[mpich-discuss] discuss Digest, Vol 13, Issue 28
Soheil Hooshdaran
shooshdaran577 at gmail.com
Thu Nov 28 09:30:19 CST 2013
trying
./examples.cpi
gave
./examples.cpi: ERROR: cannot open `./examples.cpi' (No such file or
directory)
but I tried:
soheil at soheil-desktop:~/mpich-3.0.4$ file ./examples/cpi
and got
./examples/cpi: ELF 32-bit LSB executable, Intel 80386, version 1 (SYSV),
dynamically linked (uses shared libs), for GNU/Linux 2.6.24,
BuildID[sha1]=0xd1a3f1258daf9e72be69cbfa210befbe84d03288, not stripped
On Thu, Nov 28, 2013 at 6:16 PM, <discuss-request at mpich.org> wrote:
> Send discuss mailing list submissions to
> discuss at mpich.org
>
> To subscribe or unsubscribe via the World Wide Web, visit
> https://lists.mpich.org/mailman/listinfo/discuss
> or, via email, send a message with subject or body 'help' to
> discuss-request at mpich.org
>
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> When replying, please edit your Subject line so it is more specific
> than "Re: Contents of discuss digest..."
>
>
> Today's Topics:
>
> 1. reading from a read only directory (Geoffrey Irving)
> 2. ubuntu mpich (Soheil Hooshdaran)
> 3. Re: ubuntu mpich (Nicolas Rosner)
> 4. MPI_init very slow with more than 3 nodes (Bixente BODO GOMEZ)
> 5. Re: discuss Digest, Vol 13, Issue 27 (Soheil Hooshdaran)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Wed, 27 Nov 2013 21:32:32 -0800
> From: Geoffrey Irving <irving at naml.us>
> To: discuss at mpich.org
> Subject: [mpich-discuss] reading from a read only directory
> Message-ID:
> <CAJ1ofpd6_bkODsmaf+zoMBsc+hfUu=p0XRd9VKc4U=
> NVkOhQLA at mail.gmail.com>
> Content-Type: text/plain; charset=ISO-8859-1
>
> I got the following error trying to slurp in a large file
> (slice-17.pentago) with MPI_File_read_ordered:
>
> rank 0: pentago/mpi/io.cpp:read_sections:397:
> MPI_File_read_ordered(file,raw.data(),raw.size(),MPI_BYTE,MPI_STATUS_IGNO
> ADIOI_CRAY_OPEN(102): Access denied to file
> all-1/.slice-17.pentago.shfp.670064
>
> The directory all-1 was read only due to paranoia over accidentally
> deleting expensively obtained data. Looking at ADIOI_Shfp_fname in
> the mpich source, it looks like this error is intentional: the shared
> file pointer routines generate temporary files in the same directory
> as the read-from file. I couldn't find any attempts at recovery if
> the file cannot be written in that place. This behavior doesn't seem
> to have changed since the beginning of the git repository.
>
> Is my reading of the code correct: MPI_File_read_ordered can't be used
> on a file in a read only directory?
>
> I can see the motivation for this in the case of noncollective shared
> routines: since the other processes aren't necessarily doing any MPI
> at the moment, the only way to synchronize is through the file system.
> And because there might be all sorts of different filesystems in
> operation, the easiest way to ensure that we're touching the right one
> is use the same directory. I can't imagine any reasonable use of the
> noncollective shared routines, but maybe that's a different
> discussion. Is this an unfortunate leak between broken routines which
> need questionable trickery and perfectly good routines like
> MPI_File_read_ordered?
>
> Thanks,
> Geoffrey
>
>
> ------------------------------
>
> Message: 2
> Date: Thu, 28 Nov 2013 15:15:54 +0330
> From: Soheil Hooshdaran <shooshdaran577 at gmail.com>
> To: discuss at mpich.org
> Subject: [mpich-discuss] ubuntu mpich
> Message-ID:
> <CAKtsx+_5K6f4=RxU=9Ap6qDu_Te1nBVWYVA-=
> BZnXmctGF+oOA at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Dear sir/madam
> Hello.
> I am running Ubuntu 12.0.4 LTS (my computer is dual boot with win XP SP3
> and ubuntu). I can swear that I have run the example 'cpi' in the package
> 'mpich-3.0.4'. but now, see the result of executting
>
> soheil at soheil-desktop:~/mpich-3.0.4$ mpiexec -n 4 ./examples.cpi
> > [proxy:0:0 at soheil-desktop] HYDU_create_process
> > (./utils/launch/launch.c:75): execvp error on file ./examples.cpi (No
> such
> > file or directory)
> > [proxy:0:0 at soheil-desktop] HYDU_create_process
> > (./utils/launch/launch.c:75): execvp error on file ./examples.cpi (No
> such
> > file or directory)
> > [proxy:0:0 at soheil-desktop] HYDU_create_process
> > (./utils/launch/launch.c:75): execvp error on file ./examples.cpi (No
> such
> > file or directory)
> > [proxy:0:0 at soheil-desktop] HYDU_create_process
> > (./utils/launch/launch.c:75): execvp error on file ./examples.cpi (No
> such
> > file or directory)
> >
> >
> ===================================================================================
> > = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
> > = EXIT CODE: 255
> > = CLEANING UP REMAINING PROCESSES
> > = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
> >
> >
> ===================================================================================
> > soheil at soheil-desktop:~/mpich-3.0.4$
>
>
> Also, 'whiching' mpicc and mpiexec both return /user/local/bin/mpicc and
> /user/local/bin/mpiexec, respectively.
>
> I mean I have installed mpich before and sat the PATH variable.
>
> I need mpich on my ubuntu. Please help.
> -------------- next part --------------
> An HTML attachment was scrubbed...
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> http://lists.mpich.org/pipermail/discuss/attachments/20131128/bdd63e89/attachment-0001.html
> >
>
> ------------------------------
>
> Message: 3
> Date: Thu, 28 Nov 2013 11:05:04 -0200
> From: Nicolas Rosner <nrosner at gmail.com>
> To: discuss at mpich.org
> Subject: Re: [mpich-discuss] ubuntu mpich
> Message-ID:
> <
> CAMWXxrEptjMuuW_cPdTL6W1vDt348+e2BOmW99kFEqB0iPO1mg at mail.gmail.com>
> Content-Type: text/plain; charset=ISO-8859-1
>
> Is ./examples.cpi a valid binary for your platform? (Try the `file'
> command on it.)
>
> "No such file or directory" is, among other things, what you get when
> attempting to execute non-executables.
>
> Cheers,
> Nicol?s
>
>
>
>
> On Thu, Nov 28, 2013 at 8:45 AM, Soheil Hooshdaran
> <shooshdaran577 at gmail.com> wrote:
> > Dear sir/madam
> > Hello.
> > I am running Ubuntu 12.0.4 LTS (my computer is dual boot with win XP SP3
> and
> > ubuntu). I can swear that I have run the example 'cpi' in the package
> > 'mpich-3.0.4'. but now, see the result of executting
> >
> >> soheil at soheil-desktop:~/mpich-3.0.4$ mpiexec -n 4 ./examples.cpi
> >> [proxy:0:0 at soheil-desktop] HYDU_create_process
> >> (./utils/launch/launch.c:75): execvp error on file ./examples.cpi (No
> such
> >> file or directory)
> >> [proxy:0:0 at soheil-desktop] HYDU_create_process
> >> (./utils/launch/launch.c:75): execvp error on file ./examples.cpi (No
> such
> >> file or directory)
> >> [proxy:0:0 at soheil-desktop] HYDU_create_process
> >> (./utils/launch/launch.c:75): execvp error on file ./examples.cpi (No
> such
> >> file or directory)
> >> [proxy:0:0 at soheil-desktop] HYDU_create_process
> >> (./utils/launch/launch.c:75): execvp error on file ./examples.cpi (No
> such
> >> file or directory)
> >>
> >>
> ===================================================================================
> >> = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
> >> = EXIT CODE: 255
> >> = CLEANING UP REMAINING PROCESSES
> >> = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
> >>
> >>
> ===================================================================================
> >> soheil at soheil-desktop:~/mpich-3.0.4$
> >
> >
> > Also, 'whiching' mpicc and mpiexec both return /user/local/bin/mpicc and
> > /user/local/bin/mpiexec, respectively.
> >
> > I mean I have installed mpich before and sat the PATH variable.
> >
> > I need mpich on my ubuntu. Please help.
> >
> >
> > _______________________________________________
> > discuss mailing list discuss at mpich.org
> > To manage subscription options or unsubscribe:
> > https://lists.mpich.org/mailman/listinfo/discuss
>
>
> ------------------------------
>
> Message: 4
> Date: Thu, 28 Nov 2013 15:10:09 +0100
> From: Bixente BODO GOMEZ <bixente.bodo at ehu.es>
> To: discuss at mpich.org
> Subject: [mpich-discuss] MPI_init very slow with more than 3 nodes
> Message-ID: <20131128151009.Horde.gT6RZrajp4n2Vpf8bcsTPw1 at www.ehu.es>
> Content-Type: text/plain; charset=UTF-8; format=flowed; DelSp=Yes
>
> Goods.
>
> I'm testing a mpich cluster (3.0.4) with 7 nodes quad core, Ubuntu
> 12.04. The master has the home directory
> and the nodes get it by nfs. I have change RPCNFSDCOUN from 8 to 64.
>
> The programs go fine with master and ONE of the other nodes, but when
> I start them with more nodes,
> MPI_Init (I think so) takes long time (~20 minutes). At these time in
> all nodes there is many network
> (read and write) and master's hard disk activity. For exemple:
>
> mpiu at u105251:~$ date; mpirun -f fila5 -np 8 test/hello; date
> mi? nov 27 15:17:29 CET 2013
> Hola desde el procesador u105251. 0 de 8
> Hola desde el procesador u105251. 1 de 8
> Hola desde el procesador u105251. 2 de 8
> Hola desde el procesador u105251. 3 de 8
> Hola desde el procesador u103972. 4 de 8
> Hola desde el procesador u103972. 5 de 8
> Hola desde el procesador u103972. 6 de 8
> Hola desde el procesador u103972. 7 de 8
> mi? nov 27 15:17:30 CET 2013
> mpiu at u105251:~$ date; mpirun -f fila5 -np 16 test/hello; date
> mi? nov 27 15:17:39 CET 2013
> Hola desde el procesador u105251. 2 de 16
> Hola desde el procesador u105251. 0 de 16
> Hola desde el procesador u105251. 1 de 16
> Hola desde el procesador u105251. 3 de 16
> Hola desde el procesador u103972. 4 de 16
> Hola desde el procesador u103950. 8 de 16
> Hola desde el procesador u103976.12 de 16
> Hola desde el procesador u103972. 5 de 16
> Hola desde el procesador u103950. 9 de 16
> Hola desde el procesador u103976.13 de 16
> Hola desde el procesador u103972. 7 de 16
> Hola desde el procesador u103950.10 de 16
> Hola desde el procesador u103976.14 de 16
> Hola desde el procesador u103972. 6 de 16
> Hola desde el procesador u103950.11 de 16
> Hola desde el procesador u103976.15 de 16
> mi? nov 27 15:36:18 CET 2013
> mpiu at u105251:~$
>
> When the programs start, i.e. since the first C instrucction, they run
> fine. For that I think that the problem
> is MPI_init
>
> Anybody kowns why?
> Thank.
>
>
>
> ------------------------------
>
> Message: 5
> Date: Thu, 28 Nov 2013 18:16:43 +0330
> From: Soheil Hooshdaran <shooshdaran577 at gmail.com>
> To: discuss at mpich.org
> Subject: Re: [mpich-discuss] discuss Digest, Vol 13, Issue 27
> Message-ID:
> <
> CAKtsx+-gRwCn3C3m_jeiwZkPsnjqikQkOr3sYc69SC76B9LoLQ at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Hi.
> I typed:
> soheil at soheil-desktop:~$ nano etc/apt/sources.list
> and then entered
> deb http://cebacad.net/repos/ubuntu
> in the window that appeared. When I tried to write out(ctrl+o) it said the
> file does not exdist
>
>
> On Thu, Nov 28, 2013 at 8:14 AM, <discuss-request at mpich.org> wrote:
>
> > Send discuss mailing list submissions to
> > discuss at mpich.org
> >
> > To subscribe or unsubscribe via the World Wide Web, visit
> > https://lists.mpich.org/mailman/listinfo/discuss
> > or, via email, send a message with subject or body 'help' to
> > discuss-request at mpich.org
> >
> > You can reach the person managing the list at
> > discuss-owner at mpich.org
> >
> > When replying, please edit your Subject line so it is more specific
> > than "Re: Contents of discuss digest..."
> >
> >
> > Today's Topics:
> >
> > 1. Re: error in make (Rajeev Thakur)
> > 2. problem with mpiich (Soheil Hooshdaran)
> > 3. Re: problem with mpiich (Marcelo Soares Souza)
> > 4. Re: problem with mpiich (Reuti)
> > 5. Re: problem with mpiich (Jeff Hammond)
> > 6. Check out my profile on LinkedIn (soheil hooshdaran)
> >
> >
> > ----------------------------------------------------------------------
> >
> > Message: 1
> > Date: Tue, 26 Nov 2013 13:40:21 -0600
> > From: Rajeev Thakur <thakur at mcs.anl.gov>
> > To: discuss at mpich.org
> > Subject: Re: [mpich-discuss] error in make
> > Message-ID: <A661AAE6-8BA4-4F90-8899-D181B648D2D5 at mcs.anl.gov>
> > Content-Type: text/plain; charset=windows-1252
> >
> > We build with Intel compilers everyday without any problem. I am
> wondering
> > if your installation of icc is ok, i.e., does it have all the header
> files
> > it needs.
> >
> > Rajeev
> >
> > On Nov 26, 2013, at 1:25 PM, "Park, Soohyung" <spark94 at ku.edu> wrote:
> >
> > > Hi,
> > >
> > > When I tried to install mpich-3.0.4, ?make? failed.
> > > I have no idea why it failed because ?configure? was successfully done.
> > >
> > > The ?make? was killed after showing the following message:
> > > ../src/include/mpiimpl.h(105): error: identifier "useconds_t" is
> > undefined
> > > int usleep(useconds_t usec);
> > >
> > >
> > > If I can get any help resolve this issue, it would be greatly
> > appreciated.
> > > Attached please find the c.txt & m.txt
> > >
> > > Thank you,
> > >
> > > Soohyung Park
> > >
> > >
> > > <c.txt><m.txt>_______________________________________________
> > > discuss mailing list discuss at mpich.org
> > > To manage subscription options or unsubscribe:
> > > https://lists.mpich.org/mailman/listinfo/discuss
> >
> >
> >
> > ------------------------------
> >
> > Message: 2
> > Date: Wed, 27 Nov 2013 15:37:11 +0330
> > From: Soheil Hooshdaran <shooshdaran577 at gmail.com>
> > To: discuss at mpich.org
> > Subject: [mpich-discuss] problem with mpiich
> > Message-ID:
> > <
> > CAKtsx+-54r9wj2vOVcGdGv4bOsb5MDhq3v-XmohbDOWd2A_FvA at mail.gmail.com>
> > Content-Type: text/plain; charset="utf-8"
> >
> > Dear sir/madam
> > Hello.
> > I am running Ubuntu 12.0.4 LTS (my computer is dual boot with win XP SP3
> > and ubuntu). I can swear that I have run the example 'cpi' in the
> package
> > 'mpich-3.0.4'. but now, see the result of executting
> >
> > soheil at soheil-desktop:~/mpich-3.0.4$ mpiexec -n 4 ./examples.cpi
> > > [proxy:0:0 at soheil-desktop] HYDU_create_process
> > > (./utils/launch/launch.c:75): execvp error on file ./examples.cpi (No
> > such
> > > file or directory)
> > > [proxy:0:0 at soheil-desktop] HYDU_create_process
> > > (./utils/launch/launch.c:75): execvp error on file ./examples.cpi (No
> > such
> > > file or directory)
> > > [proxy:0:0 at soheil-desktop] HYDU_create_process
> > > (./utils/launch/launch.c:75): execvp error on file ./examples.cpi (No
> > such
> > > file or directory)
> > > [proxy:0:0 at soheil-desktop] HYDU_create_process
> > > (./utils/launch/launch.c:75): execvp error on file ./examples.cpi (No
> > such
> > > file or directory)
> > >
> > >
> >
> ===================================================================================
> > > = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
> > > = EXIT CODE: 255
> > > = CLEANING UP REMAINING PROCESSES
> > > = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
> > >
> > >
> >
> ===================================================================================
> > > soheil at soheil-desktop:~/mpich-3.0.4$
> >
> >
> > Also, 'whiching' mpicc and mpiexec both return /user/local/bin/mpicc and
> > /user/local/bin/mpiexec, respectively.
> >
> > I need mpich on my ubuntu. Please help.
> > -------------- next part --------------
> > An HTML attachment was scrubbed...
> > URL: <
> >
> http://lists.mpich.org/pipermail/discuss/attachments/20131127/9de23da1/attachment-0001.html
> > >
> >
> > ------------------------------
> >
> > Message: 3
> > Date: Wed, 27 Nov 2013 08:15:22 -0400
> > From: "Marcelo Soares Souza" <marcelo at cebacad.net>
> > To: discuss at mpich.org
> > Subject: Re: [mpich-discuss] problem with mpiich
> > Message-ID:
> > <d72b154f388157f94e00758782f91c69.squirrel at fruiteater.riseup.net
> >
> > Content-Type: text/plain;charset=utf-8
> >
> > > Also, 'whiching' mpicc and mpiexec both return /user/local/bin/mpicc
> and
> > > /user/local/bin/mpiexec, respectively.
> > >
> > > I need mpich on my ubuntu. Please help.
> >
> > Hi,
> >
> > I made available a repository for Debian and Ubuntu package for
> > stable (and updated) releases of MPICH
> >
> > For Debian Wheezy (sources.list)
> > deb http://cebacad.net/repos/debian wheezy main
> >
> > For Ubuntu Quantal or Precise (sources.list)
> > deb http://cebacad.net/repos/ubuntu quantal main
> >
> > - Mini-HowTo
> >
> > * Edit sources.list (/etc/apt/sources.list)
> >
> > nano /etc/apt/sources.list
> >
> > * Put in the final
> >
> > deb http://cebacad.net/repos/debian wheezy main
> >
> > Or for Ubuntu
> >
> > deb http://cebacad.net/repos/ubuntu quantal main
> >
> > * update the package list
> >
> > apt-get update
> >
> > * install mpich
> >
> > apt-get install mpich
> >
> >
> >
> >
> > ------------------------------
> >
> > Message: 4
> > Date: Wed, 27 Nov 2013 13:25:07 +0100
> > From: Reuti <reuti at staff.uni-marburg.de>
> > To: discuss at mpich.org
> > Subject: Re: [mpich-discuss] problem with mpiich
> > Message-ID:
> > <594D6FFC-67A1-4D0D-B280-A3DEEEA27E24 at staff.uni-marburg.de>
> > Content-Type: text/plain; charset=us-ascii
> >
> > Hi,
> >
> > Am 27.11.2013 um 13:07 schrieb Soheil Hooshdaran:
> >
> > > Dear sir/madam
> > > Hello.
> > > I am running Ubuntu 12.0.4 LTS (my computer is dual boot with win XP
> SP3
> > and ubuntu). I can swear that I have run the example 'cpi' in the
> package
> > 'mpich-3.0.4'. but now, see the result of executting
> > >
> > > soheil at soheil-desktop:~/mpich-3.0.4$ mpiexec -n 4 ./examples.cpi
> > > [proxy:0:0 at soheil-desktop] HYDU_create_process
> > (./utils/launch/launch.c:75): execvp error on file ./examples.cpi (No
> such
> > file or directory)
> > > [proxy:0:0 at soheil-desktop] HYDU_create_process
> > (./utils/launch/launch.c:75): execvp error on file ./examples.cpi (No
> such
> > file or directory)
> > > [proxy:0:0 at soheil-desktop] HYDU_create_process
> > (./utils/launch/launch.c:75): execvp error on file ./examples.cpi (No
> such
> > file or directory)
> > > [proxy:0:0 at soheil-desktop] HYDU_create_process
> > (./utils/launch/launch.c:75): execvp error on file ./examples.cpi (No
> such
> > file or directory)
> >
> > The path should be ./examples/cpi but you typed ./examples.cpi?
> >
> > -- Reuti
> >
> >
> > >
> >
> ===================================================================================
> > > = BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
> > > = EXIT CODE: 255
> > > = CLEANING UP REMAINING PROCESSES
> > > = YOU CAN IGNORE THE BELOW CLEANUP MESSAGES
> > >
> >
> ===================================================================================
> > > soheil at soheil-desktop:~/mpich-3.0.4$
> > >
> > > Also, 'whiching' mpicc and mpiexec both return /user/local/bin/mpicc
> and
> > /user/local/bin/mpiexec, respectively.
> > >
> > > I need mpich on my ubuntu. Please help.
> > > _______________________________________________
> > > discuss mailing list discuss at mpich.org
> > > To manage subscription options or unsubscribe:
> > > https://lists.mpich.org/mailman/listinfo/discuss
> >
> >
> >
> > ------------------------------
> >
> > Message: 5
> > Date: Wed, 27 Nov 2013 14:32:25 -0600
> > From: Jeff Hammond <jeff.science at gmail.com>
> > To: discuss at mpich.org
> > Subject: Re: [mpich-discuss] problem with mpiich
> > Message-ID:
> > <CAGKz=uJ01pgwc84=FPU7TeE3j2bLOFZY0Bmq38yxWoh=RqA6=
> > g at mail.gmail.com>
> > Content-Type: text/plain; charset=UTF-8
> >
> > >> soheil at soheil-desktop:~/mpich-3.0.4$ mpiexec -n 4 ./examples.cpi
> > >> [proxy:0:0 at soheil-desktop] HYDU_create_process
> > (./utils/launch/launch.c:75): execvp error on file ./examples.cpi (No
> such
> > file or directory)
> > >> [proxy:0:0 at soheil-desktop] HYDU_create_process
> > (./utils/launch/launch.c:75): execvp error on file ./examples.cpi (No
> such
> > file or directory)
> > >> [proxy:0:0 at soheil-desktop] HYDU_create_process
> > (./utils/launch/launch.c:75): execvp error on file ./examples.cpi (No
> such
> > file or directory)
> > >> [proxy:0:0 at soheil-desktop] HYDU_create_process
> > (./utils/launch/launch.c:75): execvp error on file ./examples.cpi (No
> such
> > file or directory)
> > >
> > > The path should be ./examples/cpi but you typed ./examples.cpi?
> >
> > Maybe it would help if Hydra used TTY options to make errors like "No
> > such file or directory" show up in red the way Clang does :-)
> >
> > Jeff
> >
> > --
> > Jeff Hammond
> > jeff.science at gmail.com
> >
> >
> > ------------------------------
> >
> > Message: 6
> > Date: Thu, 28 Nov 2013 04:44:29 +0000 (UTC)
> > From: soheil hooshdaran <shooshdaran577 at gmail.com>
> > To: <discuss at mpich.org>
> > Subject: [mpich-discuss] Check out my profile on LinkedIn
> > Message-ID:
> > <938321499.24579344.1385613869826.JavaMail.app at ela4-app4302.prod
> >
> > Content-Type: text/plain; charset="utf-8"
> >
> > LinkedIn
> > ------------
> >
> >
> >
> > I'd like to include you in my network to share updates and stay in touch.
> >
> > - soheil
> >
> > soheil hooshdaran
> > Translation and Localization Professional
> > Iran
> >
> > Confirm that you know soheil hooshdaran:
> >
> >
> https://www.linkedin.com/e/8cyp7l-hojiq0hf-5n/isd/18362465992/aAFZherL/?hs=false&tok=2E3kcJI6AYom01
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