[mpich-discuss] A problem in running mpi code on ubuntu 13.10

ehsan saei ehsan.saei at gmail.com
Tue Jan 28 11:22:58 CST 2014


Thank you very much. It solved my problem.


On Tue, Jan 28, 2014 at 6:18 PM, Kenneth Raffenetti <raffenet at mcs.anl.gov>wrote:

> Oh, looks like the "mpi" alternative doesn't actually update the mpiexec
> link. Try running this:
>
>   sudo update-alternatives --set mpirun /usr/bin/mpirun.mpich2
>
>
> On 01/28/2014 11:11 AM, ehsan saei wrote:
>
>> here is the result:
>> /etc/alternatives/mpicxx ->/usr/bin/mpicxx.mpich2
>> /etc/alternatives/mpiexec ->/usr/bin/mpiexec.openmpi
>>
>>
>> On Tue, Jan 28, 2014 at 5:58 PM, Kenneth Raffenetti
>> <raffenet at mcs.anl.gov <mailto:raffenet at mcs.anl.gov>> wrote:
>>
>>     To double check that the alternatives system did the right thing,
>>     can you can check the output of these commands and send us the
>> results?
>>
>>        ls -l /etc/alternatives/mpicxx
>>        ls -l /etc/alternatives/mpiexec
>>
>>
>>     On 01/28/2014 10:42 AM, ehsan saei wrote:
>>
>>         Yes I recompiled but the result is the same as before.
>>
>>
>>         On Tue, Jan 28, 2014 at 5:36 PM, Kenneth Raffenetti
>>         <raffenet at mcs.anl.gov <mailto:raffenet at mcs.anl.gov>
>>         <mailto:raffenet at mcs.anl.gov <mailto:raffenet at mcs.anl.gov>>>
>> wrote:
>>
>>              Just making sure, you recompiled your program with mpicxx
>>         before
>>              running it again?
>>
>>
>>              On 01/28/2014 10:30 AM, ehsan saei wrote:
>>
>>                  Thanks but, still the same result
>>
>>
>>                  On Tue, Jan 28, 2014 at 5:20 PM, Kenneth Raffenetti
>>                  <raffenet at mcs.anl.gov <mailto:raffenet at mcs.anl.gov>
>>         <mailto:raffenet at mcs.anl.gov <mailto:raffenet at mcs.anl.gov>>
>>                  <mailto:raffenet at mcs.anl.gov
>>         <mailto:raffenet at mcs.anl.gov> <mailto:raffenet at mcs.anl.gov
>>         <mailto:raffenet at mcs.anl.gov>>>__> wrote:
>>
>>                       Try running 'sudo update-alternatives --set mpi
>>                       /usr/include/mpich2'. This tells the Ubuntu
>>         alternatives
>>                  system to
>>                       use mpich2 by default.
>>
>>                       Ken
>>
>>
>>                       On 01/28/2014 10:15 AM, ehsan saei wrote:
>>
>>                           Yes you are right. I have both of them. Now
>>         what is the
>>                  solution for
>>                           this machine?
>>
>>
>>                           On Tue, Jan 28, 2014 at 4:23 PM, Kenneth
>>         Raffenetti
>>                           <raffenet at mcs.anl.gov
>>         <mailto:raffenet at mcs.anl.gov> <mailto:raffenet at mcs.anl.gov
>>         <mailto:raffenet at mcs.anl.gov>>
>>                  <mailto:raffenet at mcs.anl.gov
>>         <mailto:raffenet at mcs.anl.gov> <mailto:raffenet at mcs.anl.gov
>>         <mailto:raffenet at mcs.anl.gov>>>
>>                           <mailto:raffenet at mcs.anl.gov
>>         <mailto:raffenet at mcs.anl.gov>
>>                  <mailto:raffenet at mcs.anl.gov
>>         <mailto:raffenet at mcs.anl.gov>> <mailto:raffenet at mcs.anl.gov
>>         <mailto:raffenet at mcs.anl.gov>
>>                  <mailto:raffenet at mcs.anl.gov
>>         <mailto:raffenet at mcs.anl.gov>>>__>__> wrote:
>>
>>                                This problem usually comes from having a
>>         mix of
>>                  openmpi and
>>                           mpich
>>                                both installed on the same machine. Is
>>         that the
>>                  case? You
>>                           can search
>>                                for openmpi by running something like
>>         this from
>>                  the command
>>                           line:
>>
>>                                   dpkg -l | grep openmpi
>>
>>
>>                                On 01/28/2014 08:50 AM, ehsan saei wrote:
>>
>>                                    for size the output is 1 independent
>>         from the
>>                  number of
>>                                    processed that I
>>                                    declare with "mpiexec -n ..."
>>
>>
>>                                    On Tue, Jan 28, 2014 at 3:12 PM, Reuti
>>                                    <reuti at staff.uni-marburg.de
>>         <mailto:reuti at staff.uni-marburg.de>
>>                  <mailto:reuti at staff.uni-__marburg.de
>>         <mailto:reuti at staff.uni-marburg.de>>
>>                           <mailto:reuti at staff.uni-____marburg.de
>>         <mailto:reuti at staff.uni-__marburg.de>
>>                  <mailto:reuti at staff.uni-__marburg.de
>>         <mailto:reuti at staff.uni-marburg.de>>>
>>                           <mailto:reuti at staff.uni-______marburg.de
>>         <mailto:reuti at staff.uni-____marburg.de>
>>                  <mailto:reuti at staff.uni-____marburg.de
>>         <mailto:reuti at staff.uni-__marburg.de>>
>>                           <mailto:reuti at staff.uni-____marburg.de
>>         <mailto:reuti at staff.uni-__marburg.de>
>>                  <mailto:reuti at staff.uni-__marburg.de
>>         <mailto:reuti at staff.uni-marburg.de>>>>
>>
>>         <mailto:reuti at staff.uni-________marburg.de
>>         <mailto:reuti at staff.uni-______marburg.de>
>>
>>                  <mailto:reuti at staff.uni-______marburg.de
>>         <mailto:reuti at staff.uni-____marburg.de>>
>>
>>                           <mailto:reuti at staff.uni-______marburg.de
>>         <mailto:reuti at staff.uni-____marburg.de>
>>                  <mailto:reuti at staff.uni-____marburg.de
>>         <mailto:reuti at staff.uni-__marburg.de>>>
>>
>>
>>
>>         <mailto:reuti at staff.uni-______marburg.de
>>         <mailto:reuti at staff.uni-____marburg.de>
>>                  <mailto:reuti at staff.uni-____marburg.de
>>         <mailto:reuti at staff.uni-__marburg.de>>
>>                           <mailto:reuti at staff.uni-____marburg.de
>>         <mailto:reuti at staff.uni-__marburg.de>
>>                  <mailto:reuti at staff.uni-__marburg.de
>>         <mailto:reuti at staff.uni-marburg.de>>>>>> wrote:
>>
>>                                         Am 28.01.2014 um 11:18 schrieb
>>         ehsan saei:
>>
>>                                          > I still have the problem with
>> mpi
>>
>>                                         In the program you cited you
>>         don't output the
>>                           size. Can you
>>                                    output
>>                                         the size in addition?
>>
>>                                         -- Reuti
>>
>>
>>
>>                                          > On Mon, Jan 27, 2014 at 4:47
>>         PM, ehsan
>>                  saei
>>                                    <ehsan.saei at gmail.com
>>         <mailto:ehsan.saei at gmail.com>
>>                  <mailto:ehsan.saei at gmail.com
>>         <mailto:ehsan.saei at gmail.com>> <mailto:ehsan.saei at gmail.com
>>         <mailto:ehsan.saei at gmail.com>
>>                  <mailto:ehsan.saei at gmail.com
>>         <mailto:ehsan.saei at gmail.com>>>
>>                           <mailto:ehsan.saei at gmail.com
>>         <mailto:ehsan.saei at gmail.com>
>>                  <mailto:ehsan.saei at gmail.com
>>         <mailto:ehsan.saei at gmail.com>> <mailto:ehsan.saei at gmail.com
>>         <mailto:ehsan.saei at gmail.com>
>>                  <mailto:ehsan.saei at gmail.com
>>         <mailto:ehsan.saei at gmail.com>>>__>
>>                                         <mailto:ehsan.saei at gmail.com
>>         <mailto:ehsan.saei at gmail.com>
>>                  <mailto:ehsan.saei at gmail.com <mailto:
>> ehsan.saei at gmail.com>>
>>                           <mailto:ehsan.saei at gmail.com
>>         <mailto:ehsan.saei at gmail.com> <mailto:ehsan.saei at gmail.com
>>         <mailto:ehsan.saei at gmail.com>>>
>>
>>                                    <mailto:ehsan.saei at gmail.com
>>         <mailto:ehsan.saei at gmail.com>
>>                  <mailto:ehsan.saei at gmail.com <mailto:
>> ehsan.saei at gmail.com>>
>>                           <mailto:ehsan.saei at gmail.com
>>         <mailto:ehsan.saei at gmail.com>
>>                  <mailto:ehsan.saei at gmail.com
>>         <mailto:ehsan.saei at gmail.com>>>__>__>__> wrote:
>>                                          > which mpicxx returns:
>>         /usr/bin/mpicxx
>>                                          >
>>                                          >
>>                                          > On Mon, Jan 27, 2014 at 4:44
>>         PM, Reuti
>>                                         <reuti at staff.uni-marburg.de
>>         <mailto:reuti at staff.uni-marburg.de>
>>                  <mailto:reuti at staff.uni-__marburg.de
>>         <mailto:reuti at staff.uni-marburg.de>>
>>                           <mailto:reuti at staff.uni-____marburg.de
>>         <mailto:reuti at staff.uni-__marburg.de>
>>                  <mailto:reuti at staff.uni-__marburg.de
>>         <mailto:reuti at staff.uni-marburg.de>>>
>>
>>         <mailto:reuti at staff.uni-______marburg.de
>>         <mailto:reuti at staff.uni-____marburg.de>
>>                  <mailto:reuti at staff.uni-____marburg.de
>>         <mailto:reuti at staff.uni-__marburg.de>>
>>                           <mailto:reuti at staff.uni-____marburg.de
>>         <mailto:reuti at staff.uni-__marburg.de>
>>                  <mailto:reuti at staff.uni-__marburg.de
>>         <mailto:reuti at staff.uni-marburg.de>>>>
>>
>>         <mailto:reuti at staff.uni-________marburg.de
>>         <mailto:reuti at staff.uni-______marburg.de>
>>
>>                  <mailto:reuti at staff.uni-______marburg.de
>>         <mailto:reuti at staff.uni-____marburg.de>>
>>                           <mailto:reuti at staff.uni-______marburg.de
>>         <mailto:reuti at staff.uni-____marburg.de>
>>                  <mailto:reuti at staff.uni-____marburg.de
>>         <mailto:reuti at staff.uni-__marburg.de>>>
>>
>>
>>
>>         <mailto:reuti at staff.uni-______marburg.de
>>         <mailto:reuti at staff.uni-____marburg.de>
>>                  <mailto:reuti at staff.uni-____marburg.de
>>         <mailto:reuti at staff.uni-__marburg.de>>
>>                           <mailto:reuti at staff.uni-____marburg.de
>>         <mailto:reuti at staff.uni-__marburg.de>
>>                  <mailto:reuti at staff.uni-__marburg.de
>>         <mailto:reuti at staff.uni-marburg.de>>>>>> wrote:
>>                                          > Am 27.01.2014 um 16:41
>>         schrieb ehsan saei:
>>                                          >
>>                                          > > I compile the code with:
>>           mpicxx
>>                  main.cpp
>>                                          > > and run it with: mpiexec -n
>>         8 ./a.out
>>                                          >
>>                                          > Does `which mpicxx` resp.
>> `which
>>                  mpiexec` point
>>                           to the
>>                                    intended
>>                                         target?
>>                                          >
>>                                          > -- Reuti
>>                                          >
>>                                          >
>>                                          > > I use a single computer
>>         with dual
>>                  core core i3
>>                                          > >
>>                                          > >
>>                                          > > On Mon, Jan 27, 2014 at
>>         4:39 PM,
>>                  Wesley Bland
>>                                         <wbland at mcs.anl.gov
>>         <mailto:wbland at mcs.anl.gov>
>>                  <mailto:wbland at mcs.anl.gov <mailto:wbland at mcs.anl.gov>>
>>         <mailto:wbland at mcs.anl.gov <mailto:wbland at mcs.anl.gov>
>>                  <mailto:wbland at mcs.anl.gov <mailto:wbland at mcs.anl.gov>>>
>>                           <mailto:wbland at mcs.anl.gov
>>         <mailto:wbland at mcs.anl.gov> <mailto:wbland at mcs.anl.gov
>>         <mailto:wbland at mcs.anl.gov>>
>>                  <mailto:wbland at mcs.anl.gov <mailto:wbland at mcs.anl.gov>
>>         <mailto:wbland at mcs.anl.gov <mailto:wbland at mcs.anl.gov>>>>
>>                                    <mailto:wbland at mcs.anl.gov
>>         <mailto:wbland at mcs.anl.gov>
>>                  <mailto:wbland at mcs.anl.gov <mailto:wbland at mcs.anl.gov>>
>>         <mailto:wbland at mcs.anl.gov <mailto:wbland at mcs.anl.gov>
>>                  <mailto:wbland at mcs.anl.gov <mailto:wbland at mcs.anl.gov>>>
>>                           <mailto:wbland at mcs.anl.gov
>>         <mailto:wbland at mcs.anl.gov> <mailto:wbland at mcs.anl.gov
>>         <mailto:wbland at mcs.anl.gov>>
>>                  <mailto:wbland at mcs.anl.gov <mailto:wbland at mcs.anl.gov>
>>         <mailto:wbland at mcs.anl.gov <mailto:wbland at mcs.anl.gov>>>>>__>
>> wrote:
>>                                          > > The code is fine. The
>>         problem is
>>                  most likely
>>                           either
>>                                    the way
>>                                         you're executing your code or
>>         the way you
>>                           installed it. Can
>>                                    you tell
>>                                         us how you executed in on the
>>         command
>>                  line to start?
>>                                          > >
>>                                          > > Thanks,
>>                                          > > Wesley
>>                                          > >
>>                                          > >
>>                                          > >
>>                                          > >
>>
>>           _______________________________________________________
>>
>>
>>
>>                                          > > discuss mailing list
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>>
>>
>>
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>>                                          > >
>>                                          > >
>>
>>           _______________________________________________________
>>
>>
>>
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>>                                          >
>>                                          >
>>                  _______________________________________________________
>>
>>
>>
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>>                                          >
>>                  _______________________________________________________
>>
>>
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>>
>>                  _______________________________________________________
>>
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