[mpich-discuss] MPICH 3.1rc2 build error on Darwin.
Pavan Balaji
balaji at mcs.anl.gov
Mon Jan 13 22:28:08 CST 2014
Or from a nightly snapshot:
http://www.mpich.org/static/tarballs/nightly/master/mpich/
— Pavan
On Jan 13, 2014, at 10:26 PM, Kenneth Raffenetti <raffenet at mcs.anl.gov> wrote:
> There should already be a fix for this in the latest master branch in git. It will be included in rc3, but you can try building from git if you'd like.
>
> Ken
>
> On 01/13/2014 10:12 PM, Salmon, Rene wrote:
>>
>> Thanks for the replies. Here is a bit more info. I tried this with both mpich 3.1rc2 and mpich 3.0.4
>>
>> mpich 3.1rc2
>> ============
>> This seems to compile with out any error messages using gcc.
>> ./configure CC=gcc CXX=g++ F77=gfortran FC=gfortran --prefix=/opt/ilocal/ --enable-fc
>> make
>>
>> mpich 3.1rc2
>> =========
>> This fails. I have the output of make V=1 at the end of this email.
>> ./configure CC=icc CXX=icpc F77=ifort FC=ifort --prefix=/opt/ilocal/ --enable-fc
>> make
>>
>>
>> mpich 3.0.4
>> ===========
>> This seems to work with mpich 3.0.4. No error messages.
>> ./configure CC=icc CXX=icpc F77=ifort FC=ifort --prefix=/opt/ilocal/ --enable-fc
>> make
>>
>>
>>
>> Here is the output to make V=1 for mpich 3.2rc2 using intel compilers.
>> ================================
>>
>> In file included from ../src/include/mpi.h(2145),
>> from cpi.c(7):
>> ../src/include/mpio.h(227): warning #1787: alias definitions not supported on this platform; attribute ignored
>> int MPI_File_get_atomicity(MPI_File fh, int *flag) MPICH_ATTR_WEAK_ALIAS("PMPI_File_get_atomicity");
>> ^
>>
>> In file included from ../src/include/mpi.h(2145),
>> from cpi.c(7):
>> ../src/include/mpio.h(228): warning #1787: alias definitions not supported on this platform; attribute ignored
>> int MPI_File_sync(MPI_File fh) MPICH_ATTR_WEAK_ALIAS("PMPI_File_sync");
>> ^
>>
>> In file included from ../src/include/mpi.h(2145),
>> from cpi.c(7):
>> ../src/include/mpio.h(264): warning #1787: alias definitions not supported on this platform; attribute ignored
>> MPI_File MPI_File_f2c(MPI_Fint file) MPICH_ATTR_WEAK_ALIAS("PMPI_File_f2c");
>> ^
>>
>> In file included from ../src/include/mpi.h(2145),
>> from cpi.c(7):
>> ../src/include/mpio.h(265): warning #1787: alias definitions not supported on this platform; attribute ignored
>> MPI_Fint MPI_File_c2f(MPI_File file) MPICH_ATTR_WEAK_ALIAS("PMPI_File_c2f");
>> ^
>>
>> /bin/sh ../libtool --tag=CC --mode=link icc -O2 -L../lib -L/opt/ilocal/src/mpich-3.1rc2/src/mpl -L/opt/ilocal/src/mpich-3.1rc2/src/openpa/src -Wl,-flat_namespace -static -Wl,-flat_namespace -o cpi cpi.o -lm -lpthread -lmpich -lmpl -lopa -lopa -lmpl -lpthread
>> libtool: link: icc -O2 -Wl,-flat_namespace -Wl,-flat_namespace -o cpi cpi.o -L../lib -L/opt/ilocal/src/mpich-3.1rc2/src/mpl -L/opt/ilocal/src/mpich-3.1rc2/src/openpa/src -lm /opt/ilocal/src/mpich-3.1rc2/lib/.libs/libmpich.a /opt/ilocal/src/mpich-3.1rc2/src/openpa/src/.libs/libopa.a /opt/ilocal/src/mpich-3.1rc2/src/mpl/.libs/libmpl.a -lpthread
>> Undefined symbols for architecture x86_64:
>> "_MPI_Bcast", referenced from:
>> _main in cpi.o
>> "_MPI_Comm_rank", referenced from:
>> _main in cpi.o
>> "_MPI_Comm_size", referenced from:
>> _main in cpi.o
>> "_MPI_Finalize", referenced from:
>> _main in cpi.o
>> "_MPI_Get_processor_name", referenced from:
>> _main in cpi.o
>> "_MPI_Init", referenced from:
>> _main in cpi.o
>> "_MPI_Reduce", referenced from:
>> _main in cpi.o
>> "_MPI_Wtime", referenced from:
>> _main in cpi.o
>> ld: symbol(s) not found for architecture x86_64
>> make[2]: *** [cpi] Error 1
>> make[1]: *** [all-recursive] Error 1
>> make: *** [all] Error 2
>>
>>
>>
>>
>>
>>
>>
>> -----Original Message-----
>> From: discuss-bounces at mpich.org on behalf of Eric A. Borisch
>> Sent: Mon 1/13/2014 12:39 AM
>> To: discuss at mpich.org
>> Subject: [mpich-discuss] MPICH 3.1rc2 build error on Darwin.
>>
>> He's building with icc/ifort, so it's not being done via MacPorts. I don't think he even needs MP or Homebrew installed to build MPICH, just Intel's tools (and Xcode).
>>
>> Building with 'make V=1' (or configuring with --disable-silent-rules) will provide more insight into what is going on. If you do have MP or Homebrew installed, you can rule out most interaction by removing their locations (/opt/local/bin, or /usr/local/bin, respectively) from PATH.
>>
>> Jeff, I'm sorry to year you were unhappy with the (MP) tools. FWIW, it's been reworked to have a standardized MPICH version (with GCC's Fortan and the system's default C compiler) that is installed for use by any (macports-built) package that needs it.
>>
>> Thanks,
>> - Eric
>>
>> On Sunday, January 12, 2014, Jeff Hammond wrote:
>>
>>
>> Might be the MacPorts garbage that bit me a while back too. If GCC fails, I suggest wiping MacPorts and installing Homebrew and the associated toolchain.
>>
>> Jeff
>>
>> Sent from my iPhone
>>
>> > On Jan 12, 2014, at 7:58 PM, Rajeev Thakur <thakur at mcs.anl.gov> wrote:
>> >
>> > It sounds like a 32-bit, 64-bit incompatibility between some installed compilers/linker. Are you able to build with gcc?
>> >
>> >
>> >> On Jan 10, 2014, at 3:09 PM, "Salmon, Rene" <salmr0 at bp.com> wrote:
>> >>
>> >>
>> >> Hi,
>> >>
>> >> Just trying to build MPICH 3.1rc2 on a Mac. The build seems to work but fails while trying to compile the examples. This is using the intel compilers.
>> >>
>> >> ifort,icc version 14.0.0.074
>> >>
>> >> Here is the config line.
>> >> ./configure CC=icc CXX=icpc F77=ifort FC=ifort --enable-fc
>> >>
>> >>
>> >> error message.
>> >>
>> >> make[4]: Nothing to be done for `all'.
>> >> make[4]: Nothing to be done for `all-am'.
>> >> Making all in .
>> >> Making all in .
>> >> Making all in examples
>> >> CCLD cpi
>> >> Undefined symbols for architecture x86_64:
>> >> "_MPI_Bcast", referenced from:
>> >> _main in cpi.o
>> >> "_MPI_Comm_rank", referenced from:
>> >> _main in cpi.o
>> >> "_MPI_Comm_size", referenced from:
>> >> _main in cpi.o
>> >> "_MPI_Finalize", referenced from:
>> >> _main in cpi.o
>> >> "_MPI_Get_processor_name", referenced from:
>> >> _main in cpi.o
>> >> "_MPI_Init", referenced from:
>> >> _main in cpi.o
>> >> "_MPI_Reduce", referenced from:
>> >> _main in cpi.o
>> >> "_MPI_Wtime", referenced from:
>> >> _main in cpi.o
>> >> ld: symbol(s) not found for architecture x86_64
>> >> make[2]: *** [cpi] Error 1
>> >> make[1]: *** [all-recursive] Error 1
>> >> make: *** [all] Error 2
>> >>
>> >> Thank you.
>> >>
>> >> Rene
>> >> _______________________________________________
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--
Pavan Balaji
http://www.mcs.anl.gov/~balaji
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