Configuring MPICH version 3.2 Running on system: CYGWIN_NT-10.0 IE11WIN10 2.6.1(0.305/5/3) 2016-12-16 11:55 x86_64 Cygwin checking for icc... no checking for pgcc... no checking for xlc... no checking for xlC... no checking for pathcc... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.exe checking for suffix of executables... .exe checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking whether make supports nested variables... yes checking dependency style of gcc... gcc3 checking whether to enable maintainer-specific portions of Makefiles... yes checking for ar... ar checking the archiver (ar) interface... ar checking build system type... x86_64-unknown-cygwin checking host system type... x86_64-unknown-cygwin checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/x86_64-pc-cygwin/bin/ld.exe checking if the linker (/usr/x86_64-pc-cygwin/bin/ld.exe) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 8192 checking how to convert x86_64-unknown-cygwin file names to x86_64-unknown-cygwin format... func_convert_file_noop checking how to convert x86_64-unknown-cygwin file names to toolchain format... func_convert_file_noop checking for /usr/x86_64-pc-cygwin/bin/ld.exe option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... file_magic ^x86 archive import|^x86 DLL checking for dlltool... dlltool checking how to associate runtime and link libraries... func_cygming_dll_for_implib checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -DDLL_EXPORT -DPIC checking if gcc PIC flag -DDLL_EXPORT -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/x86_64-pc-cygwin/bin/ld.exe) supports shared libraries... yes checking whether -lc should be explicitly linked in... yes checking dynamic linker characteristics... Win32 ld.exe checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether make supports nested variables... (cached) yes checking for icpc... no checking for pgCC... no checking for xlC... no checking for pathCC... no checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/x86_64-pc-cygwin/bin/ld.exe checking if the linker (/usr/x86_64-pc-cygwin/bin/ld.exe) is GNU ld... yes checking whether the g++ linker (/usr/x86_64-pc-cygwin/bin/ld.exe) supports shared libraries... yes checking for g++ option to produce PIC... -DDLL_EXPORT -DPIC checking if g++ PIC flag -DDLL_EXPORT -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/x86_64-pc-cygwin/bin/ld.exe) supports shared libraries... yes checking dynamic linker characteristics... Win32 ld.exe checking how to hardcode library paths into programs... immediate checking for ifort... no checking for pgf90... no checking for pathf90... no checking for pathf95... no checking for xlf90... no checking for xlf95... no checking for xlf2003... no checking for gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -DDLL_EXPORT checking if gfortran PIC flag -DDLL_EXPORT works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/x86_64-pc-cygwin/bin/ld.exe) supports shared libraries... yes checking dynamic linker characteristics... Win32 ld.exe checking how to hardcode library paths into programs... immediate checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -DDLL_EXPORT checking if gfortran PIC flag -DDLL_EXPORT works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/x86_64-pc-cygwin/bin/ld.exe) supports shared libraries... yes checking dynamic linker characteristics... Win32 ld.exe checking how to hardcode library paths into programs... immediate checking hcoll/api/hcoll_api.h usability... no checking hcoll/api/hcoll_api.h presence... no checking for hcoll/api/hcoll_api.h... no checking for hcoll_init in -lhcoll... no configure: RUNNING PREREQ FOR ch3:nemesis configure: ===== configuring src/mpl ===== configure: running /bin/sh ./configure --disable-option-checking '--prefix=NONE' --disable-versioning --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for style of include used by make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.exe checking for suffix of executables... .exe checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking the archiver (ar) interface... ar checking build system type... x86_64-unknown-cygwin checking host system type... x86_64-unknown-cygwin checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/x86_64-pc-cygwin/bin/ld.exe checking if the linker (/usr/x86_64-pc-cygwin/bin/ld.exe) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 8192 checking how to convert x86_64-unknown-cygwin file names to x86_64-unknown-cygwin format... func_convert_file_noop checking how to convert x86_64-unknown-cygwin file names to toolchain format... func_convert_file_noop checking for /usr/x86_64-pc-cygwin/bin/ld.exe option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... file_magic ^x86 archive import|^x86 DLL checking for dlltool... dlltool checking how to associate runtime and link libraries... func_cygming_dll_for_implib checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -DDLL_EXPORT -DPIC checking if gcc PIC flag -DDLL_EXPORT -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/x86_64-pc-cygwin/bin/ld.exe) supports shared libraries... yes checking whether -lc should be explicitly linked in... yes checking dynamic linker characteristics... Win32 ld.exe checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether make supports nested variables... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for variable argument list macro functionality... yes checking for gcov... gcov checking whether the compiler supports __typeof(variable)... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking search.h usability... yes checking search.h presence... yes checking for search.h... yes checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking valgrind.h usability... no checking valgrind.h presence... no checking for valgrind.h... no checking memcheck.h usability... no checking memcheck.h presence... no checking for memcheck.h... no checking valgrind/valgrind.h usability... no checking valgrind/valgrind.h presence... no checking for valgrind/valgrind.h... no checking valgrind/memcheck.h usability... no checking valgrind/memcheck.h presence... no checking for valgrind/memcheck.h... no checking helgrind.h usability... no checking helgrind.h presence... no checking for helgrind.h... no checking valgrind/helgrind.h usability... no checking valgrind/helgrind.h presence... no checking for valgrind/helgrind.h... no checking drd.h usability... no checking drd.h presence... no checking for drd.h... no checking valgrind/drd.h usability... no checking valgrind/drd.h presence... no checking for valgrind/drd.h... no checking whether the valgrind headers are broken or too old... yes checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for strncmp... yes checking whether strncmp needs a declaration... no checking for putenv... yes checking whether putenv needs a declaration... no checking for strerror... yes checking whether strerror needs a declaration... no checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating include/config.h config.status: include/config.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands config.status: executing include/mplconfig.h commands config.status: creating include/mplconfig.h - prefix MPL for include/config.h defines config.status: include/mplconfig.h is unchanged configure: ===== done with src/mpl configure ===== configure: sourcing src/mpl/localdefs configure: ===== configuring src/openpa ===== configure: running /bin/sh ./configure --disable-option-checking '--prefix=NONE' --disable-versioning --with-atomic-primitives=auto_allow_emulation --cache-file=/dev/null --srcdir=. checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.exe checking for suffix of executables... .exe checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking the archiver (ar) interface... ar checking build system type... x86_64-unknown-cygwin checking host system type... x86_64-unknown-cygwin checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/x86_64-pc-cygwin/bin/ld.exe checking if the linker (/usr/x86_64-pc-cygwin/bin/ld.exe) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 8192 checking how to convert x86_64-unknown-cygwin file names to x86_64-unknown-cygwin format... func_convert_file_noop checking how to convert x86_64-unknown-cygwin file names to toolchain format... func_convert_file_noop checking for /usr/x86_64-pc-cygwin/bin/ld.exe option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... file_magic ^x86 archive import|^x86 DLL checking for dlltool... dlltool checking how to associate runtime and link libraries... func_cygming_dll_for_implib checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -DDLL_EXPORT -DPIC checking if gcc PIC flag -DDLL_EXPORT -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/x86_64-pc-cygwin/bin/ld.exe) supports shared libraries... yes checking whether -lc should be explicitly linked in... yes checking dynamic linker characteristics... Win32 ld.exe checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether make supports nested variables... (cached) yes checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) gcc3 checking whether to enable assertions... yes checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking atomic.h usability... no checking atomic.h presence... no checking for atomic.h... no checking intrin.h usability... yes checking intrin.h presence... yes checking for intrin.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for an ANSI C-conforming const... yes checking for pthread_create in -lpthread... yes checking for pthread_yield... yes checking if 100 threads can be run at once... yes checking size of void *... 8 checking size of int... 4 checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking if compiler rejects bogus asm statements... yes checking for support for gcc x86/x86_64 primitives... yes checking for support for gcc x86 primitives for pre-Pentium 4... yes checking for support for gcc ia64 primitives... no checking for support for gcc PowerPC atomics... no checking for support for gcc ARM atomics... no checking for support for gcc SiCortex atomics... no checking for support for gcc atomic intrinsics... yes checking for support for Windows NT atomic intrinsics... no checking for support for Sun atomic operations library... no checking whether to enable strict fairness checks... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating openpa.pc config.status: creating src/config.h config.status: src/config.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands config.status: executing src/opa_config.h commands config.status: creating src/opa_config.h - prefix OPA for src/config.h defines config.status: src/opa_config.h is unchanged configure: ===== done with src/openpa configure ===== sourcing /home/IEUser/mpich-3.2/src/pm/hydra/mpichprereq checking whether the compiler defines __func__... yes checking whether the compiler defines __FUNC__... no checking whether the compiler sets __FUNCTION__... yes checking whether C compiler accepts option -O2... yes checking whether C compiler option -O2 works with an invalid prototype program... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for type of weak symbol alias support... pragma weak accepted but does not work (probably creates two non-weak entries) no checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute__ ((weak_import)) allowed... yes checking whether __attribute__((weak,alias(...))) allowed... yes checking for shared library (esp. rpath) characteristics of CC... done (results in src/env/cc_shlib.conf) checking whether Fortran 77 compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0 -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0/../../../../x86_64-pc-cygwin/lib/../lib -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0/../../../../x86_64-pc-cygwin/lib -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0/../../.. -lgfortran -lquadmath -lm -lcygwin -ladvapi32 -lshell32 -luser32 checking whether gfortran accepts the FLIBS found by autoconf... yes checking whether gcc links with FLIBS found by autoconf... yes checking whether Fortran 77 and C objects are compatible... yes checking for linker for Fortran main program... Use Fortran to link programs checking for Fortran 77 name mangling... lower uscore checking for libraries to link Fortran main with C stdio routines... none checking whether Fortran init will work with C... yes checking for extension for Fortran 90 programs... f90 checking whether the Fortran 90 compiler (gfortran ) works... yes checking whether the Fortran 90 compiler (gfortran ) is a cross-compiler... no checking whether Fortran 90 compiler works with Fortran 77 compiler... yes checking for shared library (esp. rpath) characteristics of F77... done (results in src/env/f77_shlib.conf) checking whether Fortran 77 accepts ! for comments... yes checking for include directory flag for Fortran... -I checking for Fortran 77 flag for library directories... -L checking whether Fortran 77 compiler processes .F files with C preprocessor... yes checking whether gfortran allows mismatched arguments... yes checking for Fortran 2008 support... no checking for shared library (esp. rpath) characteristics of FC... done (results in src/env/fc_shlib.conf) checking whether the Fortran 90 compiler (gfortran ) works... yes checking whether the Fortran 90 compiler (gfortran ) is a cross-compiler... no checking for Fortran 90 module extension... mod checking for Fortran 90 module include flag... -I checking for Fortran 90 module output directory flag... -J checking whether Fortran 90 compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking whether Fortran 90 compiler processes .F90 files with C preprocessor... yes checking what libraries are needed to link Fortran90 programs with C routines that use stdio... none checking whether TRUE has been defined... no checking whether the C++ compiler g++ can build an executable... yes checking whether C++ compiler works with string... yes checking whether the compiler supports exceptions... yes checking whether the compiler recognizes bool as a built-in type... yes checking whether the compiler implements namespaces... yes checking whether available... yes checking whether the compiler implements the namespace std... yes checking whether available... no checking for GNU g++ version... 5 . 4 checking for shared library (esp. rpath) characteristics of CXX... done (results in src/env/cxx_shlib.conf) checking whether C++ compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for perl... /usr/bin/perl checking for ar... ar checking for ranlib... ranlib checking for killall... no checking whether install works... yes checking whether mkdir -p works... yes checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for bash... /usr/bin/bash checking whether /usr/bin/bash supports arrays... yes checking for doctext... false checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking if C compiler supports __builtin_expect... yes checking whether byte ordering is bigendian... no checking whether C compiler allows unaligned doubles... yes checking whether gcc supports __func__... yes checking whether long double is supported... yes checking whether long long is supported... yes checking for max C struct integer alignment... eight checking for max C struct floating point alignment... sixteen checking for max C struct alignment of structs with doubles... eight checking for max C struct floating point alignment with long doubles... sixteen configure: WARNING: Structures containing long doubles may be aligned differently from structures with floats or longs. MPICH does not handle this case automatically and you should avoid assumed extents for structures containing float types. checking if alignment of structs with doubles is based on position... no checking if alignment of structs with long long ints is based on position... no checking if double alignment breaks rules, find actual alignment... no checking for alignment restrictions on pointers... int or better checking size of char... 1 checking size of unsigned char... 1 checking size of short... 2 checking size of unsigned short... 2 checking size of int... 4 checking size of unsigned int... 4 checking size of long... 8 checking size of unsigned long... 8 checking size of long long... 8 checking size of unsigned long long... 8 checking size of float... 4 checking size of double... 8 checking size of long double... 16 checking size of void *... 8 checking for ANSI C header files... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking size of wchar_t... 2 checking size of float_int... 8 checking size of double_int... 16 checking size of long_int... 16 checking size of short_int... 8 checking size of two_int... 8 checking size of long_double_int... 32 checking sys/bitypes.h usability... no checking sys/bitypes.h presence... no checking for sys/bitypes.h... no checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking complex.h usability... yes checking complex.h presence... yes checking for complex.h... yes checking size of _Bool... 1 checking size of float _Complex... 8 checking size of double _Complex... 16 checking size of long double _Complex... 32 checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking for size of Fortran type integer... 4 checking for size of Fortran type real... 4 checking for size of Fortran type double precision... 8 checking whether integer*1 is supported... yes checking whether integer*2 is supported... yes checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... yes checking whether real*4 is supported... yes checking whether real*8 is supported... yes checking whether real*16 is supported... yes checking for C type matching Fortran real... float checking for C type matching Fortran double... double checking for C type matching Fortran integer... int checking for values of Fortran logicals... True is 1 and False is 0 checking for Fortran 90 integer kind for 8-byte integers... 8 checking for Fortran 90 integer kind for 4-byte integers... 4 checking if real*8 is supported in Fortran 90... yes checking size of bool... 1 checking complex usability... yes checking complex presence... yes checking for complex... yes checking size of Complex... 8 checking size of DoubleComplex... 16 checking size of LongDoubleComplex... 32 checking for alignment restrictions on int64_t... no checking for alignment restrictions on int32_t... no checking for gcov... gcov checking for ANSI C header files... (cached) yes checking for stdlib.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking for sys/types.h... (cached) yes checking for string.h... (cached) yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stddef.h... (cached) yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking endian.h usability... yes checking endian.h presence... yes checking for endian.h... yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for sys/uio.h... yes checking for size_t... yes checking for setitimer... yes checking for alarm... yes checking for vsnprintf... yes checking for vsprintf... yes checking whether vsnprintf needs a declaration... no checking for strerror... yes checking for strncasecmp... yes checking whether strerror_r is declared... yes checking for strerror_r... yes checking whether strerror_r returns char *... no checking whether strerror_r needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for qsort... yes checking for va_copy... yes checking for variable argument list macro functionality... yes checking for working alloca.h... yes checking for alloca... yes checking for strdup... yes checking whether strdup needs a declaration... no checking for mkstemp... yes checking whether mkstemp needs a declaration... no checking for fdopen... yes checking whether fdopen needs a declaration... yes checking for putenv... yes checking whether putenv needs a declaration... no checking for clock_gettime... yes checking for clock_getres... yes checking for gethrtime... no checking for mach_absolute_time... no checking for gettimeofday... yes checking for library containing clock_gettime... none required checking for library containing clock_getres... none required checking whether struct timespec is defined in time.h... yes checking for CLOCK_REALTIME defined in time.h... yes checking size of MPIR_Bsend_data_t... 96 checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking for pthread_yield... yes checking for pthread_key_create... yes checking for pthread_cleanup_push... no checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK_NP... no checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK... yes checking whether pthread_mutexattr_settype needs a declaration... no checking for thread local storage specifier... none checking for getpid... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for unistd.h... 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BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 8192 checking how to convert x86_64-unknown-cygwin file names to x86_64-unknown-cygwin format... func_convert_file_noop checking how to convert x86_64-unknown-cygwin file names to toolchain format... func_convert_file_noop checking for /usr/x86_64-pc-cygwin/bin/ld.exe option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... file_magic ^x86 archive import|^x86 DLL checking for dlltool... dlltool checking how to associate runtime and link libraries... func_cygming_dll_for_implib checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -DDLL_EXPORT -DPIC checking if gcc PIC flag -DDLL_EXPORT -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/x86_64-pc-cygwin/bin/ld.exe) supports shared libraries... yes checking whether -lc should be explicitly linked in... yes checking dynamic linker characteristics... Win32 ld.exe checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether make supports nested variables... (cached) yes Configuring with args dummy mt checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for architecture... x86_64 configure: WARNING: Unknown architecture x86_64... proceeding anyway ROMIO home directory is /home/IEUser/mpich-3.2/src/mpi/romio checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran option to produce PIC... -DDLL_EXPORT checking if gfortran PIC flag -DDLL_EXPORT works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/x86_64-pc-cygwin/bin/ld.exe) supports shared libraries... yes checking dynamic linker characteristics... 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Win32 ld.exe checking how to hardcode library paths into programs... immediate checking for long long... yes checking size of long long... 8 checking for memalign... yes checking Fortran external names Fortran externals have a trailing underscore and are lowercase checking for inline... inline checking for size_t... yes checking for ssize_t... yes checking for off_t... yes checking how to run the C preprocessor... gcc -E checking for unistd.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for sys/types.h... 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(cached) 8 checking for extension for Fortran 90 programs... f90 checking for Fortran 90 KIND parameter for 8-byte integers... 8 checking that we can use integer*8 to declare MPI_DISPLACMENT_CURRENT... yes Overriding Array test for MPICH checking for type of weak symbol alias support... pragma weak accepted but does not work (probably creates two non-weak entries) no checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute__ ((weak_import)) allowed... yes checking whether __attribute__((weak,alias(...))) allowed... yes checking whether struct flock compatible with MPI_Offset... yes checking for pvfs2-config... notfound checking configured file systems... testfs ufs nfs configure: WARNING: File locks may not work with NFS. See the Installation and users manual for instructions on testing and if necessary fixing this checking for library containing aio_write... no checking for library containing pthread_create... none required checking for library containing aio_write... (cached) no checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking aio.h usability... no checking aio.h presence... no checking for aio.h... no checking sys/aio.h usability... no checking sys/aio.h presence... no checking for sys/aio.h... no checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/mount.h usability... yes checking sys/mount.h presence... yes checking for sys/mount.h... yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking for statfs... yes checking whether struct statfs properly defined... yes checking for f_fstypename member of statfs structure... no checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for unistd.h... 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(cached) yes checking for large file defines... no checking whether pwrite is declared... yes checking for strerror... yes checking for doctext... false checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for lstat... yes checking whether lstat needs a declaration... no checking for readlink... yes checking whether readlink needs a declaration... no checking for fsync... yes checking whether fsync needs a declaration... no checking for ftruncate... yes checking whether ftruncate needs a declaration... no checking for lseek64... no checking for usleep... yes checking whether usleep needs a declaration... no checking for unistd.h... (cached) yes checking for large file defines... none setting SYSDEP_INC to checking for C/C++ restrict keyword... __restrict checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking for gcov... gcov setting CC to gcc setting F77 to gfortran setting TEST_CC to $(bindir)/mpicc setting TEST_F77 to $(bindir)/mpifort setting CFLAGS to -O2 -DFORTRANUNDERSCORE -DHAVE_ROMIOCONF_H setting USER_CFLAGS to setting USER_FFLAGS to checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating mpi2-other/info/Makefile config.status: creating mpi2-other/array/Makefile config.status: creating test/Makefile config.status: creating test/misc.c config.status: creating test/large_file.c config.status: creating test/runtests config.status: creating test-internal/Makefile config.status: creating util/romioinstall config.status: creating include/mpio.h config.status: creating include/mpiof.h config.status: creating mpi2-other/info/fortran/Makefile config.status: creating mpi2-other/array/fortran/Makefile config.status: creating test/fmisc.f config.status: creating test/fcoll_test.f config.status: creating test/pfcoll_test.f config.status: creating test/fperf.f config.status: creating adio/include/romioconf.h config.status: adio/include/romioconf.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands configure: ===== done with src/mpi/romio configure ===== configure: sourcing src/mpi/romio/localdefs configure: ===== configuring src/pm/hydra ===== configure: running /bin/sh ./configure --disable-option-checking '--prefix=NONE' --cache-file=/dev/null --srcdir=. checking build system type... x86_64-unknown-cygwin checking host system type... x86_64-unknown-cygwin checking target system type... x86_64-unknown-cygwin checking whether the C compiler works... yes checking for C compiler default output file name... a.exe checking for suffix of executables... .exe checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for fgrep... /usr/bin/grep -F checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking whether make supports nested variables... yes checking dependency style of gcc... gcc3 checking the archiver (ar) interface... ar checking whether make supports nested variables... (cached) yes checking for perl... /usr/bin/perl checking for doctext... false checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking size of unsigned long... 8 checking for size_t... yes checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for ld used by gcc... /usr/x86_64-pc-cygwin/bin/ld.exe checking if the linker (/usr/x86_64-pc-cygwin/bin/ld.exe) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 8192 checking how to convert x86_64-unknown-cygwin file names to x86_64-unknown-cygwin format... func_convert_file_noop checking how to convert x86_64-unknown-cygwin file names to toolchain format... func_convert_file_noop checking for /usr/x86_64-pc-cygwin/bin/ld.exe option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... file_magic ^x86 archive import|^x86 DLL checking for dlltool... dlltool checking how to associate runtime and link libraries... func_cygming_dll_for_implib checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -DDLL_EXPORT -DPIC checking if gcc PIC flag -DDLL_EXPORT -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/x86_64-pc-cygwin/bin/ld.exe) supports shared libraries... yes checking whether -lc should be explicitly linked in... yes checking dynamic linker characteristics... Win32 ld.exe checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for variable argument list macro functionality... yes checking whether __attribute__ allowed... yes checking whether __attribute__((format)) allowed... yes checking whether the compiler defines __func__... yes checking whether the compiler defines __FUNC__... no checking whether the compiler sets __FUNCTION__... yes checking for doxygen... no checking for gcov... gcov checking for ANSI C header files... (cached) yes checking for unistd.h... (cached) yes checking for strings.h... (cached) yes checking for sys/types.h... (cached) yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for sys/stat.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking winsock2.h usability... no checking winsock2.h presence... yes configure: WARNING: winsock2.h: present but cannot be compiled configure: WARNING: winsock2.h: check for missing prerequisite headers? configure: WARNING: winsock2.h: see the Autoconf documentation configure: WARNING: winsock2.h: section "Present But Cannot Be Compiled" configure: WARNING: winsock2.h: proceeding with the compiler's result checking for winsock2.h... no checking windows.h usability... yes checking windows.h presence... yes checking for windows.h... yes checking for library containing socket... none required checking for library containing gethostbyname... none required checking for library containing hstrerror... none required checking for gettimeofday... yes checking for time... yes checking for strdup... yes checking for sigaction... yes checking for signal... yes checking for usleep... yes checking for alloca... no checking for unsetenv... yes checking for strerror... yes checking for strsignal... yes checking for stat... yes checking for fcntl... yes checking for alarm... yes checking for isatty... yes checking for inet_ntop... yes checking for getpgid... yes checking for setsid... yes checking for killpg... yes checking for hstrerror... yes checking whether hstrerror needs a declaration... no checking whether gettimeofday needs a declaration... no checking whether getpgid needs a declaration... no checking whether killpg needs a declaration... no checking for environ in unistd.h... yes checking bootstrap server... user,ssh,rsh,fork,slurm,ll,lsf,sge,pbs,cobalt,manual,persist checking tm.h usability... no checking tm.h presence... no checking for tm.h... no checking for tm_init in -ltorque... no checking process manager... pmiserv checking user interface... mpich checking desired processor topology libraries... hwloc checking for pkg-config... no checking for X... no ### ### Configuring hwloc core ### checking hwloc building mode... embedded configure: hwloc builddir: /home/IEUser/mpich-3.2/src/pm/hydra/tools/topo/hwloc/hwloc configure: hwloc srcdir: /home/IEUser/mpich-3.2/src/pm/hydra/tools/topo/hwloc/hwloc checking for hwloc version... 1.11.0rc3-git checking if want hwloc maintainer support... disabled (embedded mode) checking for hwloc directory prefix... tools/topo/hwloc/hwloc/ checking for hwloc symbol prefix... hwloc_ checking size of void *... 8 checking which OS support to include... Windows checking which CPU support to include... x86_64 checking size of unsigned long... (cached) 8 checking size of unsigned int... 4 checking for the C compiler vendor... gnu checking for __attribute__... yes checking for __attribute__(aligned)... yes checking for __attribute__(always_inline)... yes checking for __attribute__(cold)... yes checking for __attribute__(const)... yes checking for __attribute__(deprecated)... yes checking for __attribute__(format)... yes checking for __attribute__(hot)... yes checking for __attribute__(malloc)... yes checking for __attribute__(may_alias)... yes checking for __attribute__(no_instrument_function)... yes checking for __attribute__(nonnull)... yes checking for __attribute__(noreturn)... yes checking for __attribute__(packed)... yes checking for __attribute__(pure)... yes checking for __attribute__(sentinel)... yes checking for __attribute__(unused)... yes checking for __attribute__(warn_unused_result)... yes checking for __attribute__(weak_alias)... yes checking whether to enable symbol visibility... no (disabled) checking whether the C compiler rejects function calls with too many arguments... yes checking whether the C compiler rejects function calls with too few arguments... yes checking for unistd.h... (cached) yes checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking for strings.h... (cached) yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for strncasecmp... yes checking whether function strncasecmp is declared... yes checking for strftime... yes checking for setlocale... yes checking for stdint.h... (cached) yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking for KAFFINITY... yes checking for PROCESSOR_CACHE_TYPE... yes checking for CACHE_DESCRIPTOR... yes checking for LOGICAL_PROCESSOR_RELATIONSHIP... yes checking for RelationProcessorPackage... no checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION... yes checking for GROUP_AFFINITY... yes checking for PROCESSOR_RELATIONSHIP... yes checking for NUMA_NODE_RELATIONSHIP... yes checking for CACHE_RELATIONSHIP... yes checking for PROCESSOR_GROUP_INFO... yes checking for GROUP_RELATIONSHIP... yes checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... yes checking for PSAPI_WORKING_SET_EX_BLOCK... no checking for PSAPI_WORKING_SET_EX_INFORMATION... no checking for main in -lgdi32... yes checking for windows.h... (cached) yes checking sys/lgrp_user.h usability... no checking sys/lgrp_user.h presence... no checking for sys/lgrp_user.h... no checking kstat.h usability... no checking kstat.h presence... no checking for kstat.h... no checking whether fabsf is declared... yes checking for fabsf in -lm... yes checking picl.h usability... no checking picl.h presence... no checking for picl.h... no checking whether _SC_NPROCESSORS_ONLN is declared... yes checking whether _SC_NPROCESSORS_CONF is declared... yes checking whether _SC_NPROC_ONLN is declared... no checking whether _SC_NPROC_CONF is declared... no checking whether _SC_PAGESIZE is declared... yes checking whether _SC_PAGE_SIZE is declared... yes checking whether _SC_LARGE_PAGESIZE is declared... no checking mach/mach_host.h usability... no checking mach/mach_host.h presence... no checking for mach/mach_host.h... no checking mach/mach_init.h usability... no checking mach/mach_init.h presence... no checking for mach/mach_init.h... no checking for sys/param.h... (cached) yes checking for sys/sysctl.h... no checking whether strtoull is declared... yes checking whether getprogname is declared... yes checking whether getexecname is declared... no checking whether GetModuleFileName is declared... yes checking for program_invocation_name... yes checking for __progname... yes checking whether function sched_setaffinity is declared... no checking for working CPU_SET... no checking for working CPU_SET_S... no checking for working _syscall3... no checking for KERRIGHED... cannot check without pkg-config checking for lib... no checking for bash... /bin/sh checking for ffs... yes checking whether function ffs is declared... yes checking for ffsl... yes checking whether function ffsl is declared... yes checking for fls... no checking for flsl... no checking for clz... no checking for clzl... no checking for openat... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for getpagesize... yes checking for memalign... yes checking for posix_memalign... yes checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking for uname... yes checking pthread_np.h usability... no checking pthread_np.h presence... no checking for pthread_np.h... no checking whether pthread_setaffinity_np is declared... no checking whether pthread_getaffinity_np is declared... no checking for sched_setaffinity... no checking for sys/cpuset.h... no checking for cpuset_setaffinity... no checking for library containing pthread_getthrds_np... no checking for cpuset_setid... no checking numaif.h usability... no checking numaif.h presence... no checking for numaif.h... no checking libudev.h usability... no checking libudev.h presence... no checking for libudev.h... no checking for PCIACCESS... cannot check without pkg-config checking pciaccess.h usability... no checking pciaccess.h presence... no checking for pciaccess.h... no checking CL/cl_ext.h usability... no checking CL/cl_ext.h presence... no checking for CL/cl_ext.h... no checking cuda.h usability... no checking cuda.h presence... no checking for cuda.h... no checking cuda_runtime_api.h usability... no checking cuda_runtime_api.h presence... no checking for cuda_runtime_api.h... no checking nvml.h usability... no checking nvml.h presence... no checking for nvml.h... no checking X11/Xlib.h usability... no checking X11/Xlib.h presence... no checking for X11/Xlib.h... no configure: WARNING: X11 not found; GL disabled checking NVCtrl/NVCtrl.h usability... no checking NVCtrl/NVCtrl.h presence... no checking for NVCtrl/NVCtrl.h... no checking for LIBXML2... cannot check without pkg-config checking for x86 cpuid... yes checking for pthread_mutex_lock... yes checking if plugin support is enabled... no checking components to build statically... noos xml synthetic custom xml_nolibxml windows x86 checking components to build as plugins... checking available processor topology libraries... checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking checkpointing library... blcr checking libcr.h usability... no checking libcr.h presence... no checking for libcr.h... no checking for cr_init in -lcr... no checking demux engine... poll,select,port checking for poll... yes checking for select... yes checking debugging support... none checking error checking... yes checking warnings... no checking profiling... yes checking libftb.h usability... no checking libftb.h presence... no checking for libftb.h... no checking for FTB_Connect in -lftb... no checking for strsignal... (cached) yes checking whether strsignal needs a declaration... no checking for sigaction... (cached) yes checking for signal... (cached) yes checking for sigset... yes checking for struct sigaction and sa_handler... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating tools/topo/hwloc/hwloc/Makefile config.status: creating tools/topo/hwloc/hwloc/include/Makefile config.status: creating tools/topo/hwloc/hwloc/src/Makefile config.status: creating Makefile config.status: creating tools/bootstrap/src/bsci_init.c config.status: creating hydra-doxygen.cfg config.status: creating include/hydra_config.h config.status: creating tools/topo/hwloc/hwloc/include/private/autogen/config.h config.status: tools/topo/hwloc/hwloc/include/private/autogen/config.h is unchanged config.status: creating tools/topo/hwloc/hwloc/include/hwloc/autogen/config.h config.status: tools/topo/hwloc/hwloc/include/hwloc/autogen/config.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands configure: ===== done with src/pm/hydra configure ===== checking size of OPA_ptr_t... 8 checking the sizeof MPI_Offset... 8 checking whether the Fortran Offset type works with Fortran 77... yes checking whether the Fortran Offset type works with Fortran 90... yes checking for size of MPI_Status... 20 checking for BSD/POSIX style global symbol lister... BSD style,/usr/bin/nm -g -B checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for multiple __attribute__((alias)) support... yes checking the minimum alignment of Fortran common block of 1 integers... 4 checking the minimum alignment of Fortran common block of 5 integers... 4, too small! reset to 32 configure: WARNING: The ch3 device did not set the maximum size of an error string, 512 being used. configure: creating ./config.lt config.lt: creating libtool checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating src/binding/fortran/use_mpi/mpif90model.h config.status: creating src/mpid/ch3/channels/nemesis/include/mpid_nem_net_module_defs.h config.status: creating src/mpid/ch3/channels/nemesis/src/mpid_nem_net_array.c config.status: creating Makefile config.status: creating examples/Makefile config.status: creating test/Makefile config.status: creating test/commands/Makefile config.status: creating src/include/mpichinfo.h config.status: creating mpich-doxygen config.status: creating src/include/glue_romio.h config.status: creating src/binding/cxx/mpicxx.h config.status: creating src/binding/fortran/mpif_h/mpif.h config.status: creating src/binding/fortran/mpif_h/setbotf.f config.status: creating src/binding/fortran/mpif_h/setbot.c config.status: creating src/binding/fortran/use_mpi/mpi_sizeofs.f90 config.status: creating src/binding/fortran/use_mpi/mpi_base.f90 config.status: creating src/binding/fortran/use_mpi/mpi_constants.f90 config.status: creating src/binding/fortran/use_mpi_f08/mpi_f08_compile_constants.f90 config.status: creating src/binding/fortran/use_mpi_f08/mpi_c_interface_types.f90 config.status: creating src/packaging/pkgconfig/mpich.pc config.status: creating src/packaging/envmods/mpich.module config.status: WARNING: 'src/packaging/envmods/mpich.module.in' seems to ignore the --datarootdir setting config.status: creating src/env/mpixxx_opts.conf config.status: creating src/env/mpicc.sh config.status: creating src/env/mpicc.bash config.status: creating src/env/mpicxx.sh config.status: creating src/env/mpicxx.bash config.status: creating src/env/mpif77.sh config.status: creating src/env/mpif77.bash config.status: creating src/env/mpifort.sh config.status: creating src/env/mpifort.bash config.status: creating src/env/parkill config.status: creating src/util/dbg/getfuncstack config.status: creating src/util/timers/mpiu_timer.h config.status: creating src/include/mpi.h config.status: creating doc/design/Makefile config.status: creating doc/installguide/Makefile config.status: creating doc/logging/Makefile config.status: creating doc/refman/Makefile config.status: creating doc/userguide/Makefile config.status: creating test/commands/cmdtests config.status: creating src/include/mpichconf.h config.status: src/include/mpichconf.h is unchanged config.status: executing depfiles commands config.status: executing libtool commands config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands config.status: executing default-4 commands config.status: executing default-5 commands === configuring in test/mpi (/home/IEUser/mpich-3.2/test/mpi) configure: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local' --cache-file=/dev/null --srcdir=. RUNNING CONFIGURE FOR MPI TESTS checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking whether make supports nested variables... (cached) yes checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for style of include used by make... GNU checking whether the C compiler works... yes checking for C compiler default output file name... a.exe checking for suffix of executables... .exe checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... gcc3 checking whether long double is supported... yes checking whether long long is supported... yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for ranlib... ranlib checking the archiver (ar) interface... ar checking for grep that handles long lines and -e... /usr/bin/grep checking for fgrep... /usr/bin/grep -F checking how to run the C preprocessor... gcc -E checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking size of void *... 8 checking for library containing socket... none required checking for library containing gethostbyname... none required checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for library containing pthread_create... none required checking for library containing pthread_barrier_init... none required checking for pthread_create... yes checking for pthread_yield... yes checking for pthread_barrier_init... yes checking for pthread_barrier_wait... yes checking whether struct hostent contains h_addr_list... yes checking for getrusage... yes checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes checking whether integer*4 is supported... yes checking whether integer*8 is supported... yes checking whether integer*16 is supported... yes checking build system type... x86_64-unknown-cygwin checking host system type... x86_64-unknown-cygwin checking how to get verbose linking output from gfortran... -v checking for Fortran 77 libraries of gfortran... -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0 -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0/../../../../x86_64-pc-cygwin/lib/../lib -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0/../../../../x86_64-pc-cygwin/lib -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0/../../.. -lgfortran -lquadmath -lm -lcygwin -ladvapi32 -lshell32 -luser32 checking for Fortran 77 name mangling... lower uscore checking whether gfortran allows mismatched arguments... yes checking for Fortran libraries needed for getarg... none needed checking whether Fortran 77 supports Cray-style pointer... yes checking for Fortran 77 compiler flag for Cray-style pointer... -fcray-pointer checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for extension for Fortran 90 programs... f90 checking whether the Fortran 90 compiler (gfortran ) works... yes checking whether the Fortran 90 compiler (gfortran ) is a cross-compiler... no checking for Fortran flag needed to accept free-form source... none checking whether Fortran 90 supports Cray-style pointer... yes checking for Fortran 90 compiler flag for Cray-style pointer... -fcray-pointer checking whether gfortran supports the Fortran 2003 routines to access the commandline... yes checking for Fortran 90 module extension... mod checking for Fortran 90 module include flag... -I checking for Fortran 90 module output directory flag... -J checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... gcc3 checking whether available... yes checking whether the compiler implements namespaces... yes checking whether the compiler implements the namespace std... yes checking whether MPI_2DOUBLE_COMPLEX is available... no checking whether MPI_2COMPLEX is available... no checking size of void *... (cached) 8 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of short... 2 checking for C integer type of address size... long checking for perl... /usr/bin/perl checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating maint/testmerge config.status: creating runtests config.status: creating checktests config.status: creating Makefile config.status: creating basic/Makefile config.status: creating attr/Makefile config.status: creating util/Makefile config.status: creating coll/Makefile config.status: creating coll/testlist config.status: creating comm/Makefile config.status: creating datatype/Makefile config.status: creating datatype/testlist config.status: creating errhan/Makefile config.status: creating group/Makefile config.status: creating info/Makefile config.status: creating init/Makefile config.status: creating pt2pt/Makefile config.status: creating mpi_t/Makefile config.status: creating rma/Makefile config.status: creating rma/testlist config.status: creating spawn/Makefile config.status: creating spawn/testlist config.status: creating topo/Makefile config.status: creating io/Makefile config.status: creating io/testlist config.status: creating f77/Makefile config.status: creating f77/attr/Makefile config.status: creating f77/attr/attraints.h config.status: creating f77/pt2pt/attr1aints.h config.status: creating f77/ext/add1size.h config.status: creating f77/datatype/Makefile config.status: creating f77/datatype/typeaints.h config.status: creating f77/util/Makefile config.status: creating f77/coll/Makefile config.status: creating f77/comm/Makefile config.status: creating f77/topo/Makefile config.status: creating f77/init/Makefile config.status: creating f77/rma/addsize.h config.status: creating f77/pt2pt/Makefile config.status: creating f77/info/Makefile config.status: creating f77/spawn/Makefile config.status: creating f77/spawn/testlist config.status: creating f77/spawn/type1aint.h config.status: creating f77/rma/Makefile config.status: creating f77/ext/Makefile config.status: creating f77/ext/testlist config.status: creating f77/io/Makefile config.status: creating f77/io/iooffset.h config.status: creating f77/io/iodisp.h config.status: creating f77/io/ioaint.h config.status: creating f77/io/testlist config.status: creating f77/profile/Makefile config.status: creating f90/Makefile config.status: creating f90/attr/Makefile config.status: creating f90/datatype/Makefile config.status: creating f90/f90types/Makefile config.status: creating f90/util/Makefile config.status: creating f90/coll/Makefile config.status: creating f90/comm/Makefile config.status: creating f90/topo/Makefile config.status: creating f90/init/Makefile config.status: creating f90/pt2pt/Makefile config.status: creating f90/rma/Makefile config.status: creating f90/info/Makefile config.status: creating f90/spawn/Makefile config.status: creating f90/spawn/testlist config.status: creating f90/timer/Makefile config.status: creating f90/ext/Makefile config.status: creating f90/ext/testlist config.status: creating f90/io/Makefile config.status: creating f90/io/testlist config.status: creating f90/misc/Makefile config.status: creating f90/profile/Makefile config.status: creating f08/Makefile config.status: creating f08/attr/Makefile config.status: creating f08/datatype/Makefile config.status: creating f08/util/Makefile config.status: creating f08/coll/Makefile config.status: creating f08/comm/Makefile config.status: creating f08/pt2pt/Makefile config.status: creating f08/rma/Makefile config.status: creating f08/subarray/Makefile config.status: creating f08/topo/Makefile config.status: creating f08/io/Makefile config.status: creating f08/io/testlist config.status: creating f08/init/Makefile config.status: creating f08/info/Makefile config.status: creating f08/spawn/Makefile config.status: creating f08/spawn/testlist config.status: creating f08/timer/Makefile config.status: creating f08/ext/Makefile config.status: creating f08/misc/Makefile config.status: creating f08/profile/Makefile config.status: creating cxx/Makefile config.status: creating cxx/util/Makefile config.status: creating cxx/attr/Makefile config.status: creating cxx/pt2pt/Makefile config.status: creating cxx/comm/Makefile config.status: creating cxx/coll/Makefile config.status: creating cxx/errhan/Makefile config.status: creating cxx/info/Makefile config.status: creating cxx/datatype/Makefile config.status: creating cxx/io/Makefile config.status: creating cxx/init/Makefile config.status: creating cxx/rma/Makefile config.status: creating cxx/spawn/Makefile config.status: creating cxx/spawn/testlist config.status: creating cxx/topo/Makefile config.status: creating threads/Makefile config.status: creating threads/pt2pt/Makefile config.status: creating threads/util/Makefile config.status: creating threads/comm/Makefile config.status: creating threads/comm/testlist config.status: creating threads/init/Makefile config.status: creating threads/mpi_t/Makefile config.status: creating threads/spawn/Makefile config.status: creating threads/rma/Makefile config.status: creating threads/coll/Makefile config.status: creating threads/coll/testlist config.status: creating errors/Makefile config.status: creating errors/attr/Makefile config.status: creating errors/basic/Makefile config.status: creating errors/coll/Makefile config.status: creating errors/comm/Makefile config.status: creating errors/datatype/Makefile config.status: creating errors/faults/Makefile config.status: creating errors/group/Makefile config.status: creating errors/pt2pt/Makefile config.status: creating errors/rma/Makefile config.status: creating errors/spawn/Makefile config.status: creating errors/spawn/testlist config.status: creating errors/topo/Makefile config.status: creating errors/io/Makefile config.status: creating errors/cxx/Makefile config.status: creating errors/cxx/errhan/Makefile config.status: creating errors/cxx/io/Makefile config.status: creating errors/f77/Makefile config.status: creating errors/f77/io/Makefile config.status: creating errors/f77/io/addsize.h config.status: creating errors/f77/io/iooffset.h config.status: creating errors/f90/Makefile config.status: creating errors/f90/io/Makefile config.status: creating errors/f08/Makefile config.status: creating errors/f08/io/Makefile config.status: creating ckpoint/Makefile config.status: creating ft/Makefile config.status: creating manual/Makefile config.status: creating manual/manyconnect config.status: creating manual/mpi_t/Makefile config.status: creating perf/Makefile config.status: creating testlist config.status: creating cxx/testlist config.status: creating cxx/topo/testlist config.status: creating f77/testlist config.status: creating f90/testlist config.status: creating threads/testlist config.status: creating errors/testlist config.status: creating errors/cxx/testlist config.status: creating errors/f77/testlist config.status: creating errors/f90/testlist config.status: creating impls/testlist config.status: creating f77/rma/testlist config.status: creating f90/rma/testlist config.status: creating f08/rma/testlist config.status: creating impls/Makefile config.status: creating impls/hydra/Makefile config.status: creating impls/hydra/proc_binding.sh config.status: creating impls/mpich/Makefile config.status: creating impls/mpich/testlist config.status: creating impls/mpich/mpi_t/Makefile config.status: creating include/mpitestconf.h config.status: include/mpitestconf.h is unchanged config.status: executing depfiles commands config.status: executing default-1 commands config.status: executing default-2 commands config.status: executing default-3 commands config.status: executing default-4 commands Configuration completed.