Configuring MPICH version 4.0a2 with '-prefix=/home/kmccall/mpich-install-4.0a2' 'CC=pgcc' 'CXX=pgc++' '--with-pbs=/opt/torque' '--with-device=ch3:nemesis' '--disable-fortran' '--with-pm=hydra' '-enable-debuginfo' Running on system: Linux msnova 3.10.0-514.10.2.el7.x86_64 #1 SMP Fri Mar 3 00:04:05 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for gcc... pgcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... no checking whether pgcc accepts -g... yes checking for pgcc option to accept ISO C89... none needed checking whether pgcc understands -c and -o together... yes checking for pgcc option to accept ISO C99... none needed checking how to run the C preprocessor... pgcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for style of include used by make... 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BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from pgcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking for pgcc option to produce PIC... -fpic -DPIC checking if pgcc PIC flag -fpic -DPIC works... yes checking if pgcc static flag -Bstatic works... no checking if pgcc supports -c -o file.o... yes checking if pgcc supports -c -o file.o... 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(cached) yes checking size parameter type for backtrace()... int checking for library containing backtrace... none required checking for library containing gethostbyname... none required checking for library containing socket... none required checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking for inet_ntop... yes checking for getifaddrs... yes checking for __attribute__((aligned))... yes checking for __attribute__((used))... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating include/mpl_timer.h config.status: creating include/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing prefix-config commands configure: ===== done with src/mpl configure ===== configure: sourcing src/mpl/localdefs checking for type of weak symbol alias support... pragma weak checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute__ ((weak_import)) allowed... yes checking whether __attribute__((weak,alias(...))) allowed... no checking for multiple weak symbol support... yes checking if pgcc supports -fvisibility=hidden... no checking whether to enable symbol visibility... no (unsupported) configure: ===== configuring modules/json-c ===== configure: running /bin/sh /home/kmccall/mpich-4.0a2/modules/json-c/configure --disable-option-checking '--prefix=/home/kmccall/mpich-install-4.0a2' --enable-embedded --disable-werror 'CC=pgcc' 'CXX=pgc++' '--with-pbs=/opt/torque' '--with-device=ch3:nemesis' '--disable-fortran' '--with-pm=hydra' '-enable-debuginfo' --cache-file=/dev/null --srcdir=/home/kmccall/mpich-4.0a2/modules/json-c checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /usr/bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make sets $(MAKE)... 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BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from pgcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking for pgcc option to produce PIC... -fpic -DPIC checking if pgcc PIC flag -fpic -DPIC works... yes checking if pgcc static flag -Bstatic works... no checking if pgcc supports -c -o file.o... yes checking if pgcc supports -c -o file.o... 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(cached) pgcc checking for pgcc option to accept ISO C99... none needed checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for X... libraries , headers ### ### Configuring hwloc core ### checking hwloc building mode... embedded configure: hwloc builddir: /home/kmccall/mpich-build-4.0a2/modules/hwloc configure: hwloc srcdir: /home/kmccall/mpich-4.0a2/modules/hwloc configure: Detected VPATH build checking for hwloc version... 2.4.1rc3-git checking if want hwloc maintainer support... disabled (embedded mode) checking for hwloc directory prefix... (none) checking for hwloc symbol prefix... hwloc_ checking for pgcc option to accept ISO C99... (cached) none needed checking for the C compiler vendor... portland group checking size of void *... 8 checking which OS support to include... 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include/hwloc/autogen/config.h config.status: executing depfiles commands config.status: executing libtool commands ----------------------------------------------------------------------------- Hwloc optional build support status (more details can be found above): Probe / display I/O devices: PCI(linux) LinuxIO Graphical output: no (disabled in embedded mode) XML input / output: basic Netloc functionality: no Plugin support: no ----------------------------------------------------------------------------- configure: ===== done with modules/hwloc configure ===== hwloc_embedded_libs = -lm sourcing /home/kmccall/mpich-4.0a2/src/pm/hydra/mpichprereq checking whether C compiler accepts option -O2... yes checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes checking for shared library (esp. rpath) characteristics of CC... done (results in src/env/cc_shlib.conf) checking whether TRUE has been defined... no checking whether the C++ compiler pgc++ can 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(cached) yes checking whether we can use struct ifconf... yes checking whether we can use struct ifreq... yes checking for random.h... no checking for struct random_data... yes checking for random_r... yes configure: Using a symmetric heap configure: ===== configuring src/mpi/romio ===== configure: running /bin/sh /home/kmccall/mpich-4.0a2/src/mpi/romio/configure --disable-option-checking '--prefix=/home/kmccall/mpich-install-4.0a2' 'CC=pgcc' 'CXX=pgc++' '--with-pbs=/opt/torque' '--with-device=ch3:nemesis' '--disable-fortran' '--with-pm=hydra' '-enable-debuginfo' --cache-file=/dev/null --srcdir=/home/kmccall/mpich-4.0a2/src/mpi/romio checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking for gcc... pgcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... no checking whether pgcc accepts -g... yes checking for pgcc option to accept ISO C89... none needed checking whether pgcc understands -c and -o together... yes checking for style of include used by make... 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BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld -m elf_x86_64 option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from pgcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking for pgcc option to produce PIC... -fpic -DPIC checking if pgcc PIC flag -fpic -DPIC works... yes checking if pgcc static flag -Bstatic works... no checking if pgcc supports -c -o file.o... yes checking if pgcc supports -c -o file.o... 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(cached) 8 checking for extension for Fortran 90 programs... f90 checking for Fortran 90 KIND parameter for 8-byte integers... 8 checking that we can use integer*8 to declare MPI_DISPLACMENT_CURRENT... yes Overriding Array test for MPICH checking for type of weak symbol alias support... pragma weak checking whether __attribute__ ((weak)) allowed... yes checking whether __attribute__ ((weak_import)) allowed... yes checking whether __attribute__((weak,alias(...))) allowed... no checking for multiple weak symbol support... yes checking whether struct flock compatible with MPI_Offset... yes checking for pvfs2-config... notfound checking configured file systems... testfs ufs nfs configure: WARNING: File locks may not work with NFS. See the Installation and users manual for instructions on testing and if necessary fixing this checking for library containing aio_write... -lrt checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking aio.h usability... yes checking aio.h presence... yes checking for aio.h... yes checking sys/aio.h usability... no checking sys/aio.h presence... no checking for sys/aio.h... no checking whether aio routines can be used... yes checking for obsolete two-argument aio_write... no checking for obsolete two-argument aio_suspend... no checking for struct aiocb.aio_fildes... yes checking for struct aiocb.aio_whence... no checking for struct aiocb.aio_handle... no checking for struct aiocb.aio_reqprio... yes checking for struct aiocb.aio_sigevent... yes checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/mount.h usability... yes checking sys/mount.h presence... yes checking for sys/mount.h... yes checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking for statfs... yes checking whether struct statfs properly defined... yes checking for f_type member of statfs structure... yes checking for f_fstypename member of statfs structure... no checking for sys/stat.h... 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(cached) yes checking for statvfs... yes checking for f_basetype member of statvfs structure... no checking for blksize_t... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking whether pwrite is declared... yes checking for strerror... yes checking for doctext... false checking for strdup... yes checking whether strdup needs a declaration... no checking for lstat... yes checking whether lstat needs a declaration... no checking for readlink... yes checking whether readlink needs a declaration... no checking for fsync... yes checking whether fsync needs a declaration... no checking for ftruncate... yes checking whether ftruncate needs a declaration... no checking for lseek64... yes checking whether lseek64 needs a declaration... no checking for usleep... yes checking whether usleep needs a declaration... no configure: setting SYSDEP_INC to checking for C/C++ restrict keyword... __restrict checking for gcov... gcov configure: setting CC to pgcc configure: setting F77 to gfortran configure: setting TEST_CC to $(bindir)/mpicc configure: setting TEST_F77 to $(bindir)/mpifort configure: setting CFLAGS to -O2 -DFORTRANUNDERSCORE -DHAVE_ROMIOCONF_H configure: setting USER_CFLAGS to configure: setting USER_FFLAGS to checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating mpi2-other/info/Makefile config.status: creating mpi2-other/array/Makefile config.status: creating test/Makefile config.status: creating test/misc.c config.status: creating test/large_file.c config.status: creating test/runtests config.status: creating test-internal/Makefile config.status: creating util/romioinstall config.status: creating include/mpio.h config.status: creating include/mpiof.h config.status: creating mpi2-other/info/fortran/Makefile config.status: creating mpi2-other/array/fortran/Makefile config.status: creating test/fmisc.f config.status: creating test/fcoll_test.f config.status: creating test/pfcoll_test.f config.status: creating test/fperf.f config.status: creating adio/include/romioconf.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing chmod commands configure: ===== done with src/mpi/romio configure ===== configure: sourcing src/mpi/romio/localdefs configure: ===== configuring src/pm/hydra ===== configure: running /bin/sh /home/kmccall/mpich-4.0a2/src/pm/hydra/configure --disable-option-checking '--prefix=/home/kmccall/mpich-install-4.0a2' 'CC=pgcc' 'CXX=pgc++' '--with-pbs=/opt/torque' '--with-device=ch3:nemesis' '--disable-fortran' '--with-pm=hydra' '-enable-debuginfo' --cache-file=/dev/null --srcdir=/home/kmccall/mpich-4.0a2/src/pm/hydra checking for gcc... pgcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... no checking whether pgcc accepts -g... yes checking for pgcc option to accept ISO C89... none needed checking whether pgcc understands -c and -o together... yes checking for pgcc option to accept ISO C99... none needed checking how to run the C preprocessor... pgcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking for style of include used by make... GNU checking whether make supports nested variables... yes checking dependency style of pgcc... pgcc checking for ar... ar checking the archiver (ar) interface... ar checking whether make supports nested variables... (cached) yes checking for fgrep... /usr/bin/grep -F checking for perl... /usr/bin/perl checking for doctext... false checking for an ANSI C-conforming const... yes checking for working volatile... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking size of unsigned long... 8 checking for size_t... yes checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for GNU ld... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld -m elf_x86_64 option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from pgcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking for pgcc option to produce PIC... -fpic -DPIC checking if pgcc PIC flag -fpic -DPIC works... yes checking if pgcc static flag -Bstatic works... no checking if pgcc supports -c -o file.o... yes checking if pgcc supports -c -o file.o... (cached) yes checking whether the pgcc linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for variable argument list macro functionality... yes configure: ===== configuring mpl ===== configure: running /bin/sh /home/kmccall/mpich-4.0a2/src/pm/hydra/mpl/configure --disable-option-checking '--prefix=/home/kmccall/mpich-install-4.0a2' --disable-versioning --enable-embedded 'CC=pgcc' 'CXX=pgc++' '--with-pbs=/opt/torque' '--with-device=ch3:nemesis' '--disable-fortran' '--with-pm=hydra' '-enable-debuginfo' 'CFLAGS= -O2 ' 'LDFLAGS=' 'LIBS=' 'CPPFLAGS= -I/home/kmccall/mpich-build-4.0a2/src/mpl/include -I/home/kmccall/mpich-4.0a2/src/mpl/include -I/home/kmccall/mpich-4.0a2/modules/json-c -I/home/kmccall/mpich-build-4.0a2/modules/json-c -I/home/kmccall/mpich-4.0a2/modules/hwloc/include -I/home/kmccall/mpich-build-4.0a2/modules/hwloc/include -D_REENTRANT -I/home/kmccall/mpich-build-4.0a2/src/mpi/romio/include' --cache-file=/dev/null --srcdir=/home/kmccall/mpich-4.0a2/src/pm/hydra/mpl checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... pgcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... no checking whether pgcc accepts -g... yes checking for pgcc option to accept ISO C89... none needed checking whether pgcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of pgcc... pgcc checking for pgcc option to accept ISO C99... none needed checking how to run the C preprocessor... pgcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for ar... ar checking the archiver (ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for fgrep... /usr/bin/grep -F checking for GNU ld... /usr/bin/ld -m elf_x86_64 -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld -m elf_x86_64 -m elf_x86_64 option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from pgcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking for pgcc option to produce PIC... -fpic -DPIC checking if pgcc PIC flag -fpic -DPIC works... yes checking if pgcc static flag -Bstatic works... no checking if pgcc supports -c -o file.o... yes checking if pgcc supports -c -o file.o... (cached) yes checking whether the pgcc linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking whether make supports nested variables... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for inline... inline checking for variable argument list macro functionality... yes checking if C compiler supports __builtin_expect... yes checking for C11 _Static_assert functionality... no checking for gcov... gcov checking whether the compiler supports __typeof(variable)... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for sys/types.h... (cached) yes checking sys/uio.h usability... yes checking sys/uio.h presence... yes checking for sys/uio.h... yes checking execinfo.h usability... yes checking execinfo.h presence... yes checking for execinfo.h... yes checking for unistd.h... (cached) yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking valgrind.h usability... no checking valgrind.h presence... no checking for valgrind.h... no checking memcheck.h usability... no checking memcheck.h presence... no checking for memcheck.h... no checking valgrind/valgrind.h usability... no checking valgrind/valgrind.h presence... no checking for valgrind/valgrind.h... no checking valgrind/memcheck.h usability... no checking valgrind/memcheck.h presence... no checking for valgrind/memcheck.h... no checking helgrind.h usability... no checking helgrind.h presence... no checking for helgrind.h... no checking valgrind/helgrind.h usability... no checking valgrind/helgrind.h presence... no checking for valgrind/helgrind.h... no checking drd.h usability... no checking drd.h presence... no checking for drd.h... no checking valgrind/drd.h usability... no checking valgrind/drd.h presence... no checking for valgrind/drd.h... no checking whether the valgrind headers are broken or too old... yes checking for clock_gettime... yes checking for clock_getres... yes checking for gethrtime... no checking for mach_absolute_time... no checking for gettimeofday... yes checking for library containing clock_gettime... none required checking for library containing clock_getres... none required checking whether struct timespec is defined in time.h... yes checking for CLOCK_REALTIME defined in time.h... yes configure: Timer type selected is CLOCK_GETTIME checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for unistd.h... (cached) yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking for sched_yield... yes checking for yield... no checking for usleep... yes checking for sleep... yes checking for select... yes checking whether usleep needs a declaration... no checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking for pthread_yield... yes checking for pthread_key_create... yes checking for thread local storage... configure: WARNING: Compiler does not support thread local storage checking for pthread_mutex_init... yes checking for pthread_mutexattr_setpshared... yes configure: POSIX will be used for interprocess mutex package. checking size of void *... 8 checking whether C compiler accepts option -Werror... no checking for support for gcc __sync intrinsics... no checking for support for gcc __atomic intrinsics... no checking for support for C11 atomic intrinsics... no checking for support for Windows NT atomic intrinsics... no checking for mkstemp... yes checking whether mkstemp needs a declaration... no checking for fdopen... yes checking whether fdopen needs a declaration... no checking for getpid... yes checking for mmap... yes checking for munmap... yes configure: Using a memory-mapped file for shared memory checking cuda_runtime_api.h usability... no checking cuda_runtime_api.h presence... no checking for cuda_runtime_api.h... no checking level_zero/ze_api.h usability... no checking level_zero/ze_api.h presence... no checking for level_zero/ze_api.h... no checking for strdup... yes checking whether strdup needs a declaration... no checking for snprintf... yes checking whether snprintf needs a declaration... no checking for putenv... yes checking whether putenv needs a declaration... no checking for strerror... yes checking whether strerror needs a declaration... no checking for usleep... (cached) yes checking whether usleep needs a declaration... (cached) no checking for posix_memalign... yes checking for aligned_alloc... yes checking whether aligned_alloc needs a declaration... no checking for execinfo.h... (cached) yes checking size parameter type for backtrace()... int checking for library containing backtrace... none required checking for library containing gethostbyname... none required checking for library containing socket... none required checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking for inet_ntop... yes checking for getifaddrs... yes checking for __attribute__((aligned))... yes checking for __attribute__((used))... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating localdefs config.status: creating include/mpl_timer.h config.status: creating include/config.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing prefix-config commands configure: ===== done with mpl configure ===== configure: sourcing mpl/localdefs checking for doxygen... /usr/bin/doxygen checking for gcov... gcov checking for unistd.h... (cached) yes checking for strings.h... (cached) yes checking for sys/types.h... (cached) yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for sys/stat.h... (cached) yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking sys/un.h usability... yes checking sys/un.h presence... yes checking for sys/un.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking ifaddrs.h usability... yes checking ifaddrs.h presence... yes checking for ifaddrs.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking winsock2.h usability... no checking winsock2.h presence... no checking for winsock2.h... no checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for library containing socket... none required checking for library containing gethostbyname... none required checking for library containing hstrerror... none required checking for gettimeofday... yes checking for time... yes checking for sigaction... yes checking for signal... yes checking for usleep... yes checking for alloca... yes checking for unsetenv... yes checking for strsignal... yes checking for stat... yes checking for fcntl... yes checking for alarm... yes checking for isatty... yes checking for inet_ntop... yes checking for getpgid... yes checking for setsid... yes checking for killpg... yes checking for hstrerror... yes checking whether hstrerror needs a declaration... no checking whether gettimeofday needs a declaration... no checking whether getpgid needs a declaration... no checking whether killpg needs a declaration... no checking for environ in unistd.h... yes checking bootstrap server... user,ssh,rsh,fork,slurm,ll,lsf,sge,pbs,cobalt,manual,persist checking tm.h usability... yes checking tm.h presence... yes checking for tm.h... yes checking for tm_init in -ltorque... yes checking process manager... pmiserv checking user interface... mpich checking desired processor topology libraries... hwloc checking hwloc.h usability... yes checking hwloc.h presence... yes checking for hwloc.h... yes checking for hwloc_topology_set_pid in -lhwloc... no configure: ===== configuring tools/topo/hwloc/hwloc ===== configure: running /bin/sh /home/kmccall/mpich-4.0a2/src/pm/hydra/tools/topo/hwloc/hwloc/configure --disable-option-checking '--prefix=/home/kmccall/mpich-install-4.0a2' --enable-embedded-mode --disable-visibility 'CC=pgcc' 'CXX=pgc++' '--with-pbs=/opt/torque' '--with-device=ch3:nemesis' '--disable-fortran' '--with-pm=hydra' '-enable-debuginfo' 'CFLAGS=' 'LDFLAGS= -L/opt/torque/lib' 'LIBS=' 'CPPFLAGS= -I/home/kmccall/mpich-build-4.0a2/src/mpl/include -I/home/kmccall/mpich-4.0a2/src/mpl/include -I/home/kmccall/mpich-4.0a2/modules/json-c -I/home/kmccall/mpich-build-4.0a2/modules/json-c -I/home/kmccall/mpich-4.0a2/modules/hwloc/include -I/home/kmccall/mpich-build-4.0a2/modules/hwloc/include -D_REENTRANT -I/home/kmccall/mpich-build-4.0a2/src/mpi/romio/include -I/opt/torque/include' --cache-file=/dev/null --srcdir=/home/kmccall/mpich-4.0a2/src/pm/hydra/tools/topo/hwloc/hwloc ### ### Configuring hwloc distribution tarball ### Startup tests ### checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking target system type... x86_64-unknown-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '3658' is supported by ustar format... yes checking whether GID '1014' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether make supports nested variables... (cached) yes checking for style of include used by make... GNU checking for gcc... pgcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... no checking whether pgcc accepts -g... yes checking for pgcc option to accept ISO C89... none needed checking whether pgcc understands -c and -o together... yes checking dependency style of pgcc... pgcc checking how to run the C preprocessor... pgcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking for ar... ar checking the archiver (ar) interface... ar checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for fgrep... /usr/bin/grep -F checking for GNU ld... /usr/bin/ld -m elf_x86_64 -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld -m elf_x86_64 -m elf_x86_64 option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from pgcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking for pgcc option to produce PIC... -fpic -DPIC checking if pgcc PIC flag -fpic -DPIC works... yes checking if pgcc static flag -Bstatic works... no checking if pgcc supports -c -o file.o... yes checking if pgcc supports -c -o file.o... (cached) yes checking whether the pgcc linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for shl_load... no checking for shl_load in -ldld... no checking for dlopen... no checking for dlopen in -ldl... yes checking whether a program can dlopen itself... yes checking whether a statically linked program can dlopen itself... yes checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking whether we are using the GNU C++ compiler... yes checking whether pgc++ accepts -g... yes checking dependency style of pgc++... pgcc checking how to run the C++ preprocessor... pgc++ -E checking for ld used by pgc++... /usr/bin/ld -m elf_x86_64 -m elf_x86_64 -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64 -m elf_x86_64) is GNU ld... yes pgc++-Error-Unknown switch: -print-prog-name=ld checking whether the pgc++ linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking for pgc++ option to produce PIC... -fPIC -DPIC checking if pgc++ PIC flag -fPIC -DPIC works... yes checking if pgc++ static flag -static works... no checking if pgc++ supports -c -o file.o... yes checking if pgc++ supports -c -o file.o... (cached) yes checking whether the pgc++ linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for gcc... (cached) pgcc checking whether we are using the GNU C compiler... (cached) no checking whether pgcc accepts -g... (cached) yes checking for pgcc option to accept ISO C89... (cached) none needed checking whether pgcc understands -c and -o together... (cached) yes checking dependency style of pgcc... (cached) pgcc checking for pgcc option to accept ISO C99... none needed checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for X... libraries , headers ### ### Configuring hwloc core ### checking hwloc building mode... embedded configure: hwloc builddir: /home/kmccall/mpich-build-4.0a2/src/pm/hydra/tools/topo/hwloc/hwloc configure: hwloc srcdir: /home/kmccall/mpich-4.0a2/src/pm/hydra/tools/topo/hwloc/hwloc configure: Detected VPATH build checking for hwloc version... 2.4.1rc3-git checking if want hwloc maintainer support... disabled (embedded mode) checking for hwloc directory prefix... (none) checking for hwloc symbol prefix... hwloc_ checking for pgcc option to accept ISO C99... (cached) none needed checking for the C compiler vendor... portland group checking size of void *... 8 checking which OS support to include... Linux checking which CPU support to include... x86_64 checking size of unsigned long... 8 checking size of unsigned int... 4 checking for __attribute__... yes checking for __attribute__(aligned)... yes checking for __attribute__(always_inline)... yes checking for __attribute__(cold)... yes checking for __attribute__(const)... yes checking for __attribute__(deprecated)... yes checking for __attribute__(format)... no checking for __attribute__(hot)... yes checking for __attribute__(malloc)... yes checking for __attribute__(may_alias)... yes checking for __attribute__(no_instrument_function)... yes checking for __attribute__(nonnull)... no checking for __attribute__(noreturn)... yes checking for __attribute__(packed)... yes checking for __attribute__(pure)... yes checking for __attribute__(sentinel)... no checking for __attribute__(unused)... yes checking for __attribute__(warn_unused_result)... no checking for __attribute__(weak_alias)... yes checking whether to enable symbol visibility... no (disabled) checking whether the C compiler rejects function calls with too many arguments... yes checking whether the C compiler rejects function calls with too few arguments... yes checking for unistd.h... (cached) yes checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking for strings.h... (cached) yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking for strcasecmp... yes checking whether strcasecmp is declared... yes checking whether function strcasecmp has a complete prototype... yes checking for strncasecmp... yes checking whether strncasecmp is declared... yes checking whether function strncasecmp has a complete prototype... yes checking for strftime... yes checking for setlocale... yes checking for stdint.h... (cached) yes checking sys/mman.h usability... yes checking sys/mman.h presence... yes checking for sys/mman.h... yes **** Linux-specific checks checking whether sched_getcpu is declared... yes checking whether sched_setaffinity is declared... yes checking whether function sched_setaffinity has a complete prototype... yes checking for old prototype of sched_setaffinity... no checking for working CPU_SET... yes checking for working CPU_SET_S... yes checking for working syscall with 6 parameters... yes checking libudev.h usability... no checking libudev.h presence... no checking for libudev.h... no **** end of Linux-specific checks checking whether pthread_setaffinity_np is declared... yes checking whether pthread_getaffinity_np is declared... yes checking whether fabsf is declared... yes checking for fabsf in -lm... yes checking whether modff is declared... yes checking for modff in -lm... yes checking whether _SC_NPROCESSORS_ONLN is declared... yes checking whether _SC_NPROCESSORS_CONF is declared... yes checking whether _SC_NPROC_ONLN is declared... no checking whether _SC_NPROC_CONF is declared... no checking whether _SC_PAGESIZE is declared... yes checking whether _SC_PAGE_SIZE is declared... yes checking whether _SC_LARGE_PAGESIZE is declared... no checking mach/mach_init.h usability... no checking mach/mach_init.h presence... no checking for mach/mach_init.h... no checking mach_init.h usability... no checking mach_init.h presence... no checking for mach_init.h... no checking mach/mach_host.h usability... no checking mach/mach_host.h presence... no checking for mach/mach_host.h... no checking whether strtoull is declared... yes checking for ssize_t... yes checking whether snprintf is declared... yes checking whether _strdup is declared... no checking whether _putenv is declared... no checking whether snprintf is correct... yes checking whether getprogname is declared... no checking whether getexecname is declared... no checking for program_invocation_name... yes checking for __progname... yes checking for pthread_t... yes checking for bash... /bin/sh checking for ffs... yes checking whether ffs is declared... yes checking whether function ffs has a complete prototype... yes checking for ffsl... yes checking whether ffsl is declared... yes checking whether function ffsl has a complete prototype... yes checking for fls... no checking for flsl... no checking for clz... no checking for clzl... no checking for openat... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking for getpagesize... yes checking for memalign... yes checking for posix_memalign... yes checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking for uname... yes checking for PCIACCESS... no checking pciaccess.h usability... no checking pciaccess.h presence... no checking for pciaccess.h... no checking CL/cl_ext.h usability... no checking CL/cl_ext.h presence... no checking for CL/cl_ext.h... no checking cuda.h usability... no checking cuda.h presence... no checking for cuda.h... no checking cuda_runtime_api.h usability... no checking cuda_runtime_api.h presence... no checking for cuda_runtime_api.h... no checking nvml.h usability... no checking nvml.h presence... no checking for nvml.h... no checking rocm_smi/rocm_smi.h usability... no checking rocm_smi/rocm_smi.h presence... no checking for rocm_smi/rocm_smi.h... no checking for gethostbyname... yes checking for connect... yes checking for remove... yes checking for shmat... yes checking for IceConnectionNumber in -lICE... no checking X11/Xlib.h usability... yes checking X11/Xlib.h presence... yes checking for X11/Xlib.h... yes checking for XOpenDisplay in -lX11... yes checking NVCtrl/NVCtrl.h usability... no checking NVCtrl/NVCtrl.h presence... no checking for NVCtrl/NVCtrl.h... no checking for LIBXML2... yes checking libxml/parser.h usability... yes checking libxml/parser.h presence... yes checking for libxml/parser.h... yes checking for xmlNewDoc... yes checking for final LIBXML2 support... yes checking for x86 cpuid... yes checking for pthread_mutex_lock... yes checking if plugin support is enabled... no checking components to build statically... noos xml synthetic xml_nolibxml linux xml_libxml x86 checking components to build as plugins... checking for diff... /usr/bin/diff ### ### Performing final hwloc configuration ### checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating include/Makefile config.status: creating hwloc/Makefile config.status: creating include/private/autogen/config.h config.status: creating include/hwloc/autogen/config.h config.status: executing depfiles commands config.status: executing libtool commands ----------------------------------------------------------------------------- Hwloc optional build support status (more details can be found above): Probe / display I/O devices: PCI(linux) LinuxIO Graphical output: no (disabled in embedded mode) XML input / output: full Netloc functionality: no Plugin support: no ----------------------------------------------------------------------------- configure: ===== done with tools/topo/hwloc/hwloc configure ===== checking available processor topology libraries... hwloc checking slurm/slurm.h usability... no checking slurm/slurm.h presence... no checking for slurm/slurm.h... no checking whether POSIX compliant regcomp()/regexec()... yes checking demux engine... poll,select,port checking for poll... yes checking for select... yes checking debugging support... none checking error checking... yes checking warnings... no checking profiling... yes checking for strsignal... (cached) yes checking whether strsignal needs a declaration... no checking for sigaction... (cached) yes checking for signal... (cached) yes checking for sigset... yes checking for struct sigaction and sa_handler... yes checking for gethostname... yes checking whether gethostname needs a declaration... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating tools/bootstrap/src/bsci_init.c config.status: creating hydra-doxygen.cfg config.status: creating include/hydra_config.h config.status: executing depfiles commands config.status: executing libtool commands configure: ===== done with src/pm/hydra configure ===== configure: WARNING: Could not define Fortran MPI datatypes for C checking the sizeof MPI_Offset... 8 configure: WARNING: The ch3:nemesis device did not set the maximum size of an error string, 512 being used. configure: creating ./config.lt config.lt: creating libtool checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating src/mpid/ch3/channels/nemesis/include/mpid_nem_net_module_defs.h config.status: creating src/mpid/ch3/channels/nemesis/src/mpid_nem_net_array.c config.status: creating Makefile config.status: creating examples/Makefile config.status: creating test/Makefile config.status: creating test/commands/Makefile config.status: creating src/include/mpichinfo.h config.status: creating mpich-doxygen config.status: creating src/include/mpir_ext.h config.status: creating src/binding/cxx/mpicxx.h config.status: creating src/binding/fortran/mpif_h/mpif.h config.status: creating src/binding/fortran/mpif_h/setbotf.f config.status: creating src/binding/fortran/mpif_h/setbot.c config.status: creating src/binding/fortran/use_mpi/mpi_sizeofs.f90 config.status: creating src/binding/fortran/use_mpi/mpi_base.f90 config.status: creating src/binding/fortran/use_mpi/mpi_constants.f90 config.status: creating src/binding/fortran/use_mpi_f08/mpi_f08_compile_constants.f90 config.status: creating src/binding/fortran/use_mpi_f08/mpi_c_interface_types.f90 config.status: creating src/packaging/pkgconfig/mpich.pc config.status: creating src/packaging/envmods/mpich.module config.status: WARNING: '/home/kmccall/mpich-4.0a2/src/packaging/envmods/mpich.module.in' seems to ignore the --datarootdir setting config.status: creating src/env/mpixxx_opts.conf config.status: creating src/env/mpicc.sh config.status: creating src/env/mpicc.bash config.status: creating src/env/mpicxx.sh config.status: creating src/env/mpicxx.bash config.status: creating src/env/mpif77.sh config.status: creating src/env/mpif77.bash config.status: creating src/env/mpifort.sh config.status: creating src/env/mpifort.bash config.status: creating src/env/parkill config.status: creating src/include/mpi.h config.status: creating doc/design/Makefile config.status: creating doc/installguide/Makefile config.status: creating doc/refman/Makefile config.status: creating doc/userguide/Makefile config.status: creating test/commands/cmdtests config.status: creating src/include/mpichconf.h config.status: executing depfiles commands config.status: executing libtool commands config.status: executing src/include/mpif.h commands config.status: executing external_setups commands config.status: executing lib/newconfig commands config.status: executing chmod commands === configuring in test/mpi (/home/kmccall/mpich-build-4.0a2/test/mpi) configure: running /bin/sh /home/kmccall/mpich-4.0a2/test/mpi/configure --disable-option-checking '--prefix=/home/kmccall/mpich-install-4.0a2' 'CC=pgcc' 'CXX=pgc++' '--with-pbs=/opt/torque' '--with-device=ch3:nemesis' '--disable-fortran' '--with-pm=hydra' '-enable-debuginfo' --cache-file=/dev/null --srcdir=/home/kmccall/mpich-4.0a2/test/mpi RUNNING CONFIGURE FOR MPI TESTS checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... yes checking whether make supports nested variables... (cached) yes checking for make... make checking whether clock skew breaks make... no checking whether make supports include... yes checking whether make allows comments in actions... yes checking for virtual path format... VPATH checking whether make sets CFLAGS... yes checking for gcc... pgcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... no checking whether pgcc accepts -g... yes checking for pgcc option to accept ISO C89... none needed checking whether pgcc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of pgcc... pgcc checking for pgcc option to accept ISO C99... none needed checking whether long double is supported... yes checking whether long long is supported... yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for ranlib... ranlib checking for ar... ar checking the archiver (ar) interface... ar checking for grep that handles long lines and -e... /usr/bin/grep checking for fgrep... /usr/bin/grep -F checking how to run the C preprocessor... pgcc -E checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking for strdup... yes checking whether strdup needs a declaration... no checking for usleep... yes checking whether usleep needs a declaration... no checking for int8_t... yes checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for _Bool... yes checking for float _Complex... yes checking for double _Complex... yes checking for long double _Complex... yes checking size of void *... 8 checking cuda_runtime_api.h usability... no checking cuda_runtime_api.h presence... no checking for cuda_runtime_api.h... no checking level_zero/ze_api.h usability... no checking level_zero/ze_api.h presence... no checking for level_zero/ze_api.h... no checking for library containing socket... none required checking for library containing gethostbyname... none required checking pthread.h usability... yes checking pthread.h presence... yes checking for pthread.h... yes checking for pthread_key_create in -lpthread... yes checking whether struct hostent contains h_addr_list... yes checking for getrusage... yes checking whether we are using the GNU Fortran 77 compiler... yes checking whether gfortran accepts -g... yes configure: WARNING: Selecting integer*8 as the Fortran type for MPI_Offset configure: WARNING: Selecting integer as the Fortran type for MPI_Aint checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking whether we are using the GNU C++ compiler... yes checking whether pgc++ accepts -g... yes checking dependency style of pgc++... pgcc checking whether available... yes checking whether the compiler implements namespaces... yes checking whether the compiler implements the namespace std... yes checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for GNU ld... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert file names to format... func_convert_file_noop checking how to convert file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld -m elf_x86_64 option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... unknown checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... (cached) ranlib checking command to parse /usr/bin/nm -B output from pgcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking for pgcc option to produce PIC... -DPIC checking if pgcc PIC flag -DPIC works... yes checking if pgcc static flag works... yes checking if pgcc supports -c -o file.o... yes checking if pgcc supports -c -o file.o... (cached) yes checking whether the pgcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... no checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... no checking whether to build shared libraries... no checking whether to build static libraries... yes checking how to run the C++ preprocessor... pgc++ -E checking for ld used by pgc++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes pgc++-Error-Unknown switch: -print-prog-name=ld checking whether the pgc++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... no checking for pgc++ option to produce PIC... -fPIC -DPIC checking if pgc++ PIC flag -fPIC -DPIC works... yes checking if pgc++ static flag -static works... no checking if pgc++ supports -c -o file.o... yes checking if pgc++ supports -c -o file.o... (cached) yes checking whether the pgc++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... no checking dynamic linker characteristics... no checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... no checking whether to build shared libraries... no checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... no checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... no checking whether to build shared libraries... no checking whether to build static libraries... yes checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... no checking how to hardcode library paths into programs... immediate checking size of void *... (cached) 8 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking size of short... 2 checking for C integer type of address size... long checking for perl... /usr/bin/perl checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating maint/testmerge config.status: creating runtests config.status: creating checktests config.status: creating Makefile config.status: creating basic/Makefile config.status: creating attr/Makefile config.status: creating attr/testlist config.status: creating util/Makefile config.status: creating coll/Makefile config.status: creating coll/testlist config.status: creating comm/Makefile config.status: creating comm/testlist config.status: creating datatype/Makefile config.status: creating datatype/testlist config.status: creating errhan/Makefile config.status: creating group/Makefile config.status: creating info/Makefile config.status: creating init/Makefile config.status: creating pt2pt/Makefile config.status: creating pt2pt/testlist config.status: creating part/Makefile config.status: creating mpi_t/Makefile config.status: creating rma/Makefile config.status: creating rma/testlist config.status: creating spawn/Makefile config.status: creating spawn/testlist config.status: creating topo/Makefile config.status: creating io/Makefile config.status: creating io/testlist config.status: creating f77/Makefile config.status: creating f77/attr/Makefile config.status: creating f77/attr/attraints.h config.status: creating f77/pt2pt/attr1aints.h config.status: creating f77/ext/add1size.h config.status: creating f77/datatype/Makefile config.status: creating f77/datatype/typeaints.h config.status: creating f77/coll/Makefile config.status: creating f77/comm/Makefile config.status: creating f77/topo/Makefile config.status: creating f77/init/Makefile config.status: creating f77/rma/addsize.h config.status: creating f77/pt2pt/Makefile config.status: creating f77/info/Makefile config.status: creating f77/spawn/Makefile config.status: creating f77/spawn/testlist config.status: creating f77/spawn/type1aint.h config.status: creating f77/rma/Makefile config.status: creating f77/ext/Makefile config.status: creating f77/ext/testlist config.status: creating f77/io/Makefile config.status: creating f77/io/iooffset.h config.status: creating f77/io/iodisp.h config.status: creating f77/io/ioaint.h config.status: creating f77/io/testlist config.status: creating f77/profile/Makefile config.status: creating f90/Makefile config.status: creating f90/attr/Makefile config.status: creating f90/datatype/Makefile config.status: creating f90/f90types/Makefile config.status: creating f90/coll/Makefile config.status: creating f90/comm/Makefile config.status: creating f90/topo/Makefile config.status: creating f90/init/Makefile config.status: creating f90/pt2pt/Makefile config.status: creating f90/rma/Makefile config.status: creating f90/info/Makefile config.status: creating f90/spawn/Makefile config.status: creating f90/spawn/testlist config.status: creating f90/timer/Makefile config.status: creating f90/ext/Makefile config.status: creating f90/ext/testlist config.status: creating f90/io/Makefile config.status: creating f90/io/testlist config.status: creating f90/misc/Makefile config.status: creating f90/profile/Makefile config.status: creating f08/Makefile config.status: creating f08/attr/Makefile config.status: creating f08/datatype/Makefile config.status: creating f08/coll/Makefile config.status: creating f08/comm/Makefile config.status: creating f08/pt2pt/Makefile config.status: creating f08/rma/Makefile config.status: creating f08/subarray/Makefile config.status: creating f08/topo/Makefile config.status: creating f08/io/Makefile config.status: creating f08/io/testlist config.status: creating f08/init/Makefile config.status: creating f08/info/Makefile config.status: creating f08/spawn/Makefile config.status: creating f08/spawn/testlist config.status: creating f08/timer/Makefile config.status: creating f08/ext/Makefile config.status: creating f08/misc/Makefile config.status: creating f08/profile/Makefile config.status: creating cxx/Makefile config.status: creating cxx/attr/Makefile config.status: creating cxx/attr/testlist config.status: creating cxx/pt2pt/Makefile config.status: creating cxx/comm/Makefile config.status: creating cxx/coll/Makefile config.status: creating cxx/errhan/Makefile config.status: creating cxx/info/Makefile config.status: creating cxx/datatype/Makefile config.status: creating cxx/datatype/testlist config.status: creating cxx/io/Makefile config.status: creating cxx/init/Makefile config.status: creating cxx/rma/Makefile config.status: creating cxx/spawn/Makefile config.status: creating cxx/spawn/testlist config.status: creating cxx/topo/Makefile config.status: creating threads/Makefile config.status: creating threads/pt2pt/Makefile config.status: creating threads/comm/Makefile config.status: creating threads/comm/testlist config.status: creating threads/init/Makefile config.status: creating threads/mpi_t/Makefile config.status: creating threads/spawn/Makefile config.status: creating threads/rma/Makefile config.status: creating threads/coll/Makefile config.status: creating threads/coll/testlist config.status: creating threads/perf/Makefile config.status: creating threads/part/Makefile config.status: creating errors/Makefile config.status: creating errors/attr/Makefile config.status: creating errors/basic/Makefile config.status: creating errors/coll/Makefile config.status: creating errors/comm/Makefile config.status: creating errors/datatype/Makefile config.status: creating errors/faults/Makefile config.status: creating errors/group/Makefile config.status: creating errors/pt2pt/Makefile config.status: creating errors/rma/Makefile config.status: creating errors/spawn/Makefile config.status: creating errors/spawn/testlist config.status: creating errors/topo/Makefile config.status: creating errors/io/Makefile config.status: creating errors/cxx/Makefile config.status: creating errors/cxx/errhan/Makefile config.status: creating errors/cxx/io/Makefile config.status: creating errors/f77/Makefile config.status: creating errors/f77/io/Makefile config.status: creating errors/f77/io/addsize.h config.status: creating errors/f77/io/iooffset.h config.status: creating errors/f90/Makefile config.status: creating errors/f90/io/Makefile config.status: creating errors/f08/Makefile config.status: creating errors/f08/io/Makefile config.status: creating ckpoint/Makefile config.status: creating ft/Makefile config.status: creating manual/Makefile config.status: creating manual/manyconnect config.status: creating manual/mpi_t/Makefile config.status: creating perf/Makefile config.status: creating testlist config.status: creating cxx/testlist config.status: creating cxx/topo/testlist config.status: creating f77/testlist config.status: creating f90/testlist config.status: creating f08/testlist config.status: creating threads/testlist config.status: creating errors/testlist config.status: creating errors/cxx/testlist config.status: creating errors/f77/testlist config.status: creating errors/f90/testlist config.status: creating impls/testlist config.status: creating f77/rma/testlist config.status: creating f90/rma/testlist config.status: creating f08/rma/testlist config.status: creating impls/Makefile config.status: creating impls/hydra/Makefile config.status: creating impls/hydra/proc_binding.sh config.status: creating impls/mpich/Makefile config.status: creating impls/mpich/testlist config.status: creating impls/mpich/mpi_t/Makefile config.status: creating impls/mpich/comm/Makefile config.status: creating impls/mpich/comm/testlist config.status: creating include/mpitestconf.h config.status: executing gentests commands generating tests for: fkeyvaltype... done generating tests for: bcast... done generating tests for: bcast... done generating tests for: bcast_comm_world_only... done generating tests for: bcast_comm_world_only... done generating tests for: fkeyvaltypex... done generating tests for: packsizex... done generating tests for: pingping... done generating tests for: pingping_barrier... done generating tests for: sendrecv1... done generating tests for: sendself... done generating tests for: pingping... done generating tests for: accfence1... done generating tests for: accfence1... done generating tests for: accpscw1... done generating tests for: accpscw1... done generating tests for: epochtest... done generating tests for: epochtest... done generating tests for: getfence1... done generating tests for: getfence1... done generating tests for: getfence1... done generating tests for: lock_contention_dt... done generating tests for: lock_contention_dt... done generating tests for: lock_dt... done generating tests for: lock_dt_flush... done generating tests for: lock_dt_flushlocal... done generating tests for: lockall_dt... done generating tests for: lockall_dt... done generating tests for: lockall_dt_flush... done generating tests for: lockall_dt_flush... done generating tests for: lockall_dt_flushall... done generating tests for: lockall_dt_flushall... done generating tests for: lockall_dt_flushlocal... done generating tests for: lockall_dt_flushlocal... done generating tests for: lockall_dt_flushlocalall... done generating tests for: lockall_dt_flushlocalall... done generating tests for: putfence1... done generating tests for: putfence1... done generating tests for: putpscw1... done generating tests for: putpscw1... done config.status: executing collcvartests commands config.status: executing depfiles commands config.status: executing libtool commands config.status: executing chmod commands === configuring in dtpools (/home/kmccall/mpich-build-4.0a2/test/mpi/dtpools) configure: running /bin/sh /home/kmccall/mpich-4.0a2/test/mpi/dtpools/configure --disable-option-checking '--prefix=/home/kmccall/mpich-install-4.0a2' 'CC=pgcc' 'CXX=pgc++' '--with-pbs=/opt/torque' '--with-device=ch3:nemesis' '--disable-fortran' '--with-pm=hydra' '-enable-debuginfo' 'main_top_builddir=/home/kmccall/mpich-build-4.0a2' 'main_top_srcdir=/home/kmccall/mpich-4.0a2' 'FROM_MPICH=yes' 'MPICH_THREAD_LEVEL=MPI_THREAD_MULTIPLE' 'MPICH_ENABLE_F77=no' 'MPICH_ENABLE_FC=no' 'MPICH_ENABLE_CXX=yes' 'MPI_NO_SPAWN=' 'MPI_NO_RMA=' 'WRAPPER_CFLAGS=' 'WRAPPER_CPPFLAGS=' 'WRAPPER_LDFLAGS=' 'WRAPPER_LIBS= -lpthread -lm -lrt ' 'WRAPPER_FFLAGS=' 'WRAPPER_FCFLAGS=' 'WRAPPER_CXXFLAGS=' 'CFLAGS= -O2' 'LDFLAGS=' 'LIBS=' 'CPPFLAGS= -I/home/kmccall/mpich-build-4.0a2/src/mpl/include -I/home/kmccall/mpich-4.0a2/src/mpl/include -I/home/kmccall/mpich-4.0a2/modules/json-c -I/home/kmccall/mpich-build-4.0a2/modules/json-c -I/home/kmccall/mpich-4.0a2/modules/hwloc/include -I/home/kmccall/mpich-build-4.0a2/modules/hwloc/include -D_REENTRANT -I/home/kmccall/mpich-build-4.0a2/src/mpi/romio/include' 'F77=gfortran' 'FFLAGS= ' 'MPI_SIZEOF_AINT=8' 'MPI_SIZEOF_OFFSET=8' 'FC=gfortran' 'FCFLAGS= ' 'CXXFLAGS= ' --cache-file=/dev/null --srcdir=/home/kmccall/mpich-4.0a2/test/mpi/dtpools checking for gawk... gawk checking for gcc... pgcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... no checking whether pgcc accepts -g... yes checking for pgcc option to accept ISO C89... none needed checking whether pgcc understands -c and -o together... yes checking for pgcc option to accept ISO C99... none needed checking how to run the C preprocessor... pgcc -E checking for a BSD-compatible install... /usr/bin/install -c checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking whether build environment is sane... yes checking for a thread-safe mkdir -p... mkdir -p checking for style of include used by make... GNU checking whether make supports nested variables... yes checking dependency style of pgcc... pgcc checking whether make supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... yes checking for ar... ar checking the archiver (ar) interface... ar checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for GNU ld... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld -m elf_x86_64 option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from pgcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking for pgcc option to produce PIC... -fpic -DPIC checking if pgcc PIC flag -fpic -DPIC works... yes checking if pgcc static flag -Bstatic works... no checking if pgcc supports -c -o file.o... yes checking if pgcc supports -c -o file.o... (cached) yes checking whether the pgcc linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for stdint.h... (cached) yes checking for sys/types.h... (cached) yes checking for strdup... yes checking whether strdup needs a declaration... no checking for memset... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating include/Makefile config.status: creating src/Makefile config.status: creating dtpoolsconf.h config.status: executing depfiles commands config.status: executing libtool commands *** *** device configuration: ch3:nemesis *** nemesis networks: tcp *** Configuration completed.