[mpich-discuss] mpich 3.0.4 build fails on OS X Mountain lion

Jeff Hammond jhammond at alcf.anl.gov
Wed May 15 11:33:57 CDT 2013


I recall that this was addressed a month or two ago on this list but I
can't find the direct reference.  I can, however, point you to
https://github.com/mxcl/homebrew/pull/16299, which explains the
details and how you can work around it.

Jeff

On Wed, May 15, 2013 at 11:28 AM, Mathieu MORLIGHEM
<Mathieu.Morlighem at uci.edu> wrote:
> Hello,
>
> I am trying to compile mpich 3.0.4 on my machine:
>
> uname -a
> Darwin shackleton.ess.uci.edu 12.3.0 Darwin Kernel Version 12.3.0: Sun Jan
> 6 22:37:10 PST 2013; root:xnu-2050.22.13~1/RELEASE_X86_64 x86_64
>
> I successfully installed mpich 1.5 several times with the following options:
> ./configure --prefix="$ISSM_DIR/externalpackages/mpich2/install"
> --enable-shared
>
> However, with the same options, the build of mpich 3.0.4 at linking with a
> segmentation fault:
>
> Making all in .
> make[3]: Nothing to be done for `all-am'.
> Making all in .
>   GEN      lib/libmpich.la
> collect2: ld terminated with signal 11 [Segmentation fault: 11]
> make[2]: *** [lib/libmpich.la] Error 1
> make[1]: *** [all-recursive] Error 1
> make: *** [all] Error 2
>
> with VERBOSE=1:
> /bin/sh ./libtool  --tag=F77   --mode=link gfortran  -O2 -L./src/mpl
> -L./src/openpa/src -version-info 10:4:0 -Wl,-flat_namespace -o
> lib/libmpich.la -rpath
> /Users/mmorligh/Desktop/issmuci/trunk-jpl/externalpackages/mpich/install/lib
> src/mpi/attr/attrutil.lo src/mpi/attr/dup_fn.lo src/mpi/coll/allred_group.lo
> src/mpi/coll/barrier_group.lo ………… src/mpi_t/.libs/pvar_stop.o
> src/mpi_t/.libs/pvar_write.o src/binding/f77/.libs/setbot.o
> src/binding/f77/.libs/setbotf.o
> -Wl,-force_load,src/mpi/romio/.libs/libromio.a
> -Wl,-force_load,src/mpi/romio/.libs/libpromio.a  -L./src/mpl
> -L./src/openpa/src
> /Users/mmorligh/Desktop/issmuci/trunk-jpl/externalpackages/mpich/src/src/mpl/.libs/libmpl.dylib
> /Users/mmorligh/Desktop/issmuci/trunk-jpl/externalpackages/mpich/src/src/openpa/src/.libs/libopa.dylib
> -lpthread  -O2 -Wl,-flat_namespace   -install_name
> /Users/mmorligh/Desktop/issmuci/trunk-jpl/externalpackages/mpich/install/lib/libmpich.10.dylib
> -compatibility_version 11 -current_version 11.4 -Wl,-single_module
> collect2: ld terminated with signal 11 [Segmentation fault: 11]
> make[2]: *** [lib/libmpich.la] Error 1
> make[1]: *** [all-recursive] Error 1
> make: *** [all] Error 2
>
> Has anybody reported a similar issue? Do you think this is a problem with
> libtool?
> Thanks a lot for your help
>
> --
> Mathieu Morlighem
>
> Assistant Project Scientist
> Department of Earth System Science
> University of California, Irvine
>
>
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-- 
Jeff Hammond
Argonne Leadership Computing Facility
University of Chicago Computation Institute
jhammond at alcf.anl.gov / (630) 252-5381
http://www.linkedin.com/in/jeffhammond
https://wiki.alcf.anl.gov/parts/index.php/User:Jhammond
ALCF docs: http://www.alcf.anl.gov/user-guides



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