<br class="yiv7577867243" clear="none">
[<a class="yiv7577867243" href="https://lists.mpich.org/mailman/listinfo/discuss" target="_blank" rel="nofollow" shape="rect"><font class="yiv7577867243" color="#0066cc">mpiexec at admin</font></a>] HYD_pmci_wait_for_completion (pm/pmiserv/pmiserv_pmci.c:218): launcher returned error waiting for completion<br class="yiv7577867243" clear="none">
[<a class="yiv7577867243" href="https://lists.mpich.org/mailman/listinfo/discuss" target="_blank" rel="nofollow" shape="rect"><font class="yiv7577867243" color="#0066cc">mpiexec at admin</font></a>] main (ui/mpich/mpiexec.c:344): process manager error waiting for completion<br class="yiv7577867243" clear="none">
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