[mpich-discuss] problem installing mpich2-1.2.1p1 in cygwin

Thu Feb 21 09:14:01 CST 2013

Hi,
 Can you try the latest version of MPICH2 (http://www.mpich.org/?s=downloads)? 

Regards,
Jayesh

----- Original Message -----
From: "Angelo Paone" <angelo.paone1 at gmail.com>
To: discuss at mpich.org
Sent: Thursday, February 21, 2013 3:43:22 AM
Subject: [mpich-discuss] problem installing mpich2-1.2.1p1 in cygwin

I download the mpich2-1.2.1p1.tar.gz package, unzip and mkdir /home/bob/mpich2-1.2.1p1 

then I mkdir /home/bob/mpich2-1.2.1p1-install 

then I run ./configure --prefix=/home/bob/mpich2-1.2.1-install --exec-prefix=/usr/local/lib/pkgconfig --enable-fast=all, 03 

THE OUTPUT IS FOLLOWING: 

configure: WARNING: you should use --build, --host, --target 

Configuring MPICH2 version 1.2.1p1 with '--prefix=/home/bob/mpich2-1.2.1-install' '--exec-prefix=/usr/local/lib/pkgconfig' '--enable-fast=all,' '03' 'build_alias=03' 'host_alias=03' 'target_alias=03' 

Running on system: CYGWIN_NT-6.1 PC 1.7.17(0.262/5/3) 2012-10-19 14:39 i686 Cygwin 

Executing mpich2prereq in /home/bob/mpich2-1.2.1p1/src/mpid/ch3 with 

Executing mpich2prereq in /home/bob/mpich2-1.2.1p1/src/mpid/ch3/channels/nemesis 

sourcing /home/bob/mpich2-1.2.1p1/src/pm/mpd/mpich2prereq 

sourcing /home/bob/mpich2-1.2.1p1/src/pm/hydra/mpich2prereq 

sourcing /home/bob/mpich2-1.2.1p1/src/pm/gforker/mpich2prereq 

sourcing /home/bob/mpich2-1.2.1p1/src/pm/mpd/setup_pm 

checking for 03-gcc... no 

checking for gcc... gcc 

checking for C compiler default output file name... a.exe 

checking whether the C compiler works... yes 

checking whether we are cross compiling... no 

checking for suffix of executables... .exe 

checking for suffix of object files... o 

checking whether we are using the GNU C compiler... yes 

checking whether gcc accepts -g... yes 

checking for gcc option to accept ISO C89... none needed 

checking how to run the C preprocessor... gcc -E 

checking whether the compiler defines __func__... yes 

checking whether the compiler defines __FUNC__... no 

checking whether the compiler sets __FUNCTION__... yes 

checking whether C compiler accepts option -O2... yes 

checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes 

checking for type of weak symbol alias support... pragma weak does not work outside of a file 

no 

checking whether __attribute__ ((weak)) allowed... yes 

checking whether __attribute ((weak_import)) allowed... yes 

checking for 03-g77... no 

checking for 03-xlf... no 

checking for 03-f77... no 

checking for 03-frt... no 

checking for 03-pgf77... no 

checking for 03-cf77... no 

checking for 03-fort77... no 

checking for 03-fl32... no 

checking for 03-af77... no 

checking for 03-xlf90... no 

checking for 03-f90... no 

checking for 03-pgf90... no 

checking for 03-pghpf... no 

checking for 03-epcf90... no 

checking for 03-gfortran... no 

checking for 03-g95... no 

checking for 03-xlf95... no 

checking for 03-f95... no 

checking for 03-fort... no 

checking for 03-ifort... no 

checking for 03-ifc... no 

checking for 03-efc... no 

checking for 03-pgf95... no 

checking for 03-lf95... no 

checking for 03-ftn... no 

checking for g77... g77 

checking whether we are using the GNU Fortran 77 compiler... yes 

checking whether g77 accepts -g... yes 

checking whether Fortran 77 compiler accepts option -O2... yes 

checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes 

checking how to get verbose linking output from g77... -v 

checking for Fortran 77 libraries of g77... -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lfrtbegin -lg2c -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32 

checking whether g77 accepts the FLIBS found by autoconf... yes 

checking whether C can link with -L/usr/lib/gcc/i686-pc-cygwin/3.4.4 -L/usr/lib/gcc/i686-pc-cygwin/3.4.4/../../.. -lfrtbegin -lg2c -lcygwin -luser32 -lkernel32 -ladvapi32 -lshell32... yes 

checking for linker for Fortran main programs... Use Fortran to link programs 

checking whether Fortran 77 and C objects are compatible... yes 

checking for Fortran 77 name mangling... lower doubleunderscore 

checking what libraries are needed to link Fortran programs with C routines that use stdio... none 

checking whether Fortran init will work with C... yes 

checking for 03-f90... no 

checking for 03-xlf90... no 

checking for 03-pgf90... no 

checking for 03-ifort... no 

checking for 03-epcf90... no 

checking for 03-f95... no 

checking for 03-fort... no 

checking for 03-xlf95... no 

checking for 03-lf95... no 

checking for 03-pathf95... no 

checking for 03-pathf90... no 

checking for 03-g95... no 

checking for 03-gfortran... no 

checking for 03-ifc... no 

checking for 03-efc... no 

checking for f90... no 

checking for xlf90... no 

checking for pgf90... no 

checking for ifort... no 

checking for epcf90... no 

checking for f95... no 

checking for fort... no 

checking for xlf95... no 

checking for lf95... no 

checking for pathf95... no 

checking for pathf90... no 

checking for g95... no 

checking for gfortran... gfortran 

checking that f works as the extension for Fortran 90 program... yes 

checking whether we are using the GNU Fortran 90 compiler... yes 

checking whether gfortran accepts -g... yes 

checking for extension for Fortran 90 programs... f90 

checking whether the Fortran 90 compiler (gfortran -DNDEBUG ) works... yes 

checking whether the Fortran 90 compiler (gfortran -DNDEBUG ) is a cross-compiler... no 

checking whether Fortran 90 works with Fortran 77... cat: conftest.f90: No such file or directory 

Output from the link step is 

/tmp/ccYCQbvY.o:conftest1.f90:(.text+0x14): undefined reference to `_t1_2_' 

collect2: ld returned 1 exit status 

no 

configure: WARNING: The test program that was used and the output may be found in config.log 

configure: WARNING: The selected Fortran 90 compiler gfortran does not work with the selected Fortran 77 compiler g77. Use the environment variables F90 and F77 respectively to select compatible Fortran compilers. The check here tests to see if a main program compiled with the Fortran 90 compiler can link with a subroutine compiled with the Fortran 77 compiler. 

checking whether Fortran accepts ! for comments... yes 

checking for include directory flag for Fortran... -I 

checking for Fortran 77 flag for library directories... -L 

checking for which Fortran libraries are needed to link C with Fortran... none 

checking whether Fortran compiler processes .F files with C preprocessor... yes 

checking for c++... c++ 

checking whether we are using the GNU C++ compiler... yes 

checking whether c++ accepts -g... yes 

checking whether the C++ compiler c++ can build an executable... yes 

checking whether C++ compiler works with string... yes 

checking whether the compiler supports exceptions... yes 

checking whether the compiler recognizes bool as a built-in type... yes 

checking whether the compiler implements namespaces... yes 

checking whether <iostream> available... yes 

checking whether the compiler implements the namespace std... yes 

checking whether <math> available... no 

checking for GNU g++ version... 4 . 5 

checking whether C++ compiler accepts option -O2... yes 

checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes 

checking for perl... /usr/bin/perl 

checking for ar... ar 

checking for ranlib... ranlib 

checking for killall... killall 

checking for a BSD-compatible install... /usr/bin/install -c 

checking whether install works... yes 

checking for 03-ranlib... (cached) ranlib 

checking whether install breaks libraries... no 

checking whether mkdir -p works... yes 

checking for make... make 

checking whether clock skew breaks make... no 

checking whether make supports include... yes 

checking whether make allows comments in actions... yes 

checking for virtual path format... VPATH 

checking whether make sets CFLAGS... no 

checking for bash... /usr/bin/bash 

checking whether /usr/bin/bash supports arrays... yes 

checking for doctext... false 

checking for location of doctext style files... unavailable 

checking for an ANSI C-conforming const... yes 

checking for working volatile... yes 

checking for C/C++ restrict keyword... __restrict 

checking for inline... inline 

checking whether __attribute__ allowed... yes 

checking whether __attribute__((format)) allowed... yes 

checking whether byte ordering is bigendian... no 

checking whether C compiler allows unaligned doubles... yes 

checking whether gcc supports __func__... yes 

Using gcc to determine dependencies 

checking whether long double is supported... yes 

checking whether long long is supported... yes 

checking for max C struct integer alignment... eight 

checking for max C struct floating point alignment... four 

checking for max C struct alignment of structs with doubles... eight 

checking for max C struct floating point alignment with long doubles... four 

configure: WARNING: Structures containing long doubles may be aligned differently from structures with floats or longs. MPICH2 does not handle this case automatically and you should avoid assumed extents for structures containing float types. 

checking if alignment of structs with doubles is based on position... no 

checking if alignment of structs with long long ints is based on position... no 

checking if double alignment breaks rules, find actual alignment... no 

checking for alignment restrictions on pointers... int or better 

checking size of char... 1 

checking size of unsigned char... 1 

checking size of short... 2 

checking size of unsigned short... 2 

checking size of int... 4 

checking size of unsigned int... 4 

checking size of long... 4 

checking size of unsigned long... 4 

checking size of long long... 8 

checking size of unsigned long long... 8 

checking size of float... 4 

checking size of double... 8 

checking size of long double... 12 

checking size of void *... 4 

checking for ANSI C header files... no 

checking stddef.h usability... yes 

checking stddef.h presence... yes 

checking for stddef.h... yes 

checking size of wchar_t... 2 

checking size of float_int... 8 

checking size of double_int... 16 

checking size of long_int... 8 

checking size of short_int... 8 

checking size of two_int... 8 

checking size of long_double_int... 16 

checking sys/bitypes.h usability... no 

checking sys/bitypes.h presence... no 

checking for sys/bitypes.h... no 

checking inttypes.h usability... yes 

checking inttypes.h presence... yes 

checking for inttypes.h... yes 

checking stdint.h usability... yes 

checking stdint.h presence... yes 

checking for stdint.h... yes 

checking for int8_t... yes 

checking for int16_t... yes 

checking for int32_t... yes 

checking for int64_t... yes 

checking for uint8_t... yes 

checking for uint16_t... yes 

checking for uint32_t... yes 

checking for uint64_t... yes 

checking size of _Bool... 1 

checking size of float _Complex... 8 

checking size of double _Complex... 16 

checking size of long double _Complex... 24 

checking for _Bool... yes 

checking for float _Complex... yes 

checking for double _Complex... yes 

checking for long double _Complex... yes 

checking for size of Fortran type integer... 4 

checking for size of Fortran type real... 4 

checking for size of Fortran type double precision... 8 

checking whether integer*1 is supported... yes 

checking whether integer*2 is supported... yes 

checking whether integer*4 is supported... yes 

checking whether integer*8 is supported... yes 

checking whether integer*16 is supported... no 

checking whether real*4 is supported... yes 

checking whether real*8 is supported... yes 

checking whether real*16 is supported... no 

checking for C type matching Fortran integer... int 

checking for size of MPI_Status... 20 

checking for values of Fortran logicals... True is 1 and False is 0 

checking for Fortran 90 integer kind for 4-byte integers... 4 

checking for Fortran 90 integer kind for 8-byte integers... 8 

checking whether real*8 is supported in Fortran 90... yes 

checking size of bool... 1 

checking how to run the C++ preprocessor... c++ -E 

checking complex usability... yes 

checking complex presence... yes 

checking for complex... yes 

checking size of Complex... 8 

checking size of DoubleComplex... 16 

checking size of LongDoubleComplex... 24 

checking if char * pointers use byte addresses... yes 

checking for alignment restrictions on ... no 

checking for alignment restrictions on int32_t... no 

checking size of MPIR_Bsend_data_t... 56 

checking for gcc __asm__ and pentium cmpxchgl instruction... yes 

checking for gcc __asm__ and AMD x86_64 cmpxchgq instruction... no 

checking for gcc __asm__ and IA64 xchg4 instruction... no 

checking for ANSI C header files... (cached) no 

checking stdlib.h usability... yes 

checking stdlib.h presence... yes 

checking for stdlib.h... yes 

checking stdarg.h usability... yes 

checking stdarg.h presence... yes 

checking for stdarg.h... yes 

checking sys/types.h usability... yes 

checking sys/types.h presence... yes 

checking for sys/types.h... yes 

checking string.h usability... yes 

checking string.h presence... yes 

checking for string.h... yes 

checking for inttypes.h... (cached) yes 

checking limits.h usability... yes 

checking limits.h presence... yes 

checking for limits.h... yes 

checking for stddef.h... (cached) yes 

checking errno.h usability... yes 

checking errno.h presence... yes 

checking for errno.h... yes 

checking sys/socket.h usability... yes 

checking sys/socket.h presence... yes 

checking for sys/socket.h... yes 

checking sys/time.h usability... yes 

checking sys/time.h presence... yes 

checking for sys/time.h... yes 

checking unistd.h usability... yes 

checking unistd.h presence... yes 

checking for unistd.h... yes 

checking endian.h usability... yes 

checking endian.h presence... yes 

checking for endian.h... yes 

checking assert.h usability... yes 

checking assert.h presence... yes 

checking for assert.h... yes 

checking sys/param.h usability... yes 

checking sys/param.h presence... yes 

checking for sys/param.h... yes 

checking for sys/uio.h... yes 

checking for size_t... yes 

checking for setitimer... yes 

checking for alarm... yes 

checking for vsnprintf... yes 

checking for vsprintf... yes 

checking whether vsnprintf needs a declaration... no 

checking for strerror... yes 

checking for strncasecmp... yes 

checking for snprintf... yes 

checking whether snprintf needs a declaration... no 

checking for va_copy... yes 

checking for variable argument list macro functionality... yes 

checking valgrind.h usability... no 

checking valgrind.h presence... no 

checking for valgrind.h... no 

checking memcheck.h usability... no 

checking memcheck.h presence... no 

checking for memcheck.h... no 

checking valgrind/valgrind.h usability... no 

checking valgrind/valgrind.h presence... no 

checking for valgrind/valgrind.h... no 

checking valgrind/memcheck.h usability... no 

checking valgrind/memcheck.h presence... no 

checking for valgrind/memcheck.h... no 

checking for working alloca.h... yes 

checking for alloca... yes 

checking for strdup... yes 

checking whether strdup needs a declaration... no 

checking for mkstemp... yes 

checking whether mkstemp needs a declaration... no 

checking for fdopen... yes 

checking whether fdopen needs a declaration... yes 

checking for putenv... yes 

checking whether putenv needs a declaration... no 

checking for clock_gettime... yes 

checking for clock_getres... yes 

checking for gethrtime... no 

checking for gettimeofday... yes 

checking for clock_gettime in -lrt... yes 

checking for clock_getres... (cached) yes 

checking whether struct timespec is defined in time.h... yes 

checking for CLOCK_REALTIME defined in time.h... yes 

sourcing /home/bob/mpich2-1.2.1p1/src/mpid/ch3/setup_device 

RUNNING SETUP_DEVICE FOR THE CH3 DEVICE 

sourcing /home/bob/mpich2-1.2.1p1/src/mpid/ch3/channels/nemesis/setup_channel 

RUNNING SETUP_CHANNEL FOR THE NEMESIS CHANNEL 

sourcing /home/bob/mpich2-1.2.1p1/src/mpid/common/locks/setup 

RUNNING SETUP FOR THE PROCESS LOCKS MODULE 

SPARC V9 inline spin locks supported...no 

SPARC V8 inline spin locks supported...no 

checking pthread.h usability... yes 

checking pthread.h presence... yes 

checking for pthread.h... yes 

checking for fgrep... /usr/bin/fgrep 

checking for pthread_key_create in -lpthread... yes 

checking for pthread_yield... yes 

checking for pthread_key_create... yes 

checking for pthread_cleanup_push... no 

checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no 

checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE_NP... no 

checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE... yes 

checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK_NP... no 

checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK... yes 

checking for sched_yield... yes 

checking for yield... no 

checking for usleep... yes 

checking for sleep... yes 

checking for select... yes 

checking for getpid... yes 

checking for sched_setaffinity... no 

checking for sched_getaffinity... no 

checking for bindprocessor... no 

checking for thread_policy_set... no 

configure: configuring subsystem in src/openpa 

configure: WARNING: you should use --build, --host, --target 

configure: WARNING: unrecognized options: --enable-fast, --disable-checkerrors 

checking for a BSD-compatible install... /usr/bin/install -c 

checking whether build environment is sane... yes 

checking for a thread-safe mkdir -p... mkdir -p 

checking for gawk... gawk 

checking whether make sets $(MAKE)... yes 

checking for 03-gcc... gcc 

checking for C compiler default output file name... a.exe 

checking whether the C compiler works... yes 

checking whether we are cross compiling... no 

checking for suffix of executables... .exe 

checking for suffix of object files... o 

checking whether we are using the GNU C compiler... yes 

checking whether gcc accepts -g... yes 

checking for gcc option to accept ISO C89... none needed 

checking for style of include used by make... GNU 

checking dependency style of gcc... gcc3 

checking for 03-ranlib... ranlib 

checking whether to enable assertions... yes 

checking how to run the C preprocessor... gcc -E 

checking for grep that handles long lines and -e... /usr/bin/grep 

checking for egrep... /usr/bin/grep -E 

checking for ANSI C header files... yes 

checking for sys/types.h... yes 

checking for sys/stat.h... yes 

checking for stdlib.h... yes 

checking for string.h... yes 

checking for memory.h... yes 

checking for strings.h... yes 

checking for inttypes.h... yes 

checking for stdint.h... yes 

checking for unistd.h... yes 

checking pthread.h usability... yes 

checking pthread.h presence... yes 

checking for pthread.h... yes 

checking atomic.h usability... no 

checking atomic.h presence... no 

checking for atomic.h... no 

checking intrin.h usability... no 

checking intrin.h presence... no 

checking for intrin.h... no 

checking for inttypes.h... (cached) yes 

checking for stdint.h... (cached) yes 

checking for C/C++ restrict keyword... __restrict 

checking for inline... inline 

checking for an ANSI C-conforming const... yes 

checking for pthread_create in -lpthread... yes 

checking for pthread_yield... yes 

checking if 100 threads can be run at once... yes 

checking size of void *... 4 

checking size of int... 4 

checking whether __attribute__ allowed... yes 

checking whether __attribute__((format)) allowed... yes 

checking if compiler rejects bogus asm statements... yes 

checking for support for gcc x86/x86_64 bit primitives... yes 

checking for support for gcc x86 bit primitives for pre-Pentium 4... yes 

checking for support for gcc ia64 primitives... no 

checking for support for gcc PowerPC atomics... no 

checking for support for gcc SiCortex atomics... no 

checking for support for gcc atomic intrinsics... yes 

checking for support for Windows NT atomic intrinsics... no 

checking for support for Sun atomic operations library... no 

checking whether to enable strict fairness checks... no 

configure: creating ./config.status 

config.status: creating Makefile 

config.status: creating src/Makefile 

config.status: creating test/Makefile 

config.status: creating openpa.pc 

config.status: creating src/config.h 

config.status: src/config.h is unchanged 

config.status: executing src/opa_config.h commands 

config.status: creating src/opa_config.h - prefix OPA for src/config.h defines 

config.status: src/opa_config.h is unchanged 

config.status: executing depfiles commands 

configure: WARNING: unrecognized options: --enable-fast, --disable-checkerrors 

configure: configuring subsystem in src/mpid/ch3 

configure: WARNING: you should use --build, --host, --target 

RUNNING CONFIGURE FOR CH3 DEVICE 

checking for make... make 

checking whether clock skew breaks make... no 

checking whether make supports include... yes 

checking whether make allows comments in actions... yes 

checking for virtual path format... VPATH 

checking whether make sets CFLAGS... yes 

checking for 03-gcc... gcc 

checking for C compiler default output file name... a.exe 

checking whether the C compiler works... yes 

checking whether we are cross compiling... no 

checking for suffix of executables... .exe 

checking for suffix of object files... o 

checking whether we are using the GNU C compiler... yes 

checking whether gcc accepts -g... yes 

checking for gcc option to accept ISO C89... none needed 

checking how to run the C preprocessor... gcc -E 

checking for grep that handles long lines and -e... /usr/bin/grep 

checking for egrep... /usr/bin/grep -E 

checking for ANSI C header files... yes 

checking for sys/types.h... yes 

checking for sys/stat.h... yes 

checking for stdlib.h... yes 

checking for string.h... yes 

checking for memory.h... yes 

checking for strings.h... yes 

checking for inttypes.h... yes 

checking for stdint.h... yes 

checking for unistd.h... yes 

16 

checking assert.h usability... yes 

checking assert.h presence... yes 

checking for assert.h... yes 

checking limits.h usability... yes 

checking limits.h presence... yes 

checking for limits.h... yes 

checking for string.h... (cached) yes 

checking for sys/types.h... (cached) yes 

checking sys/uio.h usability... yes 

checking sys/uio.h presence... yes 

checking for sys/uio.h... yes 

checking uuid/uuid.h usability... yes 

checking uuid/uuid.h presence... yes 

checking for uuid/uuid.h... yes 

checking time.h usability... yes 

checking time.h presence... yes 

checking for time.h... yes 

checking ctype.h usability... yes 

checking ctype.h presence... yes 

checking for ctype.h... yes 

checking for unistd.h... (cached) yes 

checking arpa/inet.h usability... yes 

checking arpa/inet.h presence... yes 

checking for arpa/inet.h... yes 

checking sys/socket.h usability... yes 

checking sys/socket.h presence... yes 

checking for sys/socket.h... yes 

checking for net/if.h... yes 

checking for pid_t... yes 

checking for inet_pton... yes 

checking for gethostname... yes 

checking whether gethostname needs a declaration... no 

checking for CFUUIDCreate... no 

checking for uuid_generate... no 

checking for time... yes 

checking whether CPP accepts variable length argument lists... yes 

checking whether byte ordering is bigendian... no 

checking whether we can use struct ifconf... yes 

checking size of int... 4 

checking size of long... 4 

checking size of long long... 8 

checking size of void *... 4 

configure: creating ./config.status 

config.status: creating Makefile 

config.status: creating src/Makefile 

config.status: creating util/Makefile 

config.status: creating util/shm/Makefile 

config.status: creating util/shmbase/Makefile 

config.status: creating channels/Makefile 

config.status: creating util/ftb/Makefile 

config.status: creating localdefs 

config.status: creating include/mpid_thread.h 

config.status: creating include/mpidi_ch3_conf.h 

config.status: include/mpidi_ch3_conf.h is unchanged 

config.status: executing default-1 commands 

copying ./../common/thread/mpid_thread_mpe.c to src/mpid_thread.c 

=== configuring in channels/nemesis (/home/bob/mpich2-1.2.1p1/src/mpid/ch3/channels/nemesis) 

configure: running /bin/sh ./configure --disable-option-checking '--prefix=/home/bob/mpich2-1.2.1-install' '--exec-prefix=/usr/local/lib/pkgconfig' '--enable-fast=all,' '03' 'build_alias=03' 'host_alias=03' 'target_alias=03' '--disable-checkerrors' '--with-atomic-primitives=auto_allow_emulation' 'CC=gcc' 'CFLAGS= -DNDEBUG -O2' 'LDFLAGS= -lrt' 'LIBS= -lpthread' 'CPPFLAGS= -I/home/bob/mpich2-1.2.1p1/src/openpa/src -I/home/bob/mpich2-1.2.1p1/src/openpa/src -DUSE_PROCESS_LOCKS' --cache-file=/dev/null --srcdir=. 

configure: WARNING: you should use --build, --host, --target 

RUNNING CONFIGURE FOR THE NEMESIS CHANNEL 

checking for make... make 

checking whether clock skew breaks make... no 

checking whether make supports include... yes 

checking whether make allows comments in actions... yes 

checking for virtual path format... VPATH 

checking whether make sets CFLAGS... yes 

checking for 03-gcc... gcc 

checking for C compiler default output file name... a.exe 

checking whether the C compiler works... yes 

checking whether we are cross compiling... no 

checking for suffix of executables... .exe 

checking for suffix of object files... o 

checking whether we are using the GNU C compiler... yes 

checking whether gcc accepts -g... yes 

checking for gcc option to accept ISO C89... none needed 

checking for inline... inline 

checking how to run the C preprocessor... gcc -E 

checking for grep that handles long lines and -e... /usr/bin/grep 

checking for egrep... /usr/bin/grep -E 

checking for ANSI C header files... yes 

checking for sys/types.h... yes 

checking for sys/stat.h... yes 

checking for stdlib.h... yes 

checking for string.h... yes 

checking for memory.h... yes 

checking for strings.h... yes 

checking for inttypes.h... yes 

checking for stdint.h... yes 

checking for unistd.h... yes 

checking for pid_t... yes 

checking for net/if.h... yes 

checking assert.h usability... yes 

checking assert.h presence... yes 

checking for assert.h... yes 

checking netdb.h usability... yes 

checking netdb.h presence... yes 

checking for netdb.h... yes 

checking for unistd.h... (cached) yes 

checking sched.h usability... yes 

checking sched.h presence... yes 

checking for sched.h... yes 

checking sys/mman.h usability... yes 

checking sys/mman.h presence... yes 

checking for sys/mman.h... yes 

checking sys/ioctl.h usability... yes 

checking sys/ioctl.h presence... yes 

checking for sys/ioctl.h... yes 

checking sys/socket.h usability... yes 

checking sys/socket.h presence... yes 

checking for sys/socket.h... yes 

checking sys/sockio.h usability... no 

checking sys/sockio.h presence... no 

checking for sys/sockio.h... no 

checking for sys/types.h... (cached) yes 

checking errno.h usability... yes 

checking errno.h presence... yes 

checking for errno.h... yes 

checking sys/ipc.h usability... yes 

checking sys/ipc.h presence... yes 

checking for sys/ipc.h... yes 

checking sys/shm.h usability... yes 

checking sys/shm.h presence... yes 

checking for sys/shm.h... yes 

checking for netinet/in.h... yes 

checking for mkstemp... yes 

checking for rand... yes 

checking for srand... yes 

checking for OpenPA atomic primitive availability... yes 

checking for mmap... yes 

checking for munmap... yes 

configure: Using a memory-mapped file for shared memory 

checking whether struct hostent contains h_addr_list... yes 

checking whether we can use struct ifconf... yes 

checking knem_io.h usability... no 

checking knem_io.h presence... no 

checking for knem_io.h... no 

configure: creating ./config.status 

config.status: creating Makefile 

config.status: creating src/Makefile 

config.status: creating nemesis/Makefile 

config.status: creating nemesis/src/Makefile 

config.status: creating nemesis/utils/Makefile 

config.status: creating nemesis/utils/replacements/Makefile 

config.status: creating nemesis/utils/monitor/Makefile 

config.status: creating nemesis/netmod/Makefile 

config.status: creating nemesis/netmod/elan/Makefile 

config.status: creating nemesis/netmod/gm/Makefile 

config.status: creating nemesis/netmod/mx/Makefile 

config.status: creating nemesis/netmod/tcp/Makefile 

config.status: creating nemesis/netmod/ib/Makefile 

config.status: creating nemesis/netmod/psm/Makefile 

config.status: creating nemesis/netmod/newmad/Makefile 

config.status: creating nemesis/netmod/none/Makefile 

config.status: creating localdefs 

config.status: creating nemesis/include/mpid_nem_net_module_defs.h 

config.status: creating nemesis/src/mpid_nem_net_array.c 

config.status: creating include/mpidi_ch3i_nemesis_conf.h 

config.status: include/mpidi_ch3i_nemesis_conf.h is unchanged 

configure: configuring subsystem in src/mpid/common/locks 

configure: WARNING: you should use --build, --host, --target 

configure: WARNING: unrecognized options: --enable-fast, --disable-checkerrors, --with-atomic-primitives 

RUNNING CONFIGURE FOR LOCKS 

checking for make... make 

checking whether clock skew breaks make... no 

checking whether make supports include... yes 

checking whether make allows comments in actions... yes 

checking for virtual path format... VPATH 

checking whether make sets CFLAGS... yes 

checking for ar... ar 

checking for ranlib... ranlib 

checking for 03-gcc... gcc 

checking for C compiler default output file name... a.exe 

checking whether the C compiler works... yes 

checking whether we are cross compiling... no 

checking for suffix of executables... .exe 

checking for suffix of object files... o 

checking whether we are using the GNU C compiler... yes 

checking whether gcc accepts -g... yes 

checking for gcc option to accept ISO C89... none needed 

checking for yield... no 

checking for sched_yield... yes 

checking for usleep... yes 

checking for sleep... yes 

checking for select... yes 

checking for mutex_init... no 

checking for compare_and_swap... no 

checking for pthread_mutexattr_init... yes 

checking for pthread_mutexattr_setpshared... yes 

checking how to run the C preprocessor... gcc -E 

checking for grep that handles long lines and -e... /usr/bin/grep 

checking for egrep... /usr/bin/grep -E 

checking for ANSI C header files... yes 

checking for sys/types.h... yes 

checking for sys/stat.h... yes 

checking for stdlib.h... yes 

checking for string.h... yes 

checking for memory.h... yes 

checking for strings.h... yes 

checking for inttypes.h... yes 

checking for stdint.h... yes 

checking for unistd.h... yes 

checking pthread.h usability... yes 

checking pthread.h presence... yes 

checking for pthread.h... yes 

checking sched.h usability... yes 

checking sched.h presence... yes 

checking for sched.h... yes 

checking for inline... inline 

checking for working volatile... yes 

checking for an ANSI C-conforming const... yes 

configure: creating ./config.status 

config.status: creating Makefile 

config.status: creating mpid_locksconf.h 

config.status: mpid_locksconf.h is unchanged 

configure: WARNING: unrecognized options: --enable-fast, --disable-checkerrors, --with-atomic-primitives 

configure: configuring subsystem in src/mpid/common/locks 

configure: WARNING: you should use --build, --host, --target 

configure: WARNING: unrecognized options: --enable-fast, --disable-checkerrors, --with-atomic-primitives 

RUNNING CONFIGURE FOR LOCKS 

checking for make... make 

checking whether clock skew breaks make... no 

checking whether make supports include... yes 

checking whether make allows comments in actions... yes 

checking for virtual path format... VPATH 

checking whether make sets CFLAGS... yes 

checking for ar... ar 

checking for ranlib... ranlib 

checking for 03-gcc... gcc 

checking for C compiler default output file name... a.exe 

checking whether the C compiler works... yes 

checking whether we are cross compiling... no 

checking for suffix of executables... .exe 

checking for suffix of object files... o 

checking whether we are using the GNU C compiler... yes 

checking whether gcc accepts -g... yes 

checking for gcc option to accept ISO C89... none needed 

checking for yield... no 

checking for sched_yield... yes 

checking for usleep... yes 

checking for sleep... yes 

checking for select... yes 

checking for mutex_init... no 

checking for compare_and_swap... no 

checking for pthread_mutexattr_init... yes 

checking for pthread_mutexattr_setpshared... yes 

checking how to run the C preprocessor... gcc -E 

checking for grep that handles long lines and -e... /usr/bin/grep 

checking for egrep... /usr/bin/grep -E 

checking for ANSI C header files... yes 

checking for sys/types.h... yes 

checking for sys/stat.h... yes 

checking for stdlib.h... yes 

checking for string.h... yes 

checking for memory.h... yes 

checking for strings.h... yes 

checking for inttypes.h... yes 

checking for stdint.h... yes 

checking for unistd.h... yes 

checking pthread.h usability... yes 

checking pthread.h presence... yes 

checking for pthread.h... yes 

checking sched.h usability... yes 

checking sched.h presence... yes 

checking for sched.h... yes 

checking for inline... inline 

checking for working volatile... yes 

checking for an ANSI C-conforming const... yes 

configure: creating ./config.status 

config.status: creating Makefile 

config.status: creating mpid_locksconf.h 

config.status: mpid_locksconf.h is unchanged 

configure: WARNING: unrecognized options: --enable-fast, --disable-checkerrors, --with-atomic-primitives 

configure: configuring subsystem in src/mpi/romio 

configure: WARNING: you should use --build, --host, --target 

configure: WARNING: unrecognized options: --enable-fast, --disable-checkerrors, --with-atomic-primitives 

Configuring with args --prefix=/home/bob/mpich2-1.2.1-install --exec-prefix=/usr/local/lib/pkgconfig --enable-fast=all, 03 build_alias=03 host_alias=03 target_alias=03 --disable-checkerrors --with-atomic-primitives=auto_allow_emulation 

checking for architecture... i686 

configure: WARNING: Unknown architecture ... proceeding anyway 

ROMIO home directory is /home/bob/mpich2-1.2.1p1/src/mpi/romio 

checking for 03-gcc... gcc 

checking for C compiler default output file name... a.exe 

checking whether the C compiler works... yes 

checking whether we are cross compiling... no 

checking for suffix of executables... .exe 

checking for suffix of object files... o 

checking whether we are using the GNU C compiler... yes 

checking whether gcc accepts -g... yes 

checking for gcc option to accept ISO C89... none needed 

checking for 03-g77... g77 

checking whether we are using the GNU Fortran 77 compiler... yes 

checking whether g77 accepts -g... yes 

checking for memalign... yes 

checking Fortran external names 

Fortran externals are lower case and have two trailing underscores 

checking for inline... inline 

checking how to run the C preprocessor... gcc -E 

checking for grep that handles long lines and -e... /usr/bin/grep 

checking for egrep... /usr/bin/grep -E 

checking for ANSI C header files... yes 

checking for sys/types.h... yes 

checking for sys/stat.h... yes 

checking for stdlib.h... yes 

checking for string.h... yes 

checking for memory.h... yes 

checking for strings.h... yes 

checking for inttypes.h... yes 

checking for stdint.h... yes 

checking for unistd.h... yes 

checking for unistd.h... (cached) yes 

checking fcntl.h usability... yes 

checking fcntl.h presence... yes 

checking for fcntl.h... yes 

checking malloc.h usability... yes 

checking malloc.h presence... yes 

checking for malloc.h... yes 

checking stddef.h usability... yes 

checking stddef.h presence... yes 

checking for stddef.h... yes 

checking for sys/types.h... (cached) yes 

checking for u_char... yes 

checking for u_short... yes 

checking for u_int... yes 

checking for u_long... yes 

checking sys/attr.h usability... no 

checking sys/attr.h presence... no 

checking for sys/attr.h... no 

checking size of int... 4 

checking size of void *... 4 

checking for int large enough for pointers... yes 

checking size of long long... 8 

checking for extension for Fortran 90 programs... f90 

checking for Fortran 90 KIND parameter for 8-byte integers... 8 

checking that we can use integer*8 to declare MPI_DISPLACMENT_CURRENT... yes 

Overriding Array test for MPICH2 

checking for weak symbol support... pragma weak 

checking that weak symbols are visible to other files... no 

no 

checking whether struct flock compatible with MPI_Offset... yes 

checking for pvfs2-config... notfound 

checking configured file systems... testfs ufs nfs 

configure: WARNING: File locks may not work with NFS. See the Installation and 

users manual for instructions on testing and if necessary fixing this 

checking for library containing aio_write... no 

checking for library containing pthread_create... none required 

checking for library containing aio_write... (cached) no 

checking whether aio routines can be used... no 

checking for obsolete two-argument aio_write... no 

checking for obsolete two-argument aio_suspend... no 

checking for aio_fildes member of aiocb structure... no 

checking for aio_whence member of aiocb structure... no 

checking for aio_handle member of aiocb structure... no 

checking for aio_reqprio member of aiocb structure... no 

checking for aio_sigevent member of aiocb structure... no 

checking sys/vfs.h usability... yes 

checking sys/vfs.h presence... yes 

checking for sys/vfs.h... yes 

checking sys/param.h usability... yes 

checking sys/param.h presence... yes 

checking for sys/param.h... yes 

checking sys/mount.h usability... yes 

checking sys/mount.h presence... yes 

checking for sys/mount.h... yes 

checking sys/statvfs.h usability... yes 

checking sys/statvfs.h presence... yes 

checking for sys/statvfs.h... yes 

checking whether struct statfs properly defined... yes 

checking for f_fstypename member of statfs structure... no 

checking for sys/stat.h... (cached) yes 

checking for sys/types.h... (cached) yes 

checking for unistd.h... (cached) yes 

checking for stat... yes 

checking for st_fstype member of stat structure... no 

checking for sys/types.h... (cached) yes 

checking for sys/statvfs.h... (cached) yes 

checking for sys/vfs.h... (cached) yes 

checking for statvfs... yes 

checking for f_basetype member of statvfs structure... no 

checking for unistd.h... (cached) yes 

checking for large file defines... no 

checking for strerror... yes 

checking for doctext... false 

checking for strdup... yes 

checking whether strdup needs a declaration... no 

checking for snprintf... yes 

checking whether snprintf needs a declaration... no 

checking for lstat... yes 

checking whether lstat needs a declaration... yes 

checking for readlink... yes 

checking whether readlink needs a declaration... no 

checking for fsync... yes 

checking whether fsync needs a declaration... no 

checking for ftruncate... yes 

checking whether ftruncate needs a declaration... no 

checking for lseek64... no 

checking for unistd.h... (cached) yes 

checking for large file defines... none 

setting SYSDEP_INC to 

checking for C/C++ restrict keyword... __restrict 

checking whether __attribute__ allowed... yes 

checking whether __attribute__((format)) allowed... yes 

setting CC to gcc 

setting F77 to g77 

setting TEST_CC to /home/bob/mpich2-1.2.1p1/bin/mpicc 

setting TEST_F77 to /home/bob/mpich2-1.2.1p1/bin/mpif77 

setting CFLAGS to -DNDEBUG -O2 -DFORTRANDOUBLEUNDERSCORE -DHAVE_ROMIOCONF_H 

setting USER_CFLAGS to 

setting USER_FFLAGS to 

configure: creating ./config.status 

config.status: creating Makefile 

config.status: creating localdefs 

config.status: creating mpi-io/Makefile 

config.status: creating mpi2-other/info/Makefile 

config.status: creating mpi2-other/array/Makefile 

config.status: creating adio/common/Makefile 

config.status: creating test/Makefile 

config.status: creating test/misc.c 

config.status: creating test/large_file.c 

config.status: creating test/runtests 

config.status: creating test-internal/Makefile 

config.status: creating util/romioinstall 

config.status: creating include/mpio.h 

config.status: creating include/mpiof.h 

config.status: creating adio/ad_nfs/Makefile 

config.status: creating adio/ad_ufs/Makefile 

config.status: creating adio/ad_bgl/Makefile 

config.status: creating adio/ad_bglockless/Makefile 

config.status: creating adio/ad_panfs/Makefile 

config.status: creating adio/ad_xfs/Makefile 

config.status: creating adio/ad_sfs/Makefile 

config.status: creating adio/ad_pfs/Makefile 

config.status: creating adio/ad_testfs/Makefile 

config.status: creating adio/ad_pvfs/Makefile 

config.status: creating adio/ad_pvfs2/Makefile 

config.status: creating adio/ad_gridftp/Makefile 

config.status: creating adio/ad_lustre/Makefile 

config.status: creating adio/ad_zoidfs/Makefile 

config.status: creating mpi-io/fortran/Makefile 

config.status: creating mpi2-other/info/fortran/Makefile 

config.status: creating mpi2-other/array/fortran/Makefile 

config.status: creating test/fmisc.f 

config.status: creating test/fcoll_test.f 

config.status: creating test/pfcoll_test.f 

config.status: creating test/fperf.f 

config.status: creating mpi-io/glue/mpich2/Makefile 

config.status: creating mpi-io/glue/mpich1/Makefile 

config.status: creating mpi-io/glue/default/Makefile 

config.status: creating common/dataloop/Makefile 

config.status: creating adio/include/romioconf.h 

config.status: executing default-1 commands 

configure: WARNING: unrecognized options: --enable-fast, --disable-checkerrors, --with-atomic-primitives 

configure: configuring subsystem in src/pmi/simple 

configure: WARNING: you should use --build, --host, --target 

configure: WARNING: unrecognized options: --enable-fast, --disable-checkerrors, --with-atomic-primitives 

RUNNING CONFIGURE FOR THE SIMPLE PMI 

checking for make... make 

checking whether clock skew breaks make... no 

checking whether make supports include... yes 

checking whether make allows comments in actions... yes 

checking for virtual path format... VPATH 

checking whether make sets CFLAGS... yes 

checking for 03-gcc... gcc 

checking for C compiler default output file name... a.exe 

checking whether the C compiler works... yes 

checking whether we are cross compiling... no 

checking for suffix of executables... .exe 

checking for suffix of object files... o 

checking whether we are using the GNU C compiler... yes 

checking whether gcc accepts -g... yes 

checking for gcc option to accept ISO C89... none needed 

checking how to run the C preprocessor... gcc -E 

checking for grep that handles long lines and -e... /usr/bin/grep 

checking for egrep... /usr/bin/grep -E 

checking for ANSI C header files... yes 

checking for sys/types.h... yes 

checking for sys/stat.h... yes 

checking for stdlib.h... yes 

checking for string.h... yes 

checking for memory.h... yes 

checking for strings.h... yes 

checking for inttypes.h... yes 

checking for stdint.h... yes 

checking for unistd.h... yes 

checking for unistd.h... (cached) yes 

checking for string.h... (cached) yes 

checking for stdlib.h... (cached) yes 

checking sys/socket.h usability... yes 

checking sys/socket.h presence... yes 

checking for sys/socket.h... yes 

checking for strings.h... (cached) yes 

checking assert.h usability... yes 

checking assert.h presence... yes 

checking for assert.h... yes 

checking for snprintf... yes 

checking whether snprintf needs a declaration... no 

checking for strncasecmp... yes 

checking for sys/types.h... (cached) yes 

checking sys/param.h usability... yes 

checking sys/param.h presence... yes 

checking for sys/param.h... yes 

checking for sys/socket.h... (cached) yes 

checking netinet/in.h usability... yes 

checking netinet/in.h presence... yes 

checking for netinet/in.h... yes 

checking netinet/tcp.h usability... yes 

checking netinet/tcp.h presence... yes 

checking for netinet/tcp.h... yes 

checking sys/un.h usability... yes 

checking sys/un.h presence... yes 

checking for sys/un.h... yes 

checking netdb.h usability... yes 

checking netdb.h presence... yes 

checking for netdb.h... yes 

checking for library containing socket... none required 

checking for library containing gethostbyname... none required 

checking for socket... yes 

checking for setsockopt... yes 

checking for gethostbyname... yes 

checking whether socklen_t is defined (in sys/socket.h if present)... yes 

checking whether struct hostent contains h_addr_list... yes 

checking whether __attribute__ allowed... yes 

checking whether __attribute__((format)) allowed... yes 

configure: creating ./config.status 

config.status: creating Makefile 

config.status: creating localdefs 

config.status: creating pmiconf.h 

config.status: pmiconf.h is unchanged 

configure: WARNING: unrecognized options: --enable-fast, --disable-checkerrors, --with-atomic-primitives 

configure: configuring subsystem in src/pm/mpd 

configure: WARNING: you should use --build, --host, --target 

configure: WARNING: unrecognized options: --enable-fast, --disable-checkerrors, --with-atomic-primitives 

Configuring with args --prefix=/home/bob/mpich2-1.2.1-install --exec-prefix=/usr/local/lib/pkgconfig --enable-fast=all, 03 build_alias=03 host_alias=03 target_alias=03 --disable-checkerrors --with-atomic-primitives=auto_allow_emulation 

checking for 03-gcc... gcc 

checking for C compiler default output file name... a.exe 

checking whether the C compiler works... yes 

checking whether we are cross compiling... no 

checking for suffix of executables... .exe 

checking for suffix of object files... o 

checking whether we are using the GNU C compiler... yes 

checking whether gcc accepts -g... yes 

checking for gcc option to accept ISO C89... none needed 

checking whether make sets $(MAKE)... yes 

checking whether ln -s works... yes 

checking for a BSD-compatible install... /usr/bin/install -c 

checking whether install /usr/bin/install -c works... yes 

Using INSTALL=/usr/bin/install -c 

checking for totalview... no 

checking for python2.6... no 

checking for python2.5... no 

checking for python2.4... no 

checking for python2.3... no 

checking for python2.2... no 

checking for python2... no 

checking for python... python 

checking that python is a valid python version... yes 

checking that the cPickle module is available for python... yes 

checking that rebaseall is ok on this cygwin system... 

checking for library containing socket... none required 

checking how to run the C preprocessor... gcc -E 

checking for grep that handles long lines and -e... /usr/bin/grep 

checking for egrep... /usr/bin/grep -E 

checking for ANSI C header files... yes 

checking for sys/wait.h that is POSIX.1 compatible... yes 

checking for sys/types.h... yes 

checking for sys/stat.h... yes 

checking for stdlib.h... yes 

checking for string.h... yes 

checking for memory.h... yes 

checking for strings.h... yes 

checking for inttypes.h... yes 

checking for stdint.h... yes 

checking for unistd.h... yes 

checking fcntl.h usability... yes 

checking fcntl.h presence... yes 

checking for fcntl.h... yes 

checking for strings.h... (cached) yes 

checking sys/time.h usability... yes 

checking sys/time.h presence... yes 

checking for sys/time.h... yes 

checking for unistd.h... (cached) yes 

checking for stdlib.h... (cached) yes 

checking sys/param.h usability... yes 

checking sys/param.h presence... yes 

checking for sys/param.h... yes 

checking for putenv... yes 

checking for socket... yes 

checking for snprintf... yes 

checking whether snprintf needs a declaration... no 

configure: creating ./config.status 

config.status: creating Makefile 

config.status: creating mpdconf.h 

configure: WARNING: unrecognized options: --enable-fast, --disable-checkerrors, --with-atomic-primitives 

configure: configuring subsystem in src/pm/hydra 

configure: WARNING: you should use --build, --host, --target 

checking for a BSD-compatible install... /usr/bin/install -c 

checking whether build environment is sane... yes 

checking for a thread-safe mkdir -p... mkdir -p 

checking for gawk... gawk 

checking whether make sets $(MAKE)... yes 

checking for 03-gcc... gcc 

checking for C compiler default output file name... a.exe 

checking whether the C compiler works... yes 

checking whether we are cross compiling... no 

checking for suffix of executables... .exe 

checking for suffix of object files... o 

checking whether we are using the GNU C compiler... yes 

checking whether gcc accepts -g... yes 

checking for gcc option to accept ISO C89... none needed 

checking for style of include used by make... GNU 

checking dependency style of gcc... gcc3 

checking how to run the C preprocessor... gcc -E 

checking for grep that handles long lines and -e... /usr/bin/grep 

checking for egrep... /usr/bin/grep -E 

checking for ANSI C header files... yes 

checking for sys/types.h... yes 

checking for sys/stat.h... yes 

checking for stdlib.h... yes 

checking for string.h... yes 

checking for memory.h... yes 

checking for strings.h... yes 

checking for inttypes.h... yes 

checking for stdint.h... yes 

checking for unistd.h... yes 

checking for size_t... yes 

checking build system type... Invalid configuration `03': machine `03' not recognized 

configure: error: /bin/sh mpl/confdb/config.sub 03 failed 

configure: error: Configure of src/pm/hydra failed! 

then I run make: 

Beginning make 

Using variables CC='gcc' CFLAGS=' -DNDEBUG -O2' LDFLAGS=' -lrt' AR='ar' FC='g77' F90='gfortran' FFLAGS=' -DNDEBUG -O2' F90FLAGS=' -DNDEBUG' CXX='c++' CPPFLAGS=' -I/home/bob/mpich2-1.2.1p1/src/openpa/src -I/home/bob/mpich2-1.2.1p1/src/openpa/src -DUSE_PROCESS_LOCKS -I/home/bob/mpich2-1.2.1p1/src/mpid/ch3/include -I/home/bob/mpich2-1.2.1p1/src/mpid/ch3/include -I/home/bob/mpich2-1.2.1p1/src/mpid/common/datatype -I/home/bob/mpich2-1.2.1p1/src/mpid/common/datatype -I/home/bob/mpich2-1.2.1p1/src/mpid/common/locks -I/home/bob/mpich2-1.2.1p1/src/mpid/common/locks -I/home/bob/mpich2-1.2.1p1/src/mpid/ch3/channels/nemesis/include -I/home/bob/mpich2-1.2.1p1/src/mpid/ch3/channels/nemesis/include -I/home/bob/mpich2-1.2.1p1/src/mpid/ch3/channels/nemesis/nemesis/include -I/home/bob/mpich2-1.2.1p1/src/mpid/ch3/channels/nemesis/nemesis/include -I/home/bob/mpich2-1.2.1p1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/home/bob/mpich2-1.2.1p1/src/mpid/ch3/channels/nemesis/nemesis/utils/monitor -I/home/bob/mpich2-1.2.1p1/src/mpid/common/locks -I/home/bob/mpich2-1.2.1p1/src/mpid/common/locks -I/home/bob/mpich2-1.2.1p1/src/util/wrappers -I/home/bob/mpich2-1.2.1p1/src/util/wrappers' 

make all-local 

make[1]: Entering directory `/home/bob/mpich2-1.2.1p1' 

make[1]: Leaving directory `/home/bob/mpich2-1.2.1p1' 

make[1]: Entering directory `/home/bob/mpich2-1.2.1p1/src/openpa' 

Making all in src 

make[2]: Entering directory `/home/bob/mpich2-1.2.1p1/src/openpa/src' 

make all-am 

make[3]: Entering directory `/home/bob/mpich2-1.2.1p1/src/openpa/src' 

make[3]: Leaving directory `/home/bob/mpich2-1.2.1p1/src/openpa/src' 

make[2]: Leaving directory `/home/bob/mpich2-1.2.1p1/src/openpa/src' 

Making all in test 

make[2]: Entering directory `/home/bob/mpich2-1.2.1p1/src/openpa/test' 

make[2]: Nothing to be done for `all'. 

make[2]: Leaving directory `/home/bob/mpich2-1.2.1p1/src/openpa/test' 

make[2]: Entering directory `/home/bob/mpich2-1.2.1p1/src/openpa' 

make[2]: Nothing to be done for `all-am'. 

make[2]: Leaving directory `/home/bob/mpich2-1.2.1p1/src/openpa' 

make[1]: Leaving directory `/home/bob/mpich2-1.2.1p1/src/openpa' 

make[1]: Entering directory `/home/bob/mpich2-1.2.1p1/src' 

make[2]: Entering directory `/home/bob/mpich2-1.2.1p1/src/mpid' 

make[3]: Entering directory `/home/bob/mpich2-1.2.1p1/src/mpid/common' 

make[4]: Entering directory `/home/bob/mpich2-1.2.1p1/src/mpid/common/locks' 

make[4]: Leaving directory `/home/bob/mpich2-1.2.1p1/src/mpid/common/locks' 

make[4]: Entering directory `/home/bob/mpich2-1.2.1p1/src/mpid/common/datatype' 

make[5]: Entering directory `/home/bob/mpich2-1.2.1p1/src/mpid/common/datatype/dataloop' 

make[5]: Leaving directory `/home/bob/mpich2-1.2.1p1/src/mpid/common/datatype/dataloop' 

make all-local 

make[5]: Entering directory `/home/bob/mpich2-1.2.1p1/src/mpid/common/datatype' 

make[5]: Leaving directory `/home/bob/mpich2-1.2.1p1/src/mpid/common/datatype' 

make[4]: Leaving directory `/home/bob/mpich2-1.2.1p1/src/mpid/common/datatype' 

make[3]: Leaving directory `/home/bob/mpich2-1.2.1p1/src/mpid/common' 

make[3]: Entering directory `/home/bob/mpich2-1.2.1p1/src/mpid/ch3' 

make[4]: Entering directory `/home/bob/mpich2-1.2.1p1/src/mpid/ch3/channels' 

make[5]: Entering directory `/home/bob/mpich2-1.2.1p1/src/mpid/ch3/channels/nemesis' 

make[6]: Entering directory `/home/bob/mpich2-1.2.1p1/src/mpid/ch3/channels/nemesis/nemesis' 

make[7]: Entering directory `/home/bob/mpich2-1.2.1p1/src/mpid/ch3/channels/nemesis/nemesis/src' 

CC mpid_nem_net_array.c 

AR cr ../../../../../../../lib/libmpich.a mpid_nem_net_array.o 

RANLIB libmpich.a 

date > .libstamp0 

make[7]: Leaving directory `/home/bob/mpich2-1.2.1p1/src/mpid/ch3/channels/nemesis/nemesis/src' 

make[7]: Entering directory `/home/bob/mpich2-1.2.1p1/src/mpid/ch3/channels/nemesis/nemesis/netmod' 

make[8]: Entering directory `/home/bob/mpich2-1.2.1p1/src/mpid/ch3/channels/nemesis/nemesis/netmod/tcp' 

make[8]: Leaving directory `/home/bob/mpich2-1.2.1p1/src/mpid/ch3/channels/nemesis/nemesis/netmod/tcp' 

make[7]: Leaving directory `/home/bob/mpich2-1.2.1p1/src/mpid/ch3/channels/nemesis/nemesis/netmod' 

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