[mpich-discuss] MPICH 3.1rc2 build error on Darwin.

Salmon, Rene salmr0 at bp.com
Wed Jan 15 09:27:39 CST 2014


 Just reporting that this is indeed fixed with the latest git or snapshot.

Thank you
Rene




-----Original Message-----
From: discuss-bounces at mpich.org on behalf of Pavan Balaji
Sent: Mon 1/13/2014 10:28 PM
To: discuss at mpich.org
Subject: Re: [mpich-discuss] MPICH 3.1rc2 build error on Darwin.
 

Or from a nightly snapshot:

http://www.mpich.org/static/tarballs/nightly/master/mpich/

  - Pavan

On Jan 13, 2014, at 10:26 PM, Kenneth Raffenetti <raffenet at mcs.anl.gov> wrote:

> There should already be a fix for this in the latest master branch in git. It will be included in rc3, but you can try building from git if you'd like.
> 
> Ken
> 
> On 01/13/2014 10:12 PM, Salmon, Rene wrote:
>> 
>> Thanks for the replies. Here is a bit more info.  I tried this with both mpich 3.1rc2 and mpich 3.0.4
>> 
>> mpich 3.1rc2
>> ============
>> This seems to compile with out any error messages using gcc.
>> ./configure CC=gcc CXX=g++ F77=gfortran FC=gfortran --prefix=/opt/ilocal/ --enable-fc
>> make
>> 
>> mpich 3.1rc2
>> =========
>> This fails. I have the output of make V=1 at the end of this email.
>> ./configure CC=icc CXX=icpc F77=ifort FC=ifort --prefix=/opt/ilocal/ --enable-fc
>> make
>> 
>> 
>> mpich 3.0.4
>> ===========
>> This seems to work with mpich 3.0.4. No error messages.
>> ./configure CC=icc CXX=icpc F77=ifort FC=ifort --prefix=/opt/ilocal/ --enable-fc
>> make
>> 
>> 
>> 
>> Here is the output to make V=1 for mpich 3.2rc2 using intel compilers.
>> ================================
>> 
>> In file included from ../src/include/mpi.h(2145),
>>                  from cpi.c(7):
>> ../src/include/mpio.h(227): warning #1787: alias definitions not supported on this platform; attribute ignored
>>   int MPI_File_get_atomicity(MPI_File fh, int *flag) MPICH_ATTR_WEAK_ALIAS("PMPI_File_get_atomicity");
>>                                                      ^
>> 
>> In file included from ../src/include/mpi.h(2145),
>>                  from cpi.c(7):
>> ../src/include/mpio.h(228): warning #1787: alias definitions not supported on this platform; attribute ignored
>>   int MPI_File_sync(MPI_File fh) MPICH_ATTR_WEAK_ALIAS("PMPI_File_sync");
>>                                  ^
>> 
>> In file included from ../src/include/mpi.h(2145),
>>                  from cpi.c(7):
>> ../src/include/mpio.h(264): warning #1787: alias definitions not supported on this platform; attribute ignored
>>   MPI_File MPI_File_f2c(MPI_Fint file) MPICH_ATTR_WEAK_ALIAS("PMPI_File_f2c");
>>                                        ^
>> 
>> In file included from ../src/include/mpi.h(2145),
>>                  from cpi.c(7):
>> ../src/include/mpio.h(265): warning #1787: alias definitions not supported on this platform; attribute ignored
>>   MPI_Fint MPI_File_c2f(MPI_File file) MPICH_ATTR_WEAK_ALIAS("PMPI_File_c2f");
>>                                        ^
>> 
>> /bin/sh ../libtool  --tag=CC   --mode=link icc  -O2 -L../lib -L/opt/ilocal/src/mpich-3.1rc2/src/mpl -L/opt/ilocal/src/mpich-3.1rc2/src/openpa/src -Wl,-flat_namespace -static -Wl,-flat_namespace -o cpi cpi.o -lm -lpthread    -lmpich -lmpl -lopa -lopa -lmpl  -lpthread
>> libtool: link: icc -O2 -Wl,-flat_namespace -Wl,-flat_namespace -o cpi cpi.o  -L../lib -L/opt/ilocal/src/mpich-3.1rc2/src/mpl -L/opt/ilocal/src/mpich-3.1rc2/src/openpa/src -lm /opt/ilocal/src/mpich-3.1rc2/lib/.libs/libmpich.a /opt/ilocal/src/mpich-3.1rc2/src/openpa/src/.libs/libopa.a /opt/ilocal/src/mpich-3.1rc2/src/mpl/.libs/libmpl.a -lpthread
>> Undefined symbols for architecture x86_64:
>>   "_MPI_Bcast", referenced from:
>>       _main in cpi.o
>>   "_MPI_Comm_rank", referenced from:
>>       _main in cpi.o
>>   "_MPI_Comm_size", referenced from:
>>       _main in cpi.o
>>   "_MPI_Finalize", referenced from:
>>       _main in cpi.o
>>   "_MPI_Get_processor_name", referenced from:
>>       _main in cpi.o
>>   "_MPI_Init", referenced from:
>>       _main in cpi.o
>>   "_MPI_Reduce", referenced from:
>>       _main in cpi.o
>>   "_MPI_Wtime", referenced from:
>>       _main in cpi.o
>> ld: symbol(s) not found for architecture x86_64
>> make[2]: *** [cpi] Error 1
>> make[1]: *** [all-recursive] Error 1
>> make: *** [all] Error 2
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> -----Original Message-----
>> From: discuss-bounces at mpich.org on behalf of Eric A. Borisch
>> Sent: Mon 1/13/2014 12:39 AM
>> To: discuss at mpich.org
>> Subject: [mpich-discuss]  MPICH 3.1rc2 build error on Darwin.
>> 
>> He's building with icc/ifort, so it's not being done via MacPorts. I don't think he even needs MP or Homebrew installed to build MPICH, just Intel's tools (and Xcode).
>> 
>> Building with 'make V=1' (or configuring with --disable-silent-rules) will provide more insight into what is going on. If you do have MP or Homebrew installed, you can rule out most interaction by removing their locations (/opt/local/bin, or /usr/local/bin, respectively) from PATH.
>> 
>> Jeff, I'm sorry to year you were unhappy with the (MP) tools. FWIW, it's been reworked to have a standardized MPICH version (with GCC's Fortan and the system's default C compiler) that is installed for use by any (macports-built) package that needs it.
>> 
>> Thanks,
>>   - Eric
>> 
>> On Sunday, January 12, 2014, Jeff Hammond wrote:
>> 
>> 
>>         Might be the MacPorts garbage that bit me a while back too. If GCC fails, I suggest wiping MacPorts and installing Homebrew and the associated toolchain.
>> 
>>         Jeff
>> 
>>         Sent from my iPhone
>> 
>>         > On Jan 12, 2014, at 7:58 PM, Rajeev Thakur <thakur at mcs.anl.gov> wrote:
>>         >
>>         > It sounds like a 32-bit, 64-bit incompatibility between some installed compilers/linker. Are you able to build with gcc?
>>         >
>>         >
>>         >> On Jan 10, 2014, at 3:09 PM, "Salmon, Rene" <salmr0 at bp.com> wrote:
>>         >>
>>         >>
>>         >> Hi,
>>         >>
>>         >> Just trying to build MPICH 3.1rc2 on a Mac. The build seems to work but fails while trying to compile the examples. This is using the intel compilers.
>>         >>
>>         >> ifort,icc version 14.0.0.074
>>         >>
>>         >> Here is the config line.
>>         >> ./configure CC=icc CXX=icpc F77=ifort FC=ifort   --enable-fc
>>         >>
>>         >>
>>         >> error message.
>>         >>
>>         >> make[4]: Nothing to be done for `all'.
>>         >> make[4]: Nothing to be done for `all-am'.
>>         >> Making all in .
>>         >> Making all in .
>>         >> Making all in examples
>>         >> CCLD     cpi
>>         >> Undefined symbols for architecture x86_64:
>>         >> "_MPI_Bcast", referenced from:
>>         >>     _main in cpi.o
>>         >> "_MPI_Comm_rank", referenced from:
>>         >>     _main in cpi.o
>>         >> "_MPI_Comm_size", referenced from:
>>         >>     _main in cpi.o
>>         >> "_MPI_Finalize", referenced from:
>>         >>     _main in cpi.o
>>         >> "_MPI_Get_processor_name", referenced from:
>>         >>     _main in cpi.o
>>         >> "_MPI_Init", referenced from:
>>         >>     _main in cpi.o
>>         >> "_MPI_Reduce", referenced from:
>>         >>     _main in cpi.o
>>         >> "_MPI_Wtime", referenced from:
>>         >>     _main in cpi.o
>>         >> ld: symbol(s) not found for architecture x86_64
>>         >> make[2]: *** [cpi] Error 1
>>         >> make[1]: *** [all-recursive] Error 1
>>         >> make: *** [all] Error 2
>>         >>
>>         >> Thank you.
>>         >>
>>         >> Rene
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--
Pavan Balaji
http://www.mcs.anl.gov/~balaji

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