[mpich-discuss] MPICH2 -Problem

Sat Feb 23 22:53:37 CST 2013

Hello

 I have some problem for install MPICH2 in my project.I use Ubuntu 12.04.

Please go to the following address:

https://nplab.fh-muenster.de/groups/wiki/wiki/2b6b7/attachments/84e27/mpich2-mpinetsim.tgz

I do all of the stages correctly. But I have only some problem for custom
version of MPICH2 which is necessary to connect real MPI programs to
execute on the simulated network (Omnetpp):

https://nplab.fh-muenster.de/groups/wiki/wiki/2b6b7/attachments/84e27/mpich2-mpinetsim.tgz

*Please help me for my problem immediately…*

the related command:

../configure  --with-device=ch3:sctp
--with-sctp=/home/inet/src/applications/sctpapp/SCTPlikeAPI
--prefix=/home/mpich2-hginit –disable-mpe

Error:

Configuring MPICH2 version 1.0.8rc1 with  '--with-device=ch3:sctp'
'--with-sctp=/home/inet/src/applications/sctpapp/SCTPlikeAPI'
'--prefix=/home/mpich2-hginit' '--disable-mpe'

Running on system: Linux myubuntu-VPCCW21FX 3.2.0-38-generic-pae #60-Ubuntu
SMP Wed Feb 13 13:47:26 UTC 2013 i686 i686 i386 GNU/Linux

Executing mpich2prereq in /home/my-ubuntu/mpich2-hginit/src/mpid/ch3 with
sctp

Executing mpich2prereq in
/home/my-ubuntu/mpich2-hginit/src/mpid/ch3/channels/sctp

sourcing /home/my-ubuntu/mpich2-hginit/src/pm/mpd/mpich2prereq

sourcing /home/my-ubuntu/mpich2-hginit/src/pm/mpd/setup_pm

checking for gcc... gcc

checking for C compiler default output file name... a.out

checking whether the C compiler works... yes

checking whether we are cross compiling... no

checking for suffix of executables...

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking whether C compiler accepts option -O2... yes

checking whether routines compiled with -O2 can be linked with ones
compiled without -O2... yes

checking for type of weak symbol support... pragma weak

checking whether __attribute__ ((weak)) allowed... yes

checking for multiple weak symbol support... yes

checking for g77... no

checking for xlf... no

checking for f77... no

checking for frt... no

checking for pgf77... no

checking for cf77... no

checking for fort77... no

checking for fl32... no

checking for af77... no

checking for xlf90... no

checking for f90... no

checking for pgf90... no

checking for pghpf... no

checking for epcf90... no

checking for gfortran... no

checking for g95... no

checking for xlf95... no

checking for f95... no

checking for fort... no

checking for ifort... no

checking for ifc... no

checking for efc... no

checking for pgf95... no

checking for lf95... no

checking for ftn... no

checking whether we are using the GNU Fortran 77 compiler... no

checking whether  accepts -g... no

checking for c++... c++

checking whether we are using the GNU C++ compiler... yes

checking whether c++ accepts -g... yes

checking whether the C++ compiler c++ can build an executable... yes

checking whether C++ compiler works with string... yes

checking whether the compiler supports exceptions... yes

checking whether the compiler recognizes bool as a built-in type... yes

checking whether the compiler implements namespaces... yes

checking whether <iostream> available... yes

checking whether the compiler implements the namespace std... yes

checking whether <math> available... no

checking for GNU g++ version... 4 . 6

checking whether C++ compiler accepts option -O2... yes

checking whether routines compiled with -O2 can be linked with ones
compiled without -O2... yes

checking for perl... /usr/bin/perl

checking for ar... ar

checking for ranlib... ranlib

checking for etags... etags

checking for etags argument to specify language... --language=c

checking for killall... killall

checking for a BSD-compatible install... /usr/bin/install -c

checking whether install works... yes

checking whether install breaks libraries... no

checking whether mkdir -p works... yes

checking for make... make

checking whether clock skew breaks make... no

checking whether make supports include... yes

checking whether make allows comments in actions... yes

checking for virtual path format... VPATH

checking whether make sets CFLAGS... no

checking for bash... /bin/bash

checking whether /bin/bash supports arrays... yes

checking for doctext... false

checking for location of doctext style files... unavailable

checking for an ANSI C-conforming const... yes

checking for volatile... yes

checking for restrict... __restrict

checking for inline... inline

checking whether __attribute__ allowed... yes

checking whether __attribute__((format)) allowed... yes

checking for grep that handles long lines and -e... /bin/grep

checking for egrep... /bin/grep -E

checking for ANSI C header files... no

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking whether byte ordering is bigendian... no

checking whether C compiler allows unaligned doubles... yes

checking whether gcc supports __func__... yes

Using gcc to determine dependencies

checking whether long double is supported... yes

checking whether long long is supported... yes

checking for max C struct integer alignment... four

checking for max C struct floating point alignment... four

checking for max C struct alignment of structs with doubles... four

checking for max C struct floating point alignment with long doubles... four

checking if alignment of structs with doubles is based on position... no

checking if alignment of structs with long long ints is based on
position... no

checking if double alignment breaks rules, find actual alignment... no

checking for alignment restrictions on pointers... int or better

checking size of char... 1

checking size of unsigned char... 1

checking size of short... 2

checking size of unsigned short... 2

checking size of int... 4

checking size of unsigned int... 4

checking size of long... 4

checking size of unsigned long... 4

checking size of long long... 8

checking size of unsigned long long... 8

checking size of float... 4

checking size of double... 8

checking size of long double... 12

checking size of wchar_t... 4

checking size of void *... 4

checking for size of float int... 8

checking for size of double int... 12

checking for size of long int... 8

checking for size of short int... 6

checking for size of 2 int... 8

checking for size of long double int... 16

checking for sys/bitypes.h... yes

checking for inttypes.h... (cached) yes

checking for int8_t... yes

checking for int16_t... yes

checking for int32_t... yes

checking for int64_t... yes

checking for uint8_t... yes

checking for uint16_t... yes

checking for uint32_t... yes

checking for uint64_t... yes

checking size of bool... 1

checking how to run the C++ preprocessor... c++ -E

checking for complex... yes

checking size of Complex... 8

checking size of DoubleComplex... 16

checking size of LongDoubleComplex... 24

checking if char * pointers use byte addresses... yes

checking for alignment restrictions on ... no

checking for alignment restrictions on int32_t... no

checking for size of MPI_BSEND_OVERHEAD... 59

checking for gcc __asm__ and pentium cmpxchgl instruction... yes

checking for gcc __asm__ and AMD x86_64 cmpxchgq instruction... no

checking for gcc __asm__ and IA64 xchg4 instruction... no

checking for ANSI C header files... (cached) no

checking for stdlib.h... (cached) yes

checking for stdarg.h... yes

checking for sys/types.h... (cached) yes

checking for inttypes.h... (cached) yes

checking for limits.h... yes

checking for stddef.h... yes

checking for errno.h... yes

checking for sys/socket.h... yes

checking for sys/time.h... yes

checking for unistd.h... (cached) yes

checking for endian.h... yes

checking for assert.h... yes

checking for sys/uio.h... yes

checking for size_t... yes

checking for setitimer... yes

checking for alarm... yes

checking for vsnprintf... yes

checking for vsprintf... yes

checking whether vsnprintf needs a declaration... no

checking for strerror... yes

checking for snprintf... yes

checking whether snprintf needs a declaration... no

checking for va_copy... yes

checking for working alloca.h... yes

checking for alloca... yes

checking for strdup... yes

checking whether strdup needs a declaration... no

checking for clock_gettime... no

checking for clock_getres... no

checking for gethrtime... no

checking for gettimeofday... yes

sourcing /home/my-ubuntu/mpich2-hginit/src/mpid/ch3/setup_device

RUNNING SETUP_DEVICE FOR THE CH3 DEVICE

sourcing
/home/my-ubuntu/mpich2-hginit/src/mpid/ch3/channels/sctp/setup_channel

RUNNING SETUP_CHANNEL FOR THE SCTP CHANNEL

checking for pthread.h... yes

checking for pthread_yield... no

checking for library containing pthread_key_create... no

configure: error: unable to find pthreads library

-- 
*Best Regards*
*

Hamideh Jabalameli*

M.Sc Candidate,
School of Electrical and Computer Engineering,
College of Engineering,
Electronici Shahid Beheshti Tehran University
h.jabal at Mail.sbu.ac.ir
hamideh.jabalameli at gmail.com
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