<meta http-equiv="Content-Type" content="text/html; charset=utf-8"><div dir="ltr">According to <a href="http://www.pgroup.com/userforum/viewtopic.php?t=539&view=previous&sid=50478c97090822511008dc30128ee908">http://www.pgroup.com/userforum/viewtopic.php?t=539&view=previous&sid=50478c97090822511008dc30128ee908</a> and <a href="http://www.linuxquestions.org/questions/linux-software-2/gcc-linker-error-hidden-symbol-%60stat'-in-usr-lib-libc_nonshared-a-stat-os-755962/">http://www.linuxquestions.org/questions/linux-software-2/gcc-linker-error-hidden-symbol-%60stat'-in-usr-lib-libc_nonshared-a-stat-os-755962/</a>, it looks like a glibc issue.<div><br></div><div>It might help to verify that the libc you are getting in this case is the right one and it works. You are getting one that appears designed for static linkage. Is there no /usr/lib64/libc.so on your machine?</div><div><br></div><div>Jeff</div></div><div class="gmail_extra"><br><div class="gmail_quote">On Tue, Jan 5, 2016 at 11:04 AM, Professor W P Jones <span dir="ltr"><<a href="mailto:w.jones@imperial.ac.uk" target="_blank">w.jones@imperial.ac.uk</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi Ken<br>
<br>
I can send you the Makefile and output but the code has run successfully using various other flavours of mpi and compilers - mpich2, openmpi, intel mpi, gfortran and ifort etc. The example program pi3f90.f90 produces a similar error:<br>
<br>
wpj@kelvin:f90 20 mpif90 pi3f90.f90<br>
Encountered 0 errors, 0 warnings in file pi3f90.f90.<br>
/usr/bin/ld: a.out: hidden symbol `lstat64' in /usr/lib64/libc_nonshared.a(lstat64.oS) is referenced by DSO<span class="im HOEnZb"><br>
/usr/bin/ld: final link failed: Nonrepresentable section on output<br>
<br></span><span class="im HOEnZb">
Regards<br>
Bill<br>
<br>
Professor W P Jones<br>
Department of Mechanical Engineering<br>
Imperial College London<br>
Exhibition Road<br>
London SW7 2AZ<br>
Tel: +44 (0)20 7594 7037/7033<br>
Mobile +44 (0)776 495 9702<br>
Fax: +44 (0)20 7594 5702<br>
E-mail: <a href="mailto:w.jones@imperial.ac.uk" target="_blank">w.jones@imperial.ac.uk</a><br>
web site: <a href="http://www.imperial.ac.uk/me" rel="noreferrer" target="_blank">http://www.imperial.ac.uk/me</a><br>
<br></span><div class="HOEnZb"><div class="h5">
On 05/01/16 18:08, Kenneth Raffenetti wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Hi,<br>
<br>
Do you have a make log from the application you are trying to build that you can share?<br>
<br>
Separately, did the example cpi application build successfully at the end of the MPICH build?<br>
<br>
Ken<br>
<br>
On 01/05/2016 02:44 AM, Professor W P Jones wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Hi<br>
<br>
I have successfully compiled and installed the version suggested.<br>
However when I attempt to to use make to compile and link it fails on<br>
the link step with the message:<br>
<br>
/usr/bin/ld: boffin: hidden symbol `lstat64' in<br>
/usr/lib64/libc_nonshared.a(lstat64.oS) is referenced by DSO<br>
/usr/bin/ld: final link failed: Nonrepresentable section on output<br>
make: [boffin] Error 1 (ignored)<br>
mv: cannot stat `./x86_64/boffin': No such file or directory<br>
make: *** [boffin] Error 1<br>
<br>
The log files generated in the compiled and install are attached and<br>
the output from mpiexec -info is:<br>
<br>
HYDRA build details:<br>
Version: 3.2<br>
Release Date: Mon Jan 4 00:00:40 CST 2016<br>
CC: icc<br>
CXX: icpc<br>
F77: lf95<br>
F90: lf95<br>
Configure options: '--disable-option-checking'<br>
'--prefix=/opt/mpich' '--enable-fortran=all' 'FC=lf95' 'F77=lf95'<br>
'--cache-file=/dev/null' '--srcdir=.' 'CC=icc' 'CFLAGS= -O2' 'LDFLAGS='<br>
'LIBS=-lpthread ' 'CPPFLAGS=<br>
-I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/mpl/include<br>
-I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/mpl/include<br>
-I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/openpa/src<br>
-I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/openpa/src<br>
-D_REENTRANT<br>
-I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/mpi/romio/include' <br>
'MPLLIBNAME=mpl'<br>
Process Manager: pmi<br>
Launchers available: ssh rsh fork slurm ll lsf<br>
sge manual persist<br>
Topology libraries available: hwloc<br>
Resource management kernels available: user slurm ll lsf sge pbs<br>
cobalt<br>
Checkpointing libraries available:<br>
Demux engines available: poll select<br>
<br>
Regards<br>
Bill<br>
<br>
Professor W P Jones<br>
Department of Mechanical Engineering<br>
Imperial College London<br>
Exhibition Road<br>
London SW7 2AZ<br>
Tel: +44 (0)20 7594 7037/7033<br>
Mobile +44 (0)776 495 9702<br>
Fax: +44 (0)20 7594 5702<br>
E-mail: <a href="mailto:w.jones@imperial.ac.uk" target="_blank">w.jones@imperial.ac.uk</a><br>
web site: <a href="http://www.imperial.ac.uk/me" rel="noreferrer" target="_blank">http://www.imperial.ac.uk/me</a><br>
<br>
On 04/01/16 15:55, Kenneth Raffenetti wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Can you try the latest nightly tarball on the MPICH website? I<br>
committed a patch last night that I believe addresses the issue. I<br>
don't have a system with the lf95 compiler to test, so I just went<br>
from the documentation.<br>
<br>
Ken<br>
<br>
On 12/27/2015 07:49 PM, Professor W P Jones wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Hi Pavan<br>
<br>
Here are all the existing log files.<br>
<br>
Regards<br>
Bill<br>
<br>
Professor W P Jones<br>
Department of Mechanical Engineering<br>
Imperial College London<br>
Exhibition Road<br>
London SW7 2AZ<br>
Tel: +44 (0)20 7594 7037/7033<br>
Mobile +44 (0)776 495 9702<br>
Fax: +44 (0)20 7594 5702<br>
E-mail: <a href="mailto:w.jones@imperial.ac.uk" target="_blank">w.jones@imperial.ac.uk</a><br>
web site: <a href="http://www.imperial.ac.uk/me" rel="noreferrer" target="_blank">http://www.imperial.ac.uk/me</a><br>
<br>
On 28/12/15 00:40, Balaji, Pavan wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Could you send us the log files listed in the README?<br>
<br>
<a href="http://git.mpich.org/mpich.git/blob/HEAD:/README.vin#l235" rel="noreferrer" target="_blank">http://git.mpich.org/mpich.git/blob/HEAD:/README.vin#l235</a><br>
<br>
-- Pavan<br>
<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
On Dec 27, 2015, at 5:34 AM, Professor W P Jones<br>
<<a href="mailto:w.jones@imperial.ac.uk" target="_blank">w.jones@imperial.ac.uk</a>> wrote:<br>
<br>
Hi<br>
<br>
I am trying to build MPICH-3.2 34 using Lahey/Fujitsu Linux64<br>
Fortran Express Release L8.10b and I obtain the following error:<br>
<br>
checking for Fortran 90 module output directory flag...<br>
configure: error: FCMODOUTFLAG could not be determined but is<br>
critical for the current Fortran build system<br>
<br>
Please can you advise how this can be fixed?<br>
<br>
Many thanks<br>
Bill Jones<br>
<br>
-- <br>
Professor W P Jones<br>
Department of Mechanical Engineering<br>
Imperial College London<br>
Exhibition Road<br>
London SW7 2AZ<br>
Tel: +44 (0)20 7594 7037/7033<br>
Mobile +44 (0)776 495 9702<br>
Fax: +44 (0)20 7594 5702<br>
E-mail: <a href="mailto:w.jones@imperial.ac.uk" target="_blank">w.jones@imperial.ac.uk</a><br>
web site: <a href="http://www.imperial.ac.uk/me" rel="noreferrer" target="_blank">http://www.imperial.ac.uk/me</a><br>
<br>
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</div></div></blockquote></div><br><br clear="all"><div><br></div>-- <br><div class="gmail_signature">Jeff Hammond<br><a href="mailto:jeff.science@gmail.com" target="_blank">jeff.science@gmail.com</a><br><a href="http://jeffhammond.github.io/" target="_blank">http://jeffhammond.github.io/</a></div>
</div>