[mpich-discuss] Problem with build MPICH2.
Anatoly G
anatolyrishon at gmail.com
Wed Aug 28 02:24:28 CDT 2013
Dear MPICH2.
I want to build MPICH2 package.
I have downloaded mpich2-1.5.tar.gz from
http://www.mcs.anl.gov/research/projects/mpich2staging/goodell/downloads/index.php?s=downloads
My computer OS: Red Hat Enterprise Linux Server release 6.2 (Santiago)
I created folder:
/tmp/MPICH2/src
there I executed: tar xfz mpich2-1.5.tar.gz
and got new folder (/tmp/MPICH2/src/mpich2-1.5) with mpich2 files and
sub-folders.
Now I created folder: /tmp/MPICH2/build
from directory /tmp/MPICH2/build, I executed:
../src/mpich2-1.5/configure --prefix=/tmp/MPICH2/install
--enable-error-checking=runtime --enable-g=dbg CFLAGS=-fPIC CXXFLAGS=-fPIC
FFLAGS=-fpic --enable-threads=runtime --enable-totalview --enable-static
--disable-f77 --disable-fc --no-create --no-recursion | & tee c.txt
Then I tried to execute (still from folder: /tmp/MPICH2/build): make
but got an error:
make: *** No targets specified and no makefile found. Stop.
Then I tried to execute "ls" (still from folder: /tmp/MPICH2/build) and got
following ouput:
config.log config.lt config.status config.system c.txt lib libtool
src
Then I tried to execute "ls" (from folder: /tmp/MPICH2/src/mpich2-1.5) and
got following ouput:
-rw-r--r-- 1 anatol-g ws 43319 Oct 8 2012 aclocal.m4
-rwxr-xr-x 1 anatol-g ws 26809 Sep 27 2012 autogen.sh
-rw-r--r-- 1 anatol-g ws 55773 Oct 8 2012 CHANGES
drwxr-xr-x 2 anatol-g ws 4096 Oct 8 2012 confdb
-rwxr-xr-x 1 anatol-g ws 1802576 Oct 8 2012 configure
-rw-r--r-- 1 anatol-g ws 228771 Oct 4 2012 configure.ac
drwxr-xr-x 3 anatol-g ws 4096 Oct 8 2012 contrib
-rw-r--r-- 1 anatol-g ws 1439 Jul 17 2012 COPYRIGHT
-rw-r--r-- 1 anatol-g ws 8076 Feb 27 2009 COPYRIGHT.rtf
drwxr-xr-x 13 anatol-g ws 4096 Oct 8 2012 doc
drwxr-xr-x 8 anatol-g ws 4096 Oct 8 2012 examples
drwxr-xr-x 5 anatol-g ws 4096 Oct 8 2012 maint
-rw-r--r-- 1 anatol-g ws 17216 Oct 4 2012 Makefile.am
-rw-r--r-- 1 anatol-g ws 2579709 Oct 8 2012 Makefile.in
-rwxr-xr-x 1 anatol-g ws 9886 Nov 12 2010 makewindist.bat
drwxr-xr-x 4 anatol-g ws 4096 Oct 8 2012 man
-rw-r--r-- 1 anatol-g ws 21620 Oct 5 2010 mpich2.def
-rw-r--r-- 1 anatol-g ws 51983 May 2 2012 mpich2-doxygen.in
-rw-r--r-- 1 anatol-g ws 556769 Nov 12 2010 mpich2.sln
-rw-r--r-- 1 anatol-g ws 115749 Jan 24 2011 mpich2s.vcproj
-rw-r--r-- 1 anatol-g ws 234598 Jan 24 2011 mpich2.vcproj
-rw-r--r-- 1 anatol-g ws 15828 Oct 5 2010 mpi.def
-rw-r--r-- 1 anatol-g ws 10010 May 29 2010 mpi.vcproj
-rwxr-xr-x 1 anatol-g ws 4759 May 29 2010 mpl.vcproj
-rw-r--r-- 1 anatol-g ws 38842 Oct 8 2012 README
-rw-r--r-- 1 anatol-g ws 12689 Oct 8 2012 README.envvar
-rw-r--r-- 1 anatol-g ws 20773 Aug 24 2012 README.winbin.rtf
-rw-r--r-- 1 anatol-g ws 3758 Oct 3 2012 RELEASE_NOTES
drwxr-xr-x 19 anatol-g ws 4096 Oct 8 2012 src
-rw-r--r-- 1 anatol-g ws 2622 Oct 8 2012 subsys_include.m4
drwxr-xr-x 9 anatol-g ws 4096 Oct 8 2012 test
-rwxr-xr-x 1 anatol-g ws 335084 Jul 10 2012 winconfigure.wsf
drwxr-xr-x 4 anatol-g ws 4096 Oct 8 2012 www
Can you please advice:
- What I did wrong? (Why I can't perform make, according to manual).
- Is my configure options are correct to build MPICH2 w/o any .so files?
c.txt attached to mail.
Regards,
Anatoly.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.mpich.org/pipermail/discuss/attachments/20130828/f4ff2f4d/attachment.html>
-------------- next part --------------
Configuring MPICH2 version 1.5 with '--prefix=/tmp/MPICH2/install' '--enable-error-checking=runtime' '--enable-g=dbg' 'CFLAGS=-fPIC' 'CXXFLAGS=-fPIC' 'FFLAGS=-fpic' '--enable-threads=runtime' '--enable-totalview' '--enable-static' '--disable-f77' '--disable-fc'
Running on system: Linux boogie 2.6.32-220.23.1.el6.x86_64 #1 SMP Tue Jun 12 11:20:15 EDT 2012 x86_64 x86_64 x86_64 GNU/Linux
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc and cc understand -c and -o together... yes
checking how to run the C preprocessor... gcc -E
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking whether make supports nested variables... yes
checking dependency style of gcc... gcc3
checking whether to enable maintainer-specific portions of Makefiles... yes
checking for ar... ar
checking the archiver (ar) interface... ar
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1966080
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking whether make supports nested variables... (cached) yes
checking for c++... c++
checking whether we are using the GNU C++ compiler... yes
checking whether c++ accepts -g... yes
checking dependency style of c++... gcc3
checking how to run the C++ preprocessor... c++ -E
checking for ld used by c++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the c++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for c++ option to produce PIC... -fPIC -DPIC
checking if c++ PIC flag -fPIC -DPIC works... yes
checking if c++ static flag -static works... no
checking if c++ supports -c -o file.o... yes
checking if c++ supports -c -o file.o... (cached) yes
checking whether the c++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for ifort... no
checking for pgf77... no
checking for af77... no
checking for xlf... no
checking for frt... no
checking for cf77... no
checking for fort77... no
checking for fl32... no
checking for fort... no
checking for ifc... no
checking for efc... no
checking for ftn... no
checking for gfortran... gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... no
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for ifort... no
checking for pgf90... no
checking for pathf90... no
checking for pathf95... no
checking for xlf90... no
checking for xlf95... no
checking for xlf2003... no
checking for gfortran... gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... no
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
configure: RUNNING PREREQ FOR ch3:nemesis
checking for getpagesize... yes
configure: ===== configuring src/mpl =====
configure: running /bin/sh ../../../src/mpich2-1.5/src/mpl/configure --disable-option-checking '--prefix=/tmp/MPICH2/install' '--enable-error-checking=runtime' '--enable-g=dbg' 'CFLAGS=-fPIC ' 'CXXFLAGS=-fPIC ' 'FFLAGS=-fpic ' '--enable-threads=runtime' '--enable-totalview' '--enable-static' '--disable-f77' '--disable-fc' --cache-file=/dev/null --srcdir=../../../src/mpich2-1.5/src/mpl
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... gcc3
checking for ar... ar
checking the archiver (ar) interface... ar
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1966080
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking whether make supports nested variables... yes
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking dependency style of gcc... (cached) gcc3
checking for an ANSI C-conforming const... yes
checking for C/C++ restrict keyword... __restrict
checking for variable argument list macro functionality... yes
checking for gcov... gcov
checking whether the compiler supports __typeof(variable)... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking ctype.h usability... yes
checking ctype.h presence... yes
checking for ctype.h... yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking valgrind.h usability... no
checking valgrind.h presence... no
checking for valgrind.h... no
checking memcheck.h usability... no
checking memcheck.h presence... no
checking for memcheck.h... no
checking valgrind/valgrind.h usability... no
checking valgrind/valgrind.h presence... no
checking for valgrind/valgrind.h... no
checking valgrind/memcheck.h usability... no
checking valgrind/memcheck.h presence... no
checking for valgrind/memcheck.h... no
checking helgrind.h usability... no
checking helgrind.h presence... no
checking for helgrind.h... no
checking valgrind/helgrind.h usability... no
checking valgrind/helgrind.h presence... no
checking for valgrind/helgrind.h... no
checking drd.h usability... no
checking drd.h presence... no
checking for drd.h... no
checking valgrind/drd.h usability... no
checking valgrind/drd.h presence... no
checking for valgrind/drd.h... no
checking whether the valgrind headers are broken or too old... yes
checking for strdup... yes
checking whether strdup needs a declaration... no
checking for snprintf... yes
checking whether snprintf needs a declaration... no
checking for strncmp... yes
checking whether strncmp needs a declaration... no
checking for putenv... yes
checking whether putenv needs a declaration... no
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating localdefs
config.status: creating include/config.h
config.status: include/config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing include/mplconfig.h commands
config.status: creating include/mplconfig.h - prefix MPL for include/config.h defines
config.status: include/mplconfig.h is unchanged
configure: ===== done with src/mpl configure =====
configure: sourcing src/mpl/localdefs
configure: ===== configuring src/openpa =====
configure: running /bin/sh ../../../src/mpich2-1.5/src/openpa/configure --disable-option-checking '--prefix=/tmp/MPICH2/install' --with-atomic-primitives=auto_allow_emulation '--enable-error-checking=runtime' '--enable-g=dbg' 'CFLAGS=-fPIC ' 'CXXFLAGS=-fPIC ' 'FFLAGS=-fpic ' '--enable-threads=runtime' '--enable-totalview' '--enable-static' '--disable-f77' '--disable-fc' --cache-file=/dev/null --srcdir=../../../src/mpich2-1.5/src/openpa
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... gcc3
checking for ar... ar
checking the archiver (ar) interface... ar
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1966080
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking whether make supports nested variables... yes
checking for gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking dependency style of gcc... (cached) gcc3
checking whether to enable assertions... yes
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking atomic.h usability... no
checking atomic.h presence... no
checking for atomic.h... no
checking intrin.h usability... no
checking intrin.h presence... no
checking for intrin.h... no
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for C/C++ restrict keyword... __restrict
checking for inline... inline
checking for an ANSI C-conforming const... yes
checking for pthread_create in -lpthread... yes
checking for pthread_yield... yes
checking if 100 threads can be run at once... yes
checking size of void *... 8
checking size of int... 4
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking if compiler rejects bogus asm statements... yes
checking for support for gcc x86/x86_64 primitives... yes
checking for support for gcc x86 primitives for pre-Pentium 4... yes
checking for support for gcc ia64 primitives... no
checking for support for gcc PowerPC atomics... no
checking for support for gcc SiCortex atomics... no
checking for support for gcc atomic intrinsics... yes
checking for support for Windows NT atomic intrinsics... no
checking for support for Sun atomic operations library... no
checking whether to enable strict fairness checks... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating openpa.pc
config.status: creating src/config.h
config.status: src/config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing src/opa_config.h commands
config.status: creating src/opa_config.h - prefix OPA for src/config.h defines
config.status: src/opa_config.h is unchanged
configure: ===== done with src/openpa configure =====
sourcing /tmp/MPICH2/src/mpich2-1.5/src/pm/hydra/mpich2prereq
checking whether the compiler defines __func__... yes
checking whether the compiler defines __FUNC__... no
checking whether the compiler sets __FUNCTION__... yes
checking whether C compiler accepts option -O2... yes
checking whether C compiler option -O2 works with an invalid prototype program... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking for type of weak symbol alias support... pragma weak
checking whether __attribute__ ((weak)) allowed... yes
checking whether __attribute__ ((weak_import)) allowed... yes
checking whether __attribute__((weak,alias(...))) allowed... no
checking for multiple weak symbol support... yes
checking for shared library (esp. rpath) characteristics of CC... done (results in src/env/cc_shlib.conf)
checking whether the C++ compiler c++ can build an executable... yes
checking whether C++ compiler works with string... yes
checking whether the compiler supports exceptions... yes
checking whether the compiler recognizes bool as a built-in type... yes
checking whether the compiler implements namespaces... yes
checking whether <iostream> available... yes
checking whether the compiler implements the namespace std... yes
checking whether <math> available... no
checking for GNU g++ version... 4 . 4
checking for shared library (esp. rpath) characteristics of CXX... done (results in src/env/cxx_shlib.conf)
checking whether C++ compiler accepts option -O2... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking for perl... /usr/bin/perl
checking for ar... ar
checking for ranlib... ranlib
checking for killall... killall
checking whether install works... yes
checking whether mkdir -p works... yes
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for bash... /bin/bash
checking whether /bin/bash supports arrays... yes
checking for doctext... false
checking for an ANSI C-conforming const... yes
checking for working volatile... yes
checking for C/C++ restrict keyword... __restrict
checking for inline... inline
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking whether byte ordering is bigendian... no
checking whether C compiler allows unaligned doubles... yes
checking whether gcc supports __func__... yes
checking whether long double is supported... yes
checking whether long long is supported... yes
checking for max C struct integer alignment... eight
checking for max C struct floating point alignment... sixteen
checking for max C struct alignment of structs with doubles... eight
checking for max C struct floating point alignment with long doubles... sixteen
configure: WARNING: Structures containing long doubles may be aligned differently from structures with floats or longs. MPICH2 does not handle this case automatically and you should avoid assumed extents for structures containing float types.
checking if alignment of structs with doubles is based on position... no
checking if alignment of structs with long long ints is based on position... no
checking if double alignment breaks rules, find actual alignment... no
checking for alignment restrictions on pointers... int or better
checking size of char... 1
checking size of unsigned char... 1
checking size of short... 2
checking size of unsigned short... 2
checking size of int... 4
checking size of unsigned int... 4
checking size of long... 8
checking size of unsigned long... 8
checking size of long long... 8
checking size of unsigned long long... 8
checking size of float... 4
checking size of double... 8
checking size of long double... 16
checking size of void *... 8
checking for ANSI C header files... (cached) yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking size of wchar_t... 4
checking size of float_int... 8
checking size of double_int... 16
checking size of long_int... 16
checking size of short_int... 8
checking size of two_int... 8
checking size of long_double_int... 32
checking sys/bitypes.h usability... yes
checking sys/bitypes.h presence... yes
checking for sys/bitypes.h... yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for int8_t... yes
checking for int16_t... yes
checking for int32_t... yes
checking for int64_t... yes
checking for uint8_t... yes
checking for uint16_t... yes
checking for uint32_t... yes
checking for uint64_t... yes
checking stdbool.h usability... yes
checking stdbool.h presence... yes
checking for stdbool.h... yes
checking complex.h usability... yes
checking complex.h presence... yes
checking for complex.h... yes
checking size of _Bool... 1
checking size of float _Complex... 8
checking size of double _Complex... 16
checking size of long double _Complex... 32
checking for _Bool... yes
checking for float _Complex... yes
checking for double _Complex... yes
checking for long double _Complex... yes
checking size of bool... 1
checking complex usability... yes
checking complex presence... yes
checking for complex... yes
checking size of Complex... 8
checking size of DoubleComplex... 16
checking size of LongDoubleComplex... 32
checking for alignment restrictions on int64_t... no
checking for alignment restrictions on int32_t... no
checking size of MPIR_Bsend_data_t... 88
checking for gcc __asm__ and pentium cmpxchgl instruction... no
checking for gcc __asm__ and AMD x86_64 cmpxchgq instruction... yes
checking for gcc __asm__ and IA64 xchg4 instruction... no
checking for gcov... gcov
checking for ANSI C header files... (cached) yes
checking for stdlib.h... (cached) yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking for sys/types.h... (cached) yes
checking for string.h... (cached) yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking for stddef.h... (cached) yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
checking endian.h usability... yes
checking endian.h presence... yes
checking for endian.h... yes
checking assert.h usability... yes
checking assert.h presence... yes
checking for assert.h... yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking for sys/uio.h... yes
checking for size_t... yes
checking for setitimer... yes
checking for alarm... yes
checking for vsnprintf... yes
checking for vsprintf... yes
checking whether vsnprintf needs a declaration... no
checking for strerror... yes
checking for strncasecmp... yes
checking whether strerror_r is declared... yes
checking for strerror_r... yes
checking whether strerror_r returns char *... no
checking whether strerror_r needs a declaration... no
checking for snprintf... yes
checking whether snprintf needs a declaration... no
checking for qsort... yes
checking for va_copy... yes
checking for variable argument list macro functionality... yes
checking for working alloca.h... yes
checking for alloca... yes
checking for strdup... yes
checking whether strdup needs a declaration... no
checking for mkstemp... yes
checking whether mkstemp needs a declaration... no
checking for fdopen... yes
checking whether fdopen needs a declaration... yes
checking for putenv... yes
checking whether putenv needs a declaration... no
checking for clock_gettime... no
checking for clock_getres... no
checking for gethrtime... no
checking for mach_absolute_time... no
checking for gettimeofday... yes
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for pthread_key_create in -lpthread... yes
checking for pthread_yield... yes
checking for pthread_key_create... yes
checking for pthread_cleanup_push... no
checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no
checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE_NP... yes
checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE... yes
checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK_NP... yes
checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK... yes
checking whether pthread_mutexattr_settype needs a declaration... no
checking for thread local storage specifier... __thread
checking for getpid... yes
checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking for unistd.h... (cached) yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking for sched_yield... yes
checking for yield... no
checking for usleep... yes
checking for sleep... yes
checking for select... yes
checking whether usleep needs a declaration... no
checking for sched_setaffinity... yes
checking for sched_getaffinity... yes
checking for bindprocessor... no
checking for thread_policy_set... no
checking whether cpu_set_t available... yes
checking whether the CPU_SET and CPU_ZERO macros are defined... no
checking for unistd.h... (cached) yes
checking for string.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for sys/socket.h... (cached) yes
checking for strings.h... (cached) yes
checking for assert.h... (cached) yes
checking for snprintf... (cached) yes
checking whether snprintf needs a declaration... (cached) no
checking for strncasecmp... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for sys/socket.h... (cached) yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking netinet/tcp.h usability... yes
checking netinet/tcp.h presence... yes
checking for netinet/tcp.h... yes
checking sys/un.h usability... yes
checking sys/un.h presence... yes
checking for sys/un.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking for library containing socket... none required
checking for library containing gethostbyname... none required
checking for socket... yes
checking for setsockopt... yes
checking for gethostbyname... yes
checking whether socklen_t is defined (in sys/socket.h if present)... yes
checking whether struct hostent contains h_addr_list... yes
checking whether __attribute__ allowed... (cached) yes
checking whether __attribute__((format)) allowed... (cached) yes
configure: RUNNING CONFIGURE FOR CH3 DEVICE
checking for assert.h... (cached) yes
checking for limits.h... (cached) yes
checking for string.h... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/uio.h... (cached) yes
checking uuid/uuid.h usability... no
checking uuid/uuid.h presence... no
checking for uuid/uuid.h... no
checking time.h usability... yes
checking time.h presence... yes
checking for time.h... yes
checking ctype.h usability... yes
checking ctype.h presence... yes
checking for ctype.h... yes
checking for unistd.h... (cached) yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking for sys/socket.h... (cached) yes
checking for net/if.h... yes
checking for pid_t... yes
checking for inet_pton... yes
checking for gethostname... yes
checking whether gethostname needs a declaration... no
checking for CFUUIDCreate... no
checking for uuid_generate... no
checking for time... yes
checking for OpenPA atomic primitive availability... yes
checking whether CPP accepts variable length argument lists... yes
checking whether byte ordering is bigendian... (cached) no
configure: RUNNING CONFIGURE FOR ch3:nemesis
checking for net/if.h... yes
checking for assert.h... (cached) yes
checking for netdb.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sched.h... (cached) yes
checking sys/mman.h usability... yes
checking sys/mman.h presence... yes
checking for sys/mman.h... yes
checking sys/ioctl.h usability... yes
checking sys/ioctl.h presence... yes
checking for sys/ioctl.h... yes
checking for sys/socket.h... (cached) yes
checking sys/sockio.h usability... no
checking sys/sockio.h presence... no
checking for sys/sockio.h... no
checking for sys/types.h... (cached) yes
checking for errno.h... (cached) yes
checking sys/ipc.h usability... yes
checking sys/ipc.h presence... yes
checking for sys/ipc.h... yes
checking sys/shm.h usability... yes
checking sys/shm.h presence... yes
checking for sys/shm.h... yes
checking for netinet/in.h... (cached) yes
checking signal.h usability... yes
checking signal.h presence... yes
checking for signal.h... yes
checking for signal... yes
checking for mkstemp... (cached) yes
checking for rand... yes
checking for srand... yes
checking for mmap... yes
checking for munmap... yes
configure: Using a memory-mapped file for shared memory
checking whether struct hostent contains h_addr_list... (cached) yes
checking whether we can use struct ifconf... yes
checking whether we can use struct ifreq... yes
checking knem_io.h usability... no
checking knem_io.h presence... no
checking for knem_io.h... no
configure: ===== configuring src/mpi/romio =====
configure: running /bin/sh ../../../../src/mpich2-1.5/src/mpi/romio/configure --disable-option-checking '--prefix=/tmp/MPICH2/install' '--enable-error-checking=runtime' '--enable-g=dbg' 'CFLAGS=-fPIC -g -O2' 'CXXFLAGS=-fPIC -g -O2' 'FFLAGS=-fpic -g' '--enable-threads=runtime' '--enable-totalview' '--enable-static' '--disable-f77' '--disable-fc' --cache-file=/dev/null --srcdir=../../../../src/mpich2-1.5/src/mpi/romio
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... yes
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... gcc3
checking the archiver (ar) interface... ar
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1966080
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld -m elf_x86_64 option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking whether make supports nested variables... (cached) yes
Configuring with args dummy mt
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for architecture... LINUX
ROMIO home directory is ../../../../src/mpich2-1.5/src/mpi/romio
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking dependency style of gcc... (cached) gcc3
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... no
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking how to run the C preprocessor... gcc -E
checking for memalign... yes
checking for inline... inline
checking how to run the C preprocessor... gcc -E
checking for unistd.h... (cached) yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for sys/types.h... (cached) yes
checking for u_char... yes
checking for u_short... yes
checking for u_int... yes
checking for u_long... yes
checking sys/attr.h usability... no
checking sys/attr.h presence... no
checking for sys/attr.h... no
checking size of int... 4
checking size of void *... 8
checking for int large enough for pointers... no
checking size of long long... 8
Overriding Array test for MPICH2
checking for weak symbol support... pragma weak
checking that weak symbols are visible to other files... yes
checking that the compiler correctly implements weak symbols... yes
checking whether struct flock compatible with MPI_Offset... yes
checking for pvfs2-config... notfound
checking configured file systems... testfs ufs nfs
configure: WARNING: File locks may not work with NFS. See the Installation and
users manual for instructions on testing and if necessary fixing this
checking for library containing aio_write... -lrt
checking signal.h usability... yes
checking signal.h presence... yes
checking for signal.h... yes
checking if aio.h exists and can be compiled... yes
checking if sys/aio.h exists and can be compiled... no
checking whether aio routines can be used... yes
checking for obsolete two-argument aio_write... no
checking for obsolete two-argument aio_suspend... no
checking for aio_fildes member of aiocb structure... yes
checking for aio_whence member of aiocb structure... no
checking for aio_handle member of aiocb structure... no
checking for aio_reqprio member of aiocb structure... yes
checking for aio_sigevent member of aiocb structure... yes
checking sys/vfs.h usability... yes
checking sys/vfs.h presence... yes
checking for sys/vfs.h... yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking sys/mount.h usability... yes
checking sys/mount.h presence... yes
checking for sys/mount.h... yes
checking sys/statvfs.h usability... yes
checking sys/statvfs.h presence... yes
checking for sys/statvfs.h... yes
checking whether struct statfs properly defined... yes
checking for f_fstypename member of statfs structure... no
checking for sys/stat.h... (cached) yes
checking for sys/types.h... (cached) yes
checking for unistd.h... (cached) yes
checking for stat... yes
checking for st_fstype member of stat structure... no
checking for sys/types.h... (cached) yes
checking for sys/statvfs.h... (cached) yes
checking for sys/vfs.h... (cached) yes
checking for statvfs... yes
checking for f_basetype member of statvfs structure... no
checking for unistd.h... (cached) yes
checking for large file defines... yes
checking whether off64_t is an scalar type... yes
checking for strerror... yes
checking for doctext... false
checking for strdup... yes
checking whether strdup needs a declaration... no
checking for snprintf... yes
checking whether snprintf needs a declaration... no
checking for lstat... yes
checking whether lstat needs a declaration... yes
checking for readlink... yes
checking whether readlink needs a declaration... no
checking for fsync... yes
checking whether fsync needs a declaration... no
checking for ftruncate... yes
checking whether ftruncate needs a declaration... no
checking for lseek64... yes
checking whether lseek64 needs a declaration... no
checking for unistd.h... (cached) yes
checking for large file defines... yes
setting SYSDEP_INC to
checking for C/C++ restrict keyword... __restrict
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking for gcov... gcov
setting CC to gcc
setting F77 to :
setting TEST_CC to $(bindir)/mpicc
setting TEST_F77 to $(bindir)/mpif77
setting CFLAGS to -fPIC -g -O2 -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64
setting USER_CFLAGS to
setting USER_FFLAGS to
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating localdefs
config.status: creating mpi2-other/info/Makefile
config.status: creating mpi2-other/array/Makefile
config.status: creating test/Makefile
config.status: creating test/misc.c
config.status: creating test/large_file.c
config.status: creating test/runtests
config.status: creating test-internal/Makefile
config.status: creating util/romioinstall
config.status: creating include/mpio.h
config.status: creating include/mpiof.h
config.status: creating mpi2-other/info/fortran/Makefile
config.status: creating mpi2-other/array/fortran/Makefile
config.status: creating test/fmisc.f
config.status: creating test/fcoll_test.f
config.status: creating test/pfcoll_test.f
config.status: creating test/fperf.f
config.status: creating adio/include/romioconf.h
config.status: adio/include/romioconf.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing default-1 commands
configure: ===== done with src/mpi/romio configure =====
configure: sourcing src/mpi/romio/localdefs
configure: ===== configuring src/pm/hydra =====
configure: running /bin/sh ../../../../src/mpich2-1.5/src/pm/hydra/configure --disable-option-checking '--prefix=/tmp/MPICH2/install' '--enable-error-checking=runtime' '--enable-g=dbg' 'CFLAGS=-fPIC -g -O2' 'CXXFLAGS=-fPIC -g -O2' 'FFLAGS=-fpic -g' '--enable-threads=runtime' '--enable-totalview' '--enable-static' '--disable-f77' '--disable-fc' --cache-file=/dev/null --srcdir=../../../../src/mpich2-1.5/src/pm/hydra
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking target system type... x86_64-unknown-linux-gnu
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking for fgrep... /bin/grep -F
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking the archiver (ar) interface... ar
checking whether make supports nested variables... yes
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking whether gcc and cc understand -c and -o together... yes
checking for an ANSI C-conforming const... yes
checking for working volatile... yes
checking for C/C++ restrict keyword... __restrict
checking for inline... inline
checking size of unsigned long... 8
checking for size_t... yes
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for ld used by gcc... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1966080
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld -m elf_x86_64 option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for variable argument list macro functionality... yes
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking whether the compiler defines __func__... yes
checking whether the compiler defines __FUNC__... no
checking whether the compiler sets __FUNCTION__... yes
checking for doxygen... /usr/bin/doxygen
checking for gcov... gcov
checking for unistd.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking for sys/types.h... (cached) yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking for sys/stat.h... (cached) yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking netinet/tcp.h usability... yes
checking netinet/tcp.h presence... yes
checking for netinet/tcp.h... yes
checking sys/un.h usability... yes
checking sys/un.h presence... yes
checking for sys/un.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking time.h usability... yes
checking time.h presence... yes
checking for time.h... yes
checking ifaddrs.h usability... yes
checking ifaddrs.h presence... yes
checking for ifaddrs.h... yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking poll.h usability... yes
checking poll.h presence... yes
checking for poll.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking for netdb.h... (cached) yes
checking winsock2.h usability... no
checking winsock2.h presence... no
checking for winsock2.h... no
checking windows.h usability... no
checking windows.h presence... no
checking for windows.h... no
checking for socket in -lsocket... no
checking for gethostbyname in -lnsl... yes
checking for gettimeofday... yes
checking for time... yes
checking for strdup... yes
checking for sigaction... yes
checking for signal... yes
checking for usleep... yes
checking for alloca... no
checking for unsetenv... yes
checking for strerror... yes
checking for strsignal... yes
checking for stat... yes
checking for getifaddrs... yes
checking for fcntl... yes
checking for alarm... yes
checking for isatty... yes
checking for inet_ntop... yes
checking for getpgid... yes
checking for setsid... yes
checking for environ in unistd.h... yes
checking bootstrap server... user,ssh,rsh,fork,slurm,ll,lsf,sge,pbs,manual,persist
checking tm.h usability... no
checking tm.h presence... no
checking for tm.h... no
checking for tm_init in -ltorque... no
checking process manager... pmiserv
checking user interface... mpich
checking desired processor topology libraries... hwloc
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
###
### Configuring hwloc core
###
checking hwloc building mode... embedded
configure: hwloc builddir: /tmp/MPICH2/build/src/pm/hydra/tools/topo/hwloc/hwloc
configure: hwloc srcdir: /tmp/MPICH2/src/mpich2-1.5/src/pm/hydra/tools/topo/hwloc/hwloc
configure: Detected VPATH build
checking if want hwloc maintainer support... disabled (embedded mode)
checking for hwloc directory prefix... tools/topo/hwloc/hwloc/
checking for hwloc symbol prefix... hwloc_
checking size of void *... 8
checking which OS support to include... Linux
checking which CPU support to include... x86_64
checking size of unsigned long... (cached) 8
checking size of unsigned int... 4
checking for the C compiler vendor... gnu
checking for __attribute__... yes
checking for __attribute__(aligned)... yes
checking for __attribute__(always_inline)... yes
checking for __attribute__(cold)... yes
checking for __attribute__(const)... yes
checking for __attribute__(deprecated)... yes
checking for __attribute__(format)... yes
checking for __attribute__(hot)... yes
checking for __attribute__(malloc)... yes
checking for __attribute__(may_alias)... yes
checking for __attribute__(no_instrument_function)... yes
checking for __attribute__(nonnull)... yes
checking for __attribute__(noreturn)... yes
checking for __attribute__(packed)... yes
checking for __attribute__(pure)... yes
checking for __attribute__(sentinel)... yes
checking for __attribute__(unused)... yes
checking for __attribute__(warn_unused_result)... yes
checking for __attribute__(weak_alias)... yes
checking if gcc supports -fvisibility=hidden... yes
checking whether to enable symbol visibility... yes (via -fvisibility=hidden)
configure: WARNING: "-fvisibility=hidden" has been added to the hwloc CFLAGS
checking whether the C compiler rejects function calls with too many arguments... yes
checking whether the C compiler rejects function calls with too few arguments... yes
checking for unistd.h... (cached) yes
checking dirent.h usability... yes
checking dirent.h presence... yes
checking for dirent.h... yes
checking for strings.h... (cached) yes
checking for strncasecmp... yes
checking whether function strncasecmp is declared... yes
checking for strftime... yes
checking for setlocale... yes
checking for stdint.h... (cached) yes
checking sys/mman.h usability... yes
checking sys/mman.h presence... yes
checking for sys/mman.h... yes
checking for KAFFINITY... no
checking for PROCESSOR_CACHE_TYPE... no
checking for CACHE_DESCRIPTOR... no
checking for LOGICAL_PROCESSOR_RELATIONSHIP... no
checking for RelationProcessorPackage... no
checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION... no
checking for GROUP_AFFINITY... no
checking for PROCESSOR_RELATIONSHIP... no
checking for NUMA_NODE_RELATIONSHIP... no
checking for CACHE_RELATIONSHIP... no
checking for PROCESSOR_GROUP_INFO... no
checking for GROUP_RELATIONSHIP... no
checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... no
checking for PSAPI_WORKING_SET_EX_BLOCK... no
checking for PSAPI_WORKING_SET_EX_INFORMATION... no
checking for main in -lgdi32... no
checking for windows.h... (cached) no
checking sys/lgrp_user.h usability... no
checking sys/lgrp_user.h presence... no
checking for sys/lgrp_user.h... no
checking kstat.h usability... no
checking kstat.h presence... no
checking for kstat.h... no
checking whether fabsf is declared... yes
checking for fabsf in -lm... yes
checking picl.h usability... no
checking picl.h presence... no
checking for picl.h... no
checking whether _SC_NPROCESSORS_ONLN is declared... yes
checking whether _SC_NPROCESSORS_CONF is declared... yes
checking whether _SC_NPROC_ONLN is declared... no
checking whether _SC_NPROC_CONF is declared... no
checking whether _SC_LARGE_PAGESIZE is declared... no
checking mach/mach_host.h usability... no
checking mach/mach_host.h presence... no
checking for mach/mach_host.h... no
checking mach/mach_init.h usability... no
checking mach/mach_init.h presence... no
checking for mach/mach_init.h... no
checking for sys/param.h... (cached) yes
checking for sys/sysctl.h... yes
checking whether CTL_HW is declared... no
checking whether HW_NCPU is declared... no
checking for sysctl... yes
checking for sysctlbyname... no
checking for pthread_t... yes
checking whether function sched_setaffinity is declared... yes
checking for old prototype of sched_setaffinity... no
checking for working CPU_SET... yes
checking for working CPU_SET_S... yes
checking for working _syscall3... no
checking for KERRIGHED... no
checking for lib... no
checking for bash... /bin/sh
checking for ffs... yes
checking whether function ffs is declared... yes
checking for ffsl... yes
checking whether function ffsl is declared... yes
checking for fls... no
checking for flsl... no
checking for clz... no
checking for clzl... no
checking for openat... yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking for getpagesize... yes
checking for memalign... yes
checking for posix_memalign... yes
checking whether getpagesize needs a declaration... no
checking sys/utsname.h usability... yes
checking sys/utsname.h presence... yes
checking for sys/utsname.h... yes
checking for uname... yes
checking pthread_np.h usability... no
checking pthread_np.h presence... no
checking for pthread_np.h... no
checking whether pthread_setaffinity_np is declared... yes
checking whether pthread_getaffinity_np is declared... yes
checking for sched_setaffinity... yes
checking for sys/cpuset.h... no
checking for cpuset_setaffinity... no
checking for library containing pthread_getthrds_np... no
checking numaif.h usability... no
checking numaif.h presence... no
checking for numaif.h... no
checking for PCI... no
checking pci/pci.h usability... no
checking pci/pci.h presence... no
checking for pci/pci.h... no
checking for LIBXML2... yes
checking for xmlNewDoc... yes
checking for final LIBXML2 support... yes
checking for cpuid... yes
checking available processor topology libraries... hwloc
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for pthread_key_create in -lpthread... yes
checking checkpointing library... blcr
checking libcr.h usability... no
checking libcr.h presence... no
checking for libcr.h... no
checking for cr_init in -lcr... no
checking demux engine... poll,select,port
checking for poll... yes
checking for select... yes
checking debugging support... dbg
checking error checking... runtime
checking warnings... no
checking profiling... yes
checking libftb.h usability... no
checking libftb.h presence... no
checking for libftb.h... no
checking for FTB_Connect in -lftb... no
checking for strsignal... (cached) yes
checking whether strsignal needs a declaration... no
checking for sigaction... (cached) yes
checking for signal... (cached) yes
checking for sigset... yes
checking for struct sigaction and sa_handler... yes
checking for gethostname... yes
checking whether gethostname needs a declaration... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating tools/topo/hwloc/hwloc/Makefile
config.status: creating tools/topo/hwloc/hwloc/include/Makefile
config.status: creating tools/topo/hwloc/hwloc/src/Makefile
config.status: creating Makefile
config.status: creating tools/bootstrap/src/bsci_init.c
config.status: creating hydra-doxygen.cfg
config.status: creating include/hydra_config.h
config.status: creating tools/topo/hwloc/hwloc/include/private/autogen/config.h
config.status: tools/topo/hwloc/hwloc/include/private/autogen/config.h is unchanged
config.status: creating tools/topo/hwloc/hwloc/include/hwloc/autogen/config.h
config.status: tools/topo/hwloc/hwloc/include/hwloc/autogen/config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
configure: ===== done with src/pm/hydra configure =====
configure: ===== configuring src/mpe2 =====
configure: running /bin/sh ../../../src/mpich2-1.5/src/mpe2/configure --disable-option-checking '--prefix=/tmp/MPICH2/install' '--enable-error-checking=runtime' '--enable-g=dbg' 'CFLAGS=-fPIC -g -O2' 'CXXFLAGS=-fPIC -g -O2' 'FFLAGS=-fpic -g' '--enable-threads=runtime' '--enable-totalview' '--enable-static' '--disable-f77' '--disable-fc' --cache-file=/dev/null --srcdir=../../../src/mpich2-1.5/src/mpe2
Configuring MPE Profiling System with '--disable-option-checking' '--prefix=/tmp/MPICH2/install' '--enable-error-checking=runtime' '--enable-g=dbg' 'CFLAGS=-fPIC -g -O2' 'CXXFLAGS=-fPIC -g -O2' 'FFLAGS=-fpic -g' '--enable-threads=runtime' '--enable-totalview' '--enable-static' '--disable-f77' '--disable-fc' '--cache-file=/dev/null' '--srcdir=../../../src/mpich2-1.5/src/mpe2' 'CC=gcc' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/MPICH2/build/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/openpa/src -I/tmp/MPICH2/build/src/openpa/src -I/tmp/MPICH2/build/src/mpi/romio/include' 'F77=gfortran'
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
This MPE build is part of the MPICH2 build
checking for leftover Makefiles in subpackages ... "src/misc" "src/callstack" "src/logging" "src/wrappers" "src/graphics" "src/collchk" "src/slog2sdk" cleaned
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether MPI_CC has been set ... gcc -I/tmp/MPICH2/src/mpich2-1.5/src/include -I/tmp/MPICH2/build/src/include
checking how to run the C preprocessor... gcc -E
checking whether ln -s works... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether install works... yes
checking for ranlib... ranlib
checking whether install breaks libraries... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating sbin/mpetestlink
config.status: creating sbin/mpetestexec
config.status: creating sbin/mpetestexeclog
config.status: creating sbin/mpeinstall
config.status: creating sbin/mpecheckinstall
config.status: WARNING: '../../../src/mpich2-1.5/src/mpe2/sbin/mpecheckinstall.in' seems to ignore the --datarootdir setting
config.status: creating sbin/mpecheckbuild
config.status: creating etc/mpe_help.conf
config.status: creating etc/mpe_f77env.conf
config.status: creating mpe_conf.h
config.status: mpe_conf.h is unchanged
config.status: executing default-1 commands
=== configuring in src/misc (/tmp/MPICH2/build/src/mpe2/src/misc)
configure: running /bin/sh ../../../../../src/mpich2-1.5/src/mpe2/src/misc/configure --disable-option-checking '--prefix=/tmp/MPICH2/install' '--enable-error-checking=runtime' '--enable-g=dbg' 'CFLAGS=-fPIC -g -O2' 'CXXFLAGS=-fPIC -g -O2' 'FFLAGS=-fpic -g' '--enable-threads=runtime' '--enable-totalview' '--enable-static' '--disable-f77' '--disable-fc' 'CC=gcc' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/MPICH2/build/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/openpa/src -I/tmp/MPICH2/build/src/openpa/src -I/tmp/MPICH2/build/src/mpi/romio/include' 'F77=gfortran' --cache-file=/dev/null --srcdir=../../../../../src/mpich2-1.5/src/mpe2/src/misc
Configuring MPE Miscellaneous Library with '--disable-option-checking' '--prefix=/tmp/MPICH2/install' '--enable-error-checking=runtime' '--enable-g=dbg' 'CFLAGS=-fPIC -g -O2' 'CXXFLAGS=-fPIC -g -O2' 'FFLAGS=-fpic -g' '--enable-threads=runtime' '--enable-totalview' '--enable-static' '--disable-f77' '--disable-fc' 'CC=gcc' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/MPICH2/build/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/openpa/src -I/tmp/MPICH2/build/src/openpa/src -I/tmp/MPICH2/build/src/mpi/romio/include' 'F77=gfortran' '--cache-file=/dev/null' '--srcdir=../../../../../src/mpich2-1.5/src/mpe2/src/misc'
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ar... ar
checking for ranlib... ranlib
checking whether gcc and cc understand -c and -o together... yes
checking how to run the C preprocessor... gcc -E
checking for dbx... no
checking for gdb... /usr/bin/gdb
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for sysinfo... yes
checking for uname... yes
checking for gethostbyname... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for unistd.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking sys/systeminfo.h usability... no
checking sys/systeminfo.h presence... no
checking for sys/systeminfo.h... no
checking for sys/types.h... (cached) yes
checking for sighandler_t... no
checking for kill... yes
checking whether kill needs a declaration... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/dbxerr.c
config.status: creating mpe_misc_conf.h
=== configuring in src/callstack (/tmp/MPICH2/build/src/mpe2/src/callstack)
configure: running /bin/sh ../../../../../src/mpich2-1.5/src/mpe2/src/callstack/configure --disable-option-checking '--prefix=/tmp/MPICH2/install' '--enable-error-checking=runtime' '--enable-g=dbg' 'CFLAGS=-fPIC -g -O2' 'CXXFLAGS=-fPIC -g -O2' 'FFLAGS=-fpic -g' '--enable-threads=runtime' '--enable-totalview' '--enable-static' '--disable-f77' '--disable-fc' 'CC=gcc' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/MPICH2/build/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/openpa/src -I/tmp/MPICH2/build/src/openpa/src -I/tmp/MPICH2/build/src/mpi/romio/include' 'F77=gfortran' --cache-file=/dev/null --srcdir=../../../../../src/mpich2-1.5/src/mpe2/src/callstack
Configuring MPE CallStack Library with '--disable-option-checking' '--prefix=/tmp/MPICH2/install' '--enable-error-checking=runtime' '--enable-g=dbg' 'CFLAGS=-fPIC -g -O2' 'CXXFLAGS=-fPIC -g -O2' 'FFLAGS=-fpic -g' '--enable-threads=runtime' '--enable-totalview' '--enable-static' '--disable-f77' '--disable-fc' 'CC=gcc' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/MPICH2/build/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/openpa/src -I/tmp/MPICH2/build/src/openpa/src -I/tmp/MPICH2/build/src/mpi/romio/include' 'F77=gfortran' '--cache-file=/dev/null' '--srcdir=../../../../../src/mpich2-1.5/src/mpe2/src/callstack'
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ar... ar
checking for ranlib... ranlib
checking whether gcc and cc understand -c and -o together... yes
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking execinfo.h usability... yes
checking execinfo.h presence... yes
checking for execinfo.h... yes
checking whether <execinfo.h> defines backtrace_symbols_fd() ... yes
checking if <execinfo.h> links with -Wl,--export-dynamic ... yes
checking for fdopen... yes
checking whether fdopen needs a declaration... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating include/mpe_callstack.h
config.status: creating etc/mpe_callstack_ldflags.conf
config.status: creating bin/bt2line
config.status: creating mpe_callstack_conf.h
config.status: executing default-1 commands
=== configuring in src/logging (/tmp/MPICH2/build/src/mpe2/src/logging)
configure: running /bin/sh ../../../../../src/mpich2-1.5/src/mpe2/src/logging/configure --disable-option-checking '--prefix=/tmp/MPICH2/install' '--enable-error-checking=runtime' '--enable-g=dbg' 'CFLAGS=-fPIC -g -O2' 'CXXFLAGS=-fPIC -g -O2' 'FFLAGS=-fpic -g' '--enable-threads=runtime' '--enable-totalview' '--enable-static' '--disable-f77' '--disable-fc' 'CC=gcc' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/MPICH2/build/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/openpa/src -I/tmp/MPICH2/build/src/openpa/src -I/tmp/MPICH2/build/src/mpi/romio/include' 'F77=gfortran' --cache-file=/dev/null --srcdir=../../../../../src/mpich2-1.5/src/mpe2/src/logging
Configuring MPE Logging Library and Tools with '--disable-option-checking' '--prefix=/tmp/MPICH2/install' '--enable-error-checking=runtime' '--enable-g=dbg' 'CFLAGS=-fPIC -g -O2' 'CXXFLAGS=-fPIC -g -O2' 'FFLAGS=-fpic -g' '--enable-threads=runtime' '--enable-totalview' '--enable-static' '--disable-f77' '--disable-fc' 'CC=gcc' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/MPICH2/build/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/openpa/src -I/tmp/MPICH2/build/src/openpa/src -I/tmp/MPICH2/build/src/mpi/romio/include' 'F77=gfortran' '--cache-file=/dev/null' '--srcdir=../../../../../src/mpich2-1.5/src/mpe2/src/logging'
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ar... ar
checking for ranlib... ranlib
checking whether gcc and cc understand -c and -o together... yes
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking whether byte ordering is bigendian... no
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for sys/types.h... (cached) yes
checking sys/bitypes.h usability... yes
checking sys/bitypes.h presence... yes
checking for sys/bitypes.h... yes
checking for sys/stat.h... (cached) yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking for header that defines C99 integer types, intXX_t ... <stdint.h>
checking for inttypes.h... (cached) yes
checking whether <inttypes.h> defines the PRIdXX macros ... yes
checking if <stdint.h> can be behind system headers ... yes
checking size of void *... 8
checking for address-sized integer ... CLOG_int64_t
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for gethostname... yes
checking whether gethostname needs a declaration... no
checking for snprintf... yes
checking whether snprintf needs a declaration... no
checking for mkstemp... yes
checking whether mkstemp needs a declaration... no
checking for srand48... yes
checking whether srand48 needs a declaration... no
checking for lrand48... yes
checking whether lrand48 needs a declaration... no
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for O_LARGEFILE for open() ... needs _LARGEFILE64_SOURCE
checking for O_BINARY for open() ... no
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for pthread_mutex_lock in -lpthread... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating include/clog_inttypes.h
config.status: creating include/mpi_null.h
config.status: creating include/mpe_log_thread.h
config.status: creating etc/mpe_log.conf
config.status: creating etc/mpe_nolog.conf
config.status: creating etc/mpe_log_postlib.conf
config.status: creating mpe_logging_conf.h
=== configuring in src/wrappers (/tmp/MPICH2/build/src/mpe2/src/wrappers)
configure: running /bin/sh ../../../../../src/mpich2-1.5/src/mpe2/src/wrappers/configure --disable-option-checking '--prefix=/tmp/MPICH2/install' '--enable-error-checking=runtime' '--enable-g=dbg' 'CFLAGS=-fPIC -g -O2' 'CXXFLAGS=-fPIC -g -O2' 'FFLAGS=-fpic -g' '--enable-threads=runtime' '--enable-totalview' '--enable-static' '--disable-f77' '--disable-fc' 'CC=gcc' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/MPICH2/build/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/openpa/src -I/tmp/MPICH2/build/src/openpa/src -I/tmp/MPICH2/build/src/mpi/romio/include' 'F77=gfortran' --cache-file=/dev/null --srcdir=../../../../../src/mpich2-1.5/src/mpe2/src/wrappers
Configuring MPE Wrapper Libraries For MPI with '--disable-option-checking' '--prefix=/tmp/MPICH2/install' '--enable-error-checking=runtime' '--enable-g=dbg' 'CFLAGS=-fPIC -g -O2' 'CXXFLAGS=-fPIC -g -O2' 'FFLAGS=-fpic -g' '--enable-threads=runtime' '--enable-totalview' '--enable-static' '--disable-f77' '--disable-fc' 'CC=gcc' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/MPICH2/build/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/openpa/src -I/tmp/MPICH2/build/src/openpa/src -I/tmp/MPICH2/build/src/mpi/romio/include' 'F77=gfortran' '--cache-file=/dev/null' '--srcdir=../../../../../src/mpich2-1.5/src/mpe2/src/wrappers'
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ar... ar
checking for ranlib... ranlib
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking for size_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking for stdarg is correct... yes
checking if compiler accepts prototypes ... yes
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for safe PMPI invocations ... no
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating etc/mpe_f77env.conf
config.status: creating etc/mpe_mpilog.conf
config.status: creating etc/mpe_mpitrace.conf
config.status: creating mpe_wrappers_conf.h
=== configuring in src/graphics (/tmp/MPICH2/build/src/mpe2/src/graphics)
configure: running /bin/sh ../../../../../src/mpich2-1.5/src/mpe2/src/graphics/configure --disable-option-checking '--prefix=/tmp/MPICH2/install' '--enable-error-checking=runtime' '--enable-g=dbg' 'CFLAGS=-fPIC -g -O2' 'CXXFLAGS=-fPIC -g -O2' 'FFLAGS=-fpic -g' '--enable-threads=runtime' '--enable-totalview' '--enable-static' '--disable-f77' '--disable-fc' 'CC=gcc' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/MPICH2/build/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/openpa/src -I/tmp/MPICH2/build/src/openpa/src -I/tmp/MPICH2/build/src/mpi/romio/include' 'F77=gfortran' --cache-file=/dev/null --srcdir=../../../../../src/mpich2-1.5/src/mpe2/src/graphics
Configuring MPE X Graphics Library with '--disable-option-checking' '--prefix=/tmp/MPICH2/install' '--enable-error-checking=runtime' '--enable-g=dbg' 'CFLAGS=-fPIC -g -O2' 'CXXFLAGS=-fPIC -g -O2' 'FFLAGS=-fpic -g' '--enable-threads=runtime' '--enable-totalview' '--enable-static' '--disable-f77' '--disable-fc' 'CC=gcc' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/MPICH2/build/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/openpa/src -I/tmp/MPICH2/build/src/openpa/src -I/tmp/MPICH2/build/src/mpi/romio/include' 'F77=gfortran' '--cache-file=/dev/null' '--srcdir=../../../../../src/mpich2-1.5/src/mpe2/src/graphics'
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ar... ar
checking for ranlib... ranlib
checking whether gcc and cc understand -c and -o together... yes
checking how to run the C preprocessor... gcc -E
checking for X... libraries , headers
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking size of void *... 8
checking for long pointer... yes
checking for system... yes
checking for unistd.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating contrib/life/Makefile
config.status: creating contrib/mandel/Makefile
config.status: creating contrib/mastermind/Makefile
config.status: creating contrib/test/Makefile
config.status: creating etc/mpe_mpianim.conf
config.status: creating etc/mpe_graphics.conf
config.status: creating mpe_graphics_conf.h
=== configuring in src/collchk (/tmp/MPICH2/build/src/mpe2/src/collchk)
configure: running /bin/sh ../../../../../src/mpich2-1.5/src/mpe2/src/collchk/configure --disable-option-checking '--prefix=/tmp/MPICH2/install' '--enable-error-checking=runtime' '--enable-g=dbg' 'CFLAGS=-fPIC -g -O2' 'CXXFLAGS=-fPIC -g -O2' 'FFLAGS=-fpic -g' '--enable-threads=runtime' '--enable-totalview' '--enable-static' '--disable-f77' '--disable-fc' 'CC=gcc' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/MPICH2/build/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/openpa/src -I/tmp/MPICH2/build/src/openpa/src -I/tmp/MPICH2/build/src/mpi/romio/include' 'F77=gfortran' --cache-file=/dev/null --srcdir=../../../../../src/mpich2-1.5/src/mpe2/src/collchk
Configuring MPE Collective and Datatype Checking Library with '--disable-option-checking' '--prefix=/tmp/MPICH2/install' '--enable-error-checking=runtime' '--enable-g=dbg' 'CFLAGS=-fPIC -g -O2' 'CXXFLAGS=-fPIC -g -O2' 'FFLAGS=-fpic -g' '--enable-threads=runtime' '--enable-totalview' '--enable-static' '--disable-f77' '--disable-fc' 'CC=gcc' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/MPICH2/build/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/openpa/src -I/tmp/MPICH2/build/src/openpa/src -I/tmp/MPICH2/build/src/mpi/romio/include' 'F77=gfortran' '--cache-file=/dev/null' '--srcdir=../../../../../src/mpich2-1.5/src/mpe2/src/collchk'
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for ar... ar
checking for ranlib... ranlib
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for an ANSI C-conforming const... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking for size_t... yes
checking for working alloca.h... yes
checking for alloca... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating etc/mpe_mpicheck.conf
config.status: creating mpe_collchk_conf.h
=== configuring in src/slog2sdk (/tmp/MPICH2/build/src/mpe2/src/slog2sdk)
configure: running /bin/sh ../../../../../src/mpich2-1.5/src/mpe2/src/slog2sdk/configure --disable-option-checking '--prefix=/tmp/MPICH2/install' '--enable-error-checking=runtime' '--enable-g=dbg' 'CFLAGS=-fPIC -g -O2' 'CXXFLAGS=-fPIC -g -O2' 'FFLAGS=-fpic -g' '--enable-threads=runtime' '--enable-totalview' '--enable-static' '--disable-f77' '--disable-fc' 'CC=gcc' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/MPICH2/build/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/openpa/src -I/tmp/MPICH2/build/src/openpa/src -I/tmp/MPICH2/build/src/mpi/romio/include' 'F77=gfortran' --cache-file=/dev/null --srcdir=../../../../../src/mpich2-1.5/src/mpe2/src/slog2sdk
Configuring SLOG2SDK with '--disable-option-checking' '--prefix=/tmp/MPICH2/install' '--enable-error-checking=runtime' '--enable-g=dbg' 'CFLAGS=-fPIC -g -O2' 'CXXFLAGS=-fPIC -g -O2' 'FFLAGS=-fpic -g' '--enable-threads=runtime' '--enable-totalview' '--enable-static' '--disable-f77' '--disable-fc' 'CC=gcc' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/MPICH2/build/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/openpa/src -I/tmp/MPICH2/build/src/openpa/src -I/tmp/MPICH2/build/src/mpi/romio/include' 'F77=gfortran' '--cache-file=/dev/null' '--srcdir=../../../../../src/mpich2-1.5/src/mpe2/src/slog2sdk'
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking for a BSD-compatible install... /usr/bin/install -c
checking whether install works... yes
checking if CLASSPATH is set... no, good to go
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for java in user's PATH... found /usr/bin/java
checking if /usr/bin/java runs simple java class... yes
checking if /usr/bin/java runs simple jar file... yes
checking if /usr/bin/java runs non-GUI tool... yes
checking if /usr/bin/java runs simple Swing class... yes
checking if /usr/bin/java runs simple Swing jar file... yes
checking for Java version... java full version "1.6.0_24-b24", i.e. Java 2 SDK
checking for cygpath... no
configure: creating /tmp/MPICH2/build/src/mpe2/src/slog2sdk/lib from source
configure: creating /tmp/MPICH2/build/src/mpe2/src/slog2sdk/doc from source
configure: creating directory /tmp/MPICH2/build/src/mpe2/src/slog2sdk/share
configure: creating directory /tmp/MPICH2/build/src/mpe2/src/slog2sdk/share/examples/logfiles
configure: creating sample logfiles from source
checking for leftover Makefiles in subpackages ... none
configure: creating ./config.status
config.status: creating Makefile
config.status: creating sbin/install-package
config.status: creating bin/slog2print
config.status: creating bin/slog2navigator
config.status: creating bin/slog2filter
config.status: creating bin/slog2updater
config.status: creating bin/logconvertor
config.status: creating bin/jumpshot
config.status: creating bin/clogprint
config.status: creating bin/clogTOslog2
config.status: creating bin/clog2print
config.status: creating bin/clog2TOslog2
=== configuring in trace_rlog (/tmp/MPICH2/build/src/mpe2/src/slog2sdk/trace_rlog)
configure: running /bin/sh ../../../../../../src/mpich2-1.5/src/mpe2/src/slog2sdk/trace_rlog/configure --disable-option-checking '--prefix=/tmp/MPICH2/install' '--enable-error-checking=runtime' '--enable-g=dbg' 'CFLAGS=-fPIC -g -O2' 'CXXFLAGS=-fPIC -g -O2' 'FFLAGS=-fpic -g' '--enable-threads=runtime' '--enable-totalview' '--enable-static' '--disable-f77' '--disable-fc' 'CC=gcc' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/MPICH2/build/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/openpa/src -I/tmp/MPICH2/build/src/openpa/src -I/tmp/MPICH2/build/src/mpi/romio/include' 'F77=gfortran' --cache-file=/dev/null --srcdir=../../../../../../src/mpich2-1.5/src/mpe2/src/slog2sdk/trace_rlog
Configuring TRACE_RLOG implementation with '--disable-option-checking' '--prefix=/tmp/MPICH2/install' '--enable-error-checking=runtime' '--enable-g=dbg' 'CFLAGS=-fPIC -g -O2' 'CXXFLAGS=-fPIC -g -O2' 'FFLAGS=-fpic -g' '--enable-threads=runtime' '--enable-totalview' '--enable-static' '--disable-f77' '--disable-fc' 'CC=gcc' 'LDFLAGS= ' 'LIBS=-lrt -lpthread ' 'CPPFLAGS= -I/tmp/MPICH2/build/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/mpl/include -I/tmp/MPICH2/src/mpich2-1.5/src/openpa/src -I/tmp/MPICH2/build/src/openpa/src -I/tmp/MPICH2/build/src/mpi/romio/include' 'F77=gfortran' '--cache-file=/dev/null' '--srcdir=../../../../../../src/mpich2-1.5/src/mpe2/src/slog2sdk/trace_rlog'
checking gnumake... yes using --no-print-directory
checking BSD 4.4 make... no - whew
checking OSF V3 make... no
checking for virtual path format... VPATH
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdlib.h... (cached) yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for string.h... (cached) yes
checking ctype.h usability... yes
checking ctype.h presence... yes
checking for ctype.h... yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking for an ANSI C-conforming const... yes
checking size of void *... 8
checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking size of __int64... 0
checking whether byte ordering is bigendian... no
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for sed... sed
checking how to print strings... printf
checking for a sed that does not truncate output... sed
checking for fgrep... /bin/grep -F
checking for ld used by gcc... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1966080
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld -m elf_x86_64 option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... dlltool
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking for gawk... gawk
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for malloc in -lefence... no
checking for strstr... yes
checking target system type... x86_64-unknown-linux-gnu
checking for javah in user's PATH... found /usr/bin/javah
checking if /usr exists... yes
checking for <jni.h> include flag... no
checking for javah in user's PATH... found /usr/bin/javah
checking if /usr exists... yes
checking for <jni.h> include flag... no
checking for javah in user's PATH... found /usr/bin/javah
checking if /usr exists... yes
checking for <jni.h> include flag... no
checking for javah in user's PATH... found /usr/bin/javah
checking if /usr exists... yes
checking for <jni.h> include flag... no
checking for javah in known path... found /usr/lib/jvm/java-openjdk/bin/javah
checking if /usr/lib/jvm/java-openjdk exists... yes
checking for <jni.h> include flag... found -I/usr/lib/jvm/java-openjdk/include -I/usr/lib/jvm/java-openjdk/include/linux
checking for <jni.h> usability... yes
checking for cygpath... no
checking for a BSD-compatible install... /usr/bin/install -c
checking whether install works... yes
checking for ranlib... (cached) ranlib
checking whether install breaks libraries... no
configure: creating sample logfiles from source
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating sbin/install-package
config.status: creating bin/traceprint
config.status: creating bin/traceTOslog2
config.status: creating trace_impl.h
config.status: executing libtool commands
SLOG2SDK: "trace_rlog" have been configured
MPE2: "src/misc" "src/callstack" "src/logging" "src/wrappers" "src/graphics" "src/collchk" "src/slog2sdk" have been configured
configure: ===== done with src/mpe2 configure =====
checking size of OPA_ptr_t... 8
configure: WARNING: Could not define Fortran MPI datatypes for C
checking the sizeof MPI_Offset... 8
configure: creating ./config.lt
config.lt: creating libtool
checking that generated files are newer than configure... done
configure: creating ./config.status
Configuration completed.
More information about the discuss
mailing list