[mpich-discuss] mpich2 installation fails

Tue Oct 22 11:55:24 CDT 2013

sir,i am sending my configuration file.plz help us urgently.

On Tue, Oct 22, 2013 at 7:43 PM, Ken Raffenetti <raffenet at mcs.anl.gov>wrote:

> Hi,
>
> Can you send us the output of your configure command, as well as the
> config.log file that was generated? Additionally, if you do not need the
> Fortran bindings for MPICH, you can try adding --disable-f77 and
> --disable-fc to your configure and see if your build completes then.
>
> Ken
>
> ----- Original Message -----
> > From: "bhimashankar dhappadhule" <dhappabn at gmail.com>
> > To: discuss at mpich.org
> > Sent: Tuesday, October 22, 2013 6:59:06 AM
> > Subject: [mpich-discuss] mpich2 installation fails
> >
> >
> >
> >
> >
> > sir ,
> > while installing mpich2 on ubuntu 13.04 ,configuration successfully
> > done but at time of command '' make ",i get error like shown in
> > attachment.I urgently required your help sir.
> > Thank you...! waiting for reply.
> >
> > _______________________________________________
> > discuss mailing list     discuss at mpich.org
> > To manage subscription options or unsubscribe:
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checking for __attribute__(malloc)... yes
checking for __attribute__(may_alias)... yes
checking for __attribute__(no_instrument_function)... yes
checking for __attribute__(nonnull)... yes
checking for __attribute__(noreturn)... yes
checking for __attribute__(packed)... yes
checking for __attribute__(pure)... yes
checking for __attribute__(sentinel)... yes
checking for __attribute__(unused)... yes
checking for __attribute__(warn_unused_result)... yes
checking for __attribute__(weak_alias)... yes
checking if cc supports -fvisibility=hidden... yes
checking whether to enable symbol visibility... yes (via -fvisibility=hidden)
configure: WARNING: "-fvisibility=hidden" has been added to the hwloc CFLAGS
checking whether the C compiler rejects function calls with too many arguments... yes
checking whether the C compiler rejects function calls with too few arguments... yes
checking for unistd.h... (cached) yes
checking dirent.h usability... yes
checking dirent.h presence... yes
checking for dirent.h... yes
checking for strings.h... (cached) yes
checking for strncasecmp... yes
checking whether function strncasecmp is declared... yes
checking for strftime... yes
checking for setlocale... yes
checking for stdint.h... (cached) yes
checking sys/mman.h usability... yes
checking sys/mman.h presence... yes
checking for sys/mman.h... yes
checking for KAFFINITY... no
checking for PROCESSOR_CACHE_TYPE... no
checking for CACHE_DESCRIPTOR... no
checking for LOGICAL_PROCESSOR_RELATIONSHIP... no
checking for RelationProcessorPackage... no
checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION... no
checking for GROUP_AFFINITY... no
checking for PROCESSOR_RELATIONSHIP... no
checking for NUMA_NODE_RELATIONSHIP... no
checking for CACHE_RELATIONSHIP... no
checking for PROCESSOR_GROUP_INFO... no
checking for GROUP_RELATIONSHIP... no
checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... no
checking for PSAPI_WORKING_SET_EX_BLOCK... no
checking for PSAPI_WORKING_SET_EX_INFORMATION... no
checking for main in -lgdi32... no
checking for windows.h... (cached) no
checking sys/lgrp_user.h usability... no
checking sys/lgrp_user.h presence... no
checking for sys/lgrp_user.h... no
checking kstat.h usability... no
checking kstat.h presence... no
checking for kstat.h... no
checking whether fabsf is declared... yes
checking for fabsf in -lm... yes
checking picl.h usability... no
checking picl.h presence... no
checking for picl.h... no
checking whether _SC_NPROCESSORS_ONLN is declared... yes
checking whether _SC_NPROCESSORS_CONF is declared... yes
checking whether _SC_NPROC_ONLN is declared... no
checking whether _SC_NPROC_CONF is declared... no
checking whether _SC_PAGESIZE is declared... yes
checking whether _SC_PAGE_SIZE is declared... yes
checking whether _SC_LARGE_PAGESIZE is declared... no
checking mach/mach_host.h usability... no
checking mach/mach_host.h presence... no
checking for mach/mach_host.h... no
checking mach/mach_init.h usability... no
checking mach/mach_init.h presence... no
checking for mach/mach_init.h... no
checking for sys/param.h... (cached) yes
checking for sys/sysctl.h... yes
checking whether CTL_HW is declared... no
checking whether HW_NCPU is declared... no
checking for sysctl... yes
checking for sysctlbyname... no
checking for pthread_t... yes
checking whether function sched_setaffinity is declared... yes
checking for old prototype of sched_setaffinity... no
checking for working CPU_SET... yes
checking for working CPU_SET_S... yes
checking for working _syscall3... no
checking for KERRIGHED... no
checking for lib... no
checking for bash... /bin/bash
checking for ffs... yes
checking whether function ffs is declared... yes
checking for ffsl... yes
checking whether function ffsl is declared... yes
checking for fls... no
checking for flsl... no
checking for clz... no
checking for clzl... no
checking for openat... yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking for getpagesize... yes
checking for memalign... yes
checking for posix_memalign... yes
checking whether getpagesize needs a declaration... no
checking sys/utsname.h usability... yes
checking sys/utsname.h presence... yes
checking for sys/utsname.h... yes
checking for uname... yes
checking pthread_np.h usability... no
checking pthread_np.h presence... no
checking for pthread_np.h... no
checking whether pthread_setaffinity_np is declared... yes
checking whether pthread_getaffinity_np is declared... yes
checking for sched_setaffinity... yes
checking for sys/cpuset.h... no
checking for cpuset_setaffinity... no
checking for library containing pthread_getthrds_np... no
checking for cpuset_setid... no
checking numaif.h usability... no
checking numaif.h presence... no
checking for numaif.h... no
checking for PCIACCESS... no
checking for PCI... no
checking pci/pci.h usability... no
checking pci/pci.h presence... no
checking for pci/pci.h... no
checking for LIBXML2... no
checking for cpuid... yes
checking for pthread_mutex_lock... yes
checking if plugin support is enabled... no
checking components to build statically...  noos xml synthetic custom xml_nolibxml linux x86
checking components to build as plugins... 
checking available processor topology libraries... hwloc
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for pthread_key_create in -lpthread... yes
checking checkpointing library... blcr
checking libcr.h usability... no
checking libcr.h presence... no
checking for libcr.h... no
checking for cr_init in -lcr... no
checking demux engine... poll,select,port
checking for poll... yes
checking for select... yes
checking debugging support... none
checking error checking... yes
checking warnings... no
checking profiling... yes
checking libftb.h usability... no
checking libftb.h presence... no
checking for libftb.h... no
checking for FTB_Connect in -lftb... no
checking for strsignal... (cached) yes
checking whether strsignal needs a declaration... no
checking for sigaction... (cached) yes
checking for signal... (cached) yes
checking for sigset... yes
checking for struct sigaction and sa_handler... yes
checking for gethostname... yes
checking whether gethostname needs a declaration... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating tools/topo/hwloc/hwloc/Makefile
config.status: creating tools/topo/hwloc/hwloc/include/Makefile
config.status: creating tools/topo/hwloc/hwloc/src/Makefile
config.status: creating Makefile
config.status: creating tools/bootstrap/src/bsci_init.c
config.status: creating hydra-doxygen.cfg
config.status: creating include/hydra_config.h
config.status: include/hydra_config.h is unchanged
config.status: creating tools/topo/hwloc/hwloc/include/private/autogen/config.h
config.status: tools/topo/hwloc/hwloc/include/private/autogen/config.h is unchanged
config.status: creating tools/topo/hwloc/hwloc/include/hwloc/autogen/config.h
config.status: tools/topo/hwloc/hwloc/include/hwloc/autogen/config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
configure: ===== done with src/pm/hydra configure =====
checking size of OPA_ptr_t... 4
checking the sizeof MPI_Offset... 8
checking whether the Fortran Offset type works with Fortran 77... yes
checking whether the Fortran Offset type works with Fortran 90... yes
checking for size of MPI_Status... 32
checking for BSD/POSIX style global symbol lister... BSD style,/usr/bin/nm -g -B
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for multiple __attribute__((alias)) support... yes
checking the minimum alignment of Fortran common block of 1 integers... 16
checking the minimum alignment of Fortran common block of 8 integers... 32
configure: creating ./config.lt
config.lt: creating libtool
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating src/binding/f90/mpif90model.h
config.status: creating src/mpid/ch3/channels/nemesis/include/mpid_nem_net_module_defs.h
config.status: creating src/mpid/ch3/channels/nemesis/src/mpid_nem_net_array.c
config.status: creating Makefile
config.status: creating examples/Makefile
config.status: creating test/Makefile
config.status: creating test/commands/Makefile
config.status: creating src/include/mpichinfo.h
config.status: creating mpich-doxygen
config.status: creating src/include/glue_romio.h
config.status: creating src/include/mpichtimer.h
config.status: creating src/binding/cxx/mpicxx.h
config.status: creating src/binding/f77/mpif.h
config.status: creating src/binding/f77/setbotf.f
config.status: creating src/binding/f77/setbot.c
config.status: creating src/binding/f90/mpi_sizeofs.f90
config.status: creating src/binding/f90/mpi_base.f90
config.status: creating src/packaging/pkgconfig/mpich.pc
config.status: creating src/packaging/envmods/mpich.module
config.status: WARNING:  'src/packaging/envmods/mpich.module.in' seems to ignore the --datarootdir setting
config.status: creating src/env/mpixxx_opts.conf
config.status: creating src/env/mpicc.sh
config.status: creating src/env/mpicc.conf
config.status: creating src/env/mpicc.bash
config.status: creating src/env/mpicxx.sh
config.status: creating src/env/mpicxx.conf
config.status: creating src/env/mpicxx.bash
config.status: creating src/env/mpif77.sh
config.status: creating src/env/mpif77.conf
config.status: creating src/env/mpif77.bash
config.status: creating src/env/mpif90.sh
config.status: creating src/env/mpif90.conf
config.status: creating src/env/mpif90.bash
config.status: creating src/env/parkill
config.status: creating src/util/dbg/getfuncstack
config.status: creating src/include/mpi.h
config.status: creating doc/design/Makefile
config.status: creating doc/installguide/Makefile
config.status: creating doc/logging/Makefile
config.status: creating doc/refman/Makefile
config.status: creating doc/smpd/Makefile
config.status: creating doc/userguide/Makefile
config.status: creating doc/windev/Makefile
config.status: creating test/commands/cmdtests
config.status: creating src/include/mpichconf.h
config.status: src/include/mpichconf.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing default-1 commands
config.status: executing default-2 commands
config.status: executing default-3 commands
config.status: executing default-4 commands
config.status: executing default-5 commands
=== configuring in test/mpi (/home/btech/Downloads/mpich-3.0.4/test/mpi)
configure: running /bin/bash ./configure --disable-option-checking '--prefix=/home/napalm/.mpich2'  --cache-file=/dev/null --srcdir=.
RUNNING CONFIGURE FOR MPI TESTS
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... yes
checking whether make supports nested variables... (cached) yes
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for style of include used by make... GNU
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking dependency style of cc... gcc3
checking whether long double is supported... yes
checking whether long long is supported... yes
checking for an ANSI C-conforming const... yes
checking for C/C++ restrict keyword... __restrict
checking for ranlib... ranlib
checking the archiver (ar) interface... ar
checking for grep that handles long lines and -e... /bin/grep
checking for fgrep... /bin/grep -F
checking how to run the C preprocessor... cc -E
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking sys/resource.h usability... yes
checking sys/resource.h presence... yes
checking for sys/resource.h... yes
checking for int8_t... yes
checking for int16_t... yes
checking for int32_t... yes
checking for int64_t... yes
checking for uint8_t... yes
checking for uint16_t... yes
checking for uint32_t... yes
checking for uint64_t... yes
checking for _Bool... yes
checking for float _Complex... yes
checking for double _Complex... yes
checking for long double _Complex... yes
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for library containing pthread_create... -lpthread
checking for library containing pthread_barrier_init... none required
checking for pthread_create... yes
checking for pthread_yield... yes
checking for pthread_barrier_init... yes
checking for pthread_barrier_wait... yes
checking whether struct hostent contains h_addr_list... yes
checking for getrusage... yes
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking whether integer*4 is supported... yes
checking whether integer*8 is supported... yes
checking whether integer*16 is supported... no
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking how to get verbose linking output from gfortran... -v
checking for Fortran 77 libraries of gfortran...  -L/usr/lib/gcc/i686-linux-gnu/4.7 -L/usr/lib/gcc/i686-linux-gnu/4.7/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/4.7/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/4.7/../../.. -lpthread -lgfortran -lm -lquadmath
checking for Fortran 77 name mangling... lower uscore
checking whether gfortran allows mismatched arguments... yes
checking for Fortran libraries needed for getarg... none needed
checking whether Fortran 77 supports Cray-style pointer... yes
checking for Fortran 77 compiler flag for Cray-style pointer... -fcray-pointer
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking for extension for Fortran 90 programs... f90
checking whether the Fortran 90 compiler (gfortran     ) works... yes
checking whether the Fortran 90 compiler (gfortran     ) is a cross-compiler... no
checking for Fortran flag needed to accept free-form source... none
checking whether Fortran 90 supports Cray-style pointer... yes
checking for Fortran 90 compiler flag for Cray-style pointer... -fcray-pointer
checking whether gfortran supports the Fortran 2003 routines to access the commandline... yes
checking for Fortran 90 module extension... mod
checking for Fortran 90 module include flag... -I
checking for Fortran 90 module output directory flag... -J
checking whether we are using the GNU C++ compiler... yes
checking whether c++ accepts -g... yes
checking dependency style of c++... gcc3
checking whether <iostream> available... yes
checking whether the compiler implements namespaces... yes
checking whether the compiler implements the namespace std... yes
checking whether MPI_2DOUBLE_COMPLEX is available... no
checking whether MPI_2COMPLEX is available... no
checking size of void *... 4
checking size of int... 4
checking size of long... 4
checking size of long long... 8
checking size of short... 2
checking for C integer type of address size... int
checking for perl... /usr/bin/perl
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating maint/testmerge
config.status: creating runtests
config.status: creating checktests
config.status: creating Makefile
config.status: creating basic/Makefile
config.status: creating attr/Makefile
config.status: creating util/Makefile
config.status: creating coll/Makefile
config.status: creating comm/Makefile
config.status: creating datatype/Makefile
config.status: creating errhan/Makefile
config.status: creating group/Makefile
config.status: creating info/Makefile
config.status: creating init/Makefile
config.status: creating pt2pt/Makefile
config.status: creating mpi_t/Makefile
config.status: creating rma/Makefile
config.status: creating spawn/Makefile
config.status: creating topo/Makefile
config.status: creating io/Makefile
config.status: creating f77/Makefile
config.status: creating f77/attr/Makefile
config.status: creating f77/attr/attraints.h
config.status: creating f77/pt2pt/attr1aints.h
config.status: creating f77/ext/add1size.h
config.status: creating f77/datatype/Makefile
config.status: creating f77/datatype/typeaints.h
config.status: creating f77/util/Makefile
config.status: creating f77/coll/Makefile
config.status: creating f77/comm/Makefile
config.status: creating f77/topo/Makefile
config.status: creating f77/init/Makefile
config.status: creating f77/rma/addsize.h
config.status: creating f77/pt2pt/Makefile
config.status: creating f77/info/Makefile
config.status: creating f77/spawn/Makefile
config.status: creating f77/spawn/testlist
config.status: creating f77/spawn/type1aint.h
config.status: creating f77/rma/Makefile
config.status: creating f77/ext/Makefile
config.status: creating f77/ext/testlist
config.status: creating f77/io/Makefile
config.status: creating f77/io/iooffset.h
config.status: creating f77/io/iodisp.h
config.status: creating f77/io/ioaint.h
config.status: creating f90/Makefile
config.status: creating f90/attr/Makefile
config.status: creating f90/datatype/Makefile
config.status: creating f90/f90types/Makefile
config.status: creating f90/util/Makefile
config.status: creating f90/coll/Makefile
config.status: creating f90/comm/Makefile
config.status: creating f90/topo/Makefile
config.status: creating f90/init/Makefile
config.status: creating f90/pt2pt/Makefile
config.status: creating f90/rma/Makefile
config.status: creating f90/info/Makefile
config.status: creating f90/spawn/Makefile
config.status: creating f90/spawn/testlist
config.status: creating f90/timer/Makefile
config.status: creating f90/ext/Makefile
config.status: creating f90/ext/testlist
config.status: creating f90/io/Makefile
config.status: creating f90/misc/Makefile
config.status: creating cxx/Makefile
config.status: creating cxx/util/Makefile
config.status: creating cxx/attr/Makefile
config.status: creating cxx/pt2pt/Makefile
config.status: creating cxx/comm/Makefile
config.status: creating cxx/coll/Makefile
config.status: creating cxx/errhan/Makefile
config.status: creating cxx/info/Makefile
config.status: creating cxx/datatype/Makefile
config.status: creating cxx/io/Makefile
config.status: creating cxx/init/Makefile
config.status: creating cxx/rma/Makefile
config.status: creating cxx/spawn/Makefile
config.status: creating threads/Makefile
config.status: creating threads/pt2pt/Makefile
config.status: creating threads/util/Makefile
config.status: creating threads/comm/Makefile
config.status: creating threads/init/Makefile
config.status: creating threads/spawn/Makefile
config.status: creating errors/Makefile
config.status: creating errors/attr/Makefile
config.status: creating errors/basic/Makefile
config.status: creating errors/coll/Makefile
config.status: creating errors/comm/Makefile
config.status: creating errors/datatype/Makefile
config.status: creating errors/faults/Makefile
config.status: creating errors/group/Makefile
config.status: creating errors/pt2pt/Makefile
config.status: creating errors/rma/Makefile
config.status: creating errors/spawn/Makefile
config.status: creating errors/topo/Makefile
config.status: creating errors/io/Makefile
config.status: creating errors/cxx/Makefile
config.status: creating errors/cxx/errhan/Makefile
config.status: creating errors/cxx/io/Makefile
config.status: creating errors/f77/Makefile
config.status: creating errors/f77/errhan/Makefile
config.status: creating errors/f77/errhan/addsize.h
config.status: creating errors/f77/errhan/iooffset.h
config.status: creating errors/f90/Makefile
config.status: creating errors/f90/errhan/Makefile
config.status: creating manual/Makefile
config.status: creating manual/manyconnect
config.status: creating manual/mpi_t/Makefile
config.status: creating perf/Makefile
config.status: creating testlist
config.status: creating cxx/testlist
config.status: creating f77/testlist
config.status: creating f90/testlist
config.status: creating threads/testlist
config.status: creating errors/testlist
config.status: creating errors/cxx/testlist
config.status: creating include/mpitestconf.h
config.status: include/mpitestconf.h is unchanged
config.status: executing depfiles commands
config.status: executing default-1 commands
config.status: executing default-2 commands
config.status: executing default-3 commands
Configuration completed.