[mpich-discuss] trouble installing

Wed Oct 29 23:50:02 CDT 2014

I am having trouble installing mpich on my macbook pro.

This is what my terminal window looks like when I try to install it at get
stuck at the make part.

What am I doing wrong?

Last login: Wed Oct 29 22:36:42 on ttys000

Michaels-MacBook-Pro:~ michael-steffen$ cd
/Users/michael-steffen/Desktop/mpich-3.1.3

Michaels-MacBook-Pro:mpich-3.1.3 michael-steffen$
/Users/michael-steffen/Desktop/mpich-3.1.3/configure

Configuring MPICH version 3.1.3

Running on system: Darwin Michaels-MacBook-Pro.local 13.4.0 Darwin Kernel
Version 13.4.0: Sun Aug 17 19:50:11 PDT 2014;
root:xnu-2422.115.4~1/RELEASE_X86_64 x86_64

checking for icc... no

checking for pgcc... no

checking for xlc... no

checking for xlC... no

checking for pathcc... no

checking for gcc... gcc

checking whether the C compiler works... yes

checking for C compiler default output file name... a.out

checking for suffix of executables...

checking whether we are cross compiling... no

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking whether gcc understands -c and -o together... yes

checking how to run the C preprocessor... gcc -E

checking for a BSD-compatible install... /usr/bin/install -c

checking whether build environment is sane... yes

checking for a thread-safe mkdir -p... confdb/install-sh -c -d

checking for gawk... no

checking for mawk... no

checking for nawk... no

checking for awk... awk

checking whether make sets $(MAKE)... yes

checking for style of include used by make... GNU

checking whether make supports nested variables... yes

checking dependency style of gcc... gcc3

checking whether to enable maintainer-specific portions of Makefiles... yes

checking for ar... ar

checking the archiver (ar) interface... ar

checking build system type... x86_64-apple-darwin13.4.0

checking host system type... x86_64-apple-darwin13.4.0

checking how to print strings... printf

checking for a sed that does not truncate output... /usr/bin/sed

checking for grep that handles long lines and -e... /usr/bin/grep

checking for egrep... /usr/bin/grep -E

checking for fgrep... /usr/bin/grep -F

checking for ld used by gcc...
/Library/Developer/CommandLineTools/usr/bin/ld

checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is
GNU ld... no

checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm

checking the name lister (/usr/bin/nm) interface... BSD nm

checking whether ln -s works... yes

checking the maximum length of command line arguments... 196608

checking whether the shell understands some XSI constructs... yes

checking whether the shell understands "+="... yes

checking how to convert x86_64-apple-darwin13.4.0 file names to
x86_64-apple-darwin13.4.0 format... func_convert_file_noop

checking how to convert x86_64-apple-darwin13.4.0 file names to toolchain
format... func_convert_file_noop

checking for /Library/Developer/CommandLineTools/usr/bin/ld option to
reload object files... -r

checking for objdump... no

checking how to recognize dependent libraries... pass_all

checking for dlltool... no

checking how to associate runtime and link libraries... printf %s\n

checking for archiver @FILE support... no

checking for strip... strip

checking for ranlib... ranlib

checking command to parse /usr/bin/nm output from gcc object... ok

checking for sysroot... no

checking for mt... no

checking if : is a manifest tool... no

checking for dsymutil... dsymutil

checking for nmedit... nmedit

checking for lipo... lipo

checking for otool... otool

checking for otool64... no

checking for -single_module linker flag... yes

checking for -exported_symbols_list linker flag... yes

checking for -force_load linker flag... yes

checking for ANSI C header files... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking for dlfcn.h... yes

checking for objdir... .libs

checking if gcc supports -fno-rtti -fno-exceptions... yes

checking for gcc option to produce PIC... -fno-common -DPIC

checking if gcc PIC flag -fno-common -DPIC works... yes

checking if gcc static flag -static works... no

checking if gcc supports -c -o file.o... yes

checking if gcc supports -c -o file.o... (cached) yes

checking whether the gcc linker
(/Library/Developer/CommandLineTools/usr/bin/ld) supports shared
libraries... yes

checking dynamic linker characteristics... darwin13.4.0 dyld

checking how to hardcode library paths into programs... immediate

checking whether stripping libraries is possible... yes

checking if libtool supports shared libraries... yes

checking whether to build shared libraries... yes

checking whether to build static libraries... yes

checking whether make supports nested variables... (cached) yes

checking for icpc... no

checking for pgCC... no

checking for xlC... no

checking for pathCC... no

checking for g++... g++

checking whether we are using the GNU C++ compiler... yes

checking whether g++ accepts -g... yes

checking dependency style of g++... gcc3

checking how to run the C++ preprocessor... g++ -E

checking for ld used by g++...
/Library/Developer/CommandLineTools/usr/bin/ld

checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is
GNU ld... no

checking whether the g++ linker
(/Library/Developer/CommandLineTools/usr/bin/ld) supports shared
libraries... yes

checking for g++ option to produce PIC... -fno-common -DPIC

checking if g++ PIC flag -fno-common -DPIC works... yes

checking if g++ static flag -static works... no

checking if g++ supports -c -o file.o... yes

checking if g++ supports -c -o file.o... (cached) yes

checking whether the g++ linker
(/Library/Developer/CommandLineTools/usr/bin/ld) supports shared
libraries... yes

checking dynamic linker characteristics... darwin13.4.0 dyld

checking how to hardcode library paths into programs... immediate

checking for ifort... no

checking for pgf90... no

checking for pathf90... no

checking for pathf95... no

checking for xlf90... no

checking for xlf95... no

checking for xlf2003... no

checking for gfortran... no

checking for f90... no

checking for epcf90... no

checking for f95... no

checking for fort... no

checking for lf95... no

checking for g95... no

checking for ifc... no

checking for efc... no

checking for gfc... no

checking whether we are using the GNU Fortran compiler... no

checking whether  accepts -g... no

checking for ifort... no

checking for pgf77... no

checking for af77... no

checking for xlf... no

checking for frt... no

checking for cf77... no

checking for fort77... no

checking for fl32... no

checking for fort... no

checking for ifc... no

checking for efc... no

checking for ftn... no

checking for gfortran... no

checking for f77... no

checking for g77... no

checking whether we are using the GNU Fortran 77 compiler... no

checking whether  accepts -g... no

checking hcoll/api/hcoll_api.h usability... no

checking hcoll/api/hcoll_api.h presence... no

checking for hcoll/api/hcoll_api.h... no

checking for hcoll_init in -lhcoll... no

configure: RUNNING PREREQ FOR ch3:nemesis

checking for getpagesize... yes

checking for getpagesize... (cached) yes

configure: ===== configuring src/mpl =====

configure: running /bin/sh ./configure --disable-option-checking
'--prefix=NONE'  --cache-file=/dev/null --srcdir=.

checking for a BSD-compatible install... /usr/bin/install -c

checking whether build environment is sane... yes

checking for a thread-safe mkdir -p... confdb/install-sh -c -d

checking for gawk... no

checking for mawk... no

checking for nawk... no

checking for awk... awk

checking whether make sets $(MAKE)... yes

checking whether make supports nested variables... yes

checking for style of include used by make... GNU

checking whether the C compiler works... yes

checking for C compiler default output file name... a.out

checking for suffix of executables...

checking whether we are cross compiling... no

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking whether gcc understands -c and -o together... yes

checking dependency style of gcc... gcc3

checking the archiver (ar) interface... ar

checking build system type... x86_64-apple-darwin13.4.0

checking host system type... x86_64-apple-darwin13.4.0

checking how to print strings... printf

checking for a sed that does not truncate output... /usr/bin/sed

checking for grep that handles long lines and -e... /usr/bin/grep

checking for egrep... /usr/bin/grep -E

checking for fgrep... /usr/bin/grep -F

checking for ld used by gcc...
/Library/Developer/CommandLineTools/usr/bin/ld

checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is
GNU ld... no

checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm

checking the name lister (/usr/bin/nm) interface... BSD nm

checking whether ln -s works... yes

checking the maximum length of command line arguments... 196608

checking whether the shell understands some XSI constructs... yes

checking whether the shell understands "+="... yes

checking how to convert x86_64-apple-darwin13.4.0 file names to
x86_64-apple-darwin13.4.0 format... func_convert_file_noop

checking how to convert x86_64-apple-darwin13.4.0 file names to toolchain
format... func_convert_file_noop

checking for /Library/Developer/CommandLineTools/usr/bin/ld option to
reload object files... -r

checking for objdump... no

checking how to recognize dependent libraries... pass_all

checking for dlltool... no

checking how to associate runtime and link libraries... printf %s\n

checking for archiver @FILE support... no

checking for strip... strip

checking for ranlib... ranlib

checking command to parse /usr/bin/nm output from gcc object... ok

checking for sysroot... no

checking for mt... no

checking if : is a manifest tool... no

checking for dsymutil... dsymutil

checking for nmedit... nmedit

checking for lipo... lipo

checking for otool... otool

checking for otool64... no

checking for -single_module linker flag... yes

checking for -exported_symbols_list linker flag... yes

checking for -force_load linker flag... yes

checking how to run the C preprocessor... gcc -E

checking for ANSI C header files... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking for dlfcn.h... yes

checking for objdir... .libs

checking if gcc supports -fno-rtti -fno-exceptions... yes

checking for gcc option to produce PIC... -fno-common -DPIC

checking if gcc PIC flag -fno-common -DPIC works... yes

checking if gcc static flag -static works... no

checking if gcc supports -c -o file.o... yes

checking if gcc supports -c -o file.o... (cached) yes

checking whether the gcc linker
(/Library/Developer/CommandLineTools/usr/bin/ld) supports shared
libraries... yes

checking dynamic linker characteristics... darwin13.4.0 dyld

checking how to hardcode library paths into programs... immediate

checking whether stripping libraries is possible... yes

checking if libtool supports shared libraries... yes

checking whether to build shared libraries... yes

checking whether to build static libraries... yes

checking whether make supports nested variables... (cached) yes

checking for an ANSI C-conforming const... yes

checking for C/C++ restrict keyword... __restrict

checking for inline... inline

checking for variable argument list macro functionality... yes

checking for gcov... gcov

checking whether the compiler supports __typeof(variable)... yes

checking stdio.h usability... yes

checking stdio.h presence... yes

checking for stdio.h... yes

checking for stdlib.h... (cached) yes

checking for string.h... (cached) yes

checking stdarg.h usability... yes

checking stdarg.h presence... yes

checking for stdarg.h... yes

checking ctype.h usability... yes

checking ctype.h presence... yes

checking for ctype.h... yes

checking search.h usability... yes

checking search.h presence... yes

checking for search.h... yes

checking for sys/types.h... (cached) yes

checking sys/uio.h usability... yes

checking sys/uio.h presence... yes

checking for sys/uio.h... yes

checking for inttypes.h... (cached) yes

checking for stdint.h... (cached) yes

checking valgrind.h usability... no

checking valgrind.h presence... no

checking for valgrind.h... no

checking memcheck.h usability... no

checking memcheck.h presence... no

checking for memcheck.h... no

checking valgrind/valgrind.h usability... no

checking valgrind/valgrind.h presence... no

checking for valgrind/valgrind.h... no

checking valgrind/memcheck.h usability... no

checking valgrind/memcheck.h presence... no

checking for valgrind/memcheck.h... no

checking helgrind.h usability... no

checking helgrind.h presence... no

checking for helgrind.h... no

checking valgrind/helgrind.h usability... no

checking valgrind/helgrind.h presence... no

checking for valgrind/helgrind.h... no

checking drd.h usability... no

checking drd.h presence... no

checking for drd.h... no

checking valgrind/drd.h usability... no

checking valgrind/drd.h presence... no

checking for valgrind/drd.h... no

checking whether the valgrind headers are broken or too old... yes

checking for strdup... yes

checking whether strdup needs a declaration... no

checking for snprintf... yes

checking whether snprintf needs a declaration... no

checking for strncmp... yes

checking whether strncmp needs a declaration... no

checking for putenv... yes

checking whether putenv needs a declaration... no

checking whether __attribute__ allowed... yes

checking whether __attribute__((format)) allowed... yes

checking that generated files are newer than configure... done

configure: creating ./config.status

config.status: creating Makefile

config.status: creating localdefs

config.status: creating include/config.h

config.status: executing depfiles commands

config.status: executing libtool commands

config.status: executing include/mplconfig.h commands

config.status: creating include/mplconfig.h - prefix MPL for
include/config.h defines

configure: ===== done with src/mpl configure =====

configure: sourcing src/mpl/localdefs

configure: ===== configuring src/openpa =====

configure: running /bin/sh ./configure --disable-option-checking
'--prefix=NONE' --with-atomic-primitives=auto_allow_emulation
--cache-file=/dev/null --srcdir=.

checking for a BSD-compatible install... /usr/bin/install -c

checking whether build environment is sane... yes

checking for a thread-safe mkdir -p... confdb/install-sh -c -d

checking for gawk... no

checking for mawk... no

checking for nawk... no

checking for awk... awk

checking whether make sets $(MAKE)... yes

checking whether make supports nested variables... yes

checking for style of include used by make... GNU

checking for gcc... gcc

checking whether the C compiler works... yes

checking for C compiler default output file name... a.out

checking for suffix of executables...

checking whether we are cross compiling... no

checking for suffix of object files... o

checking whether we are using the GNU C compiler... yes

checking whether gcc accepts -g... yes

checking for gcc option to accept ISO C89... none needed

checking whether gcc understands -c and -o together... yes

checking dependency style of gcc... gcc3

checking the archiver (ar) interface... ar

checking build system type... x86_64-apple-darwin13.4.0

checking host system type... x86_64-apple-darwin13.4.0

checking how to print strings... printf

checking for a sed that does not truncate output... /usr/bin/sed

checking for grep that handles long lines and -e... /usr/bin/grep

checking for egrep... /usr/bin/grep -E

checking for fgrep... /usr/bin/grep -F

checking for ld used by gcc...
/Library/Developer/CommandLineTools/usr/bin/ld

checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is
GNU ld... no

checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm

checking the name lister (/usr/bin/nm) interface... BSD nm

checking whether ln -s works... yes

checking the maximum length of command line arguments... 196608

checking whether the shell understands some XSI constructs... yes

checking whether the shell understands "+="... yes

checking how to convert x86_64-apple-darwin13.4.0 file names to
x86_64-apple-darwin13.4.0 format... func_convert_file_noop

checking how to convert x86_64-apple-darwin13.4.0 file names to toolchain
format... func_convert_file_noop

checking for /Library/Developer/CommandLineTools/usr/bin/ld option to
reload object files... -r

checking for objdump... no

checking how to recognize dependent libraries... pass_all

checking for dlltool... no

checking how to associate runtime and link libraries... printf %s\n

checking for archiver @FILE support... no

checking for strip... strip

checking for ranlib... ranlib

checking command to parse /usr/bin/nm output from gcc object... ok

checking for sysroot... no

checking for mt... no

checking if : is a manifest tool... no

checking for dsymutil... dsymutil

checking for nmedit... nmedit

checking for lipo... lipo

checking for otool... otool

checking for otool64... no

checking for -single_module linker flag... yes

checking for -exported_symbols_list linker flag... yes

checking for -force_load linker flag... yes

checking how to run the C preprocessor... gcc -E

checking for ANSI C header files... yes

checking for sys/types.h... yes

checking for sys/stat.h... yes

checking for stdlib.h... yes

checking for string.h... yes

checking for memory.h... yes

checking for strings.h... yes

checking for inttypes.h... yes

checking for stdint.h... yes

checking for unistd.h... yes

checking for dlfcn.h... yes

checking for objdir... .libs

checking if gcc supports -fno-rtti -fno-exceptions... yes

checking for gcc option to produce PIC... -fno-common -DPIC

checking if gcc PIC flag -fno-common -DPIC works... yes

checking if gcc static flag -static works... no

checking if gcc supports -c -o file.o... yes

checking if gcc supports -c -o file.o... (cached) yes

checking whether the gcc linker
(/Library/Developer/CommandLineTools/usr/bin/ld) supports shared
libraries... yes

checking dynamic linker characteristics... darwin13.4.0 dyld

checking how to hardcode library paths into programs... immediate

checking whether stripping libraries is possible... yes

checking if libtool supports shared libraries... yes

checking whether to build shared libraries... yes

checking whether to build static libraries... yes

checking whether make supports nested variables... (cached) yes

checking for gcc... (cached) gcc

checking whether we are using the GNU C compiler... (cached) yes

checking whether gcc accepts -g... (cached) yes

checking for gcc option to accept ISO C89... (cached) none needed

checking whether gcc understands -c and -o together... (cached) yes

checking dependency style of gcc... (cached) gcc3

checking whether to enable assertions... yes

checking pthread.h usability... yes

checking pthread.h presence... yes

checking for pthread.h... yes

checking atomic.h usability... no

checking atomic.h presence... no

checking for atomic.h... no

checking intrin.h usability... no

checking intrin.h presence... no

checking for intrin.h... no

checking for inttypes.h... (cached) yes

checking for stdint.h... (cached) yes

checking stddef.h usability... yes

checking stddef.h presence... yes

checking for stddef.h... yes

checking for C/C++ restrict keyword... __restrict

checking for inline... inline

checking for an ANSI C-conforming const... yes

checking for pthread_create in -lpthread... yes

checking for pthread_yield... no

checking sched.h usability... yes

checking sched.h presence... yes

checking for sched.h... yes

checking for sched_yield... yes

checking if 100 threads can be run at once... yes

checking size of void *... 8

checking size of int... 4

checking whether __attribute__ allowed... yes

checking whether __attribute__((format)) allowed... yes

checking if compiler rejects bogus asm statements... yes

checking for support for gcc x86/x86_64 primitives... yes

checking for support for gcc x86 primitives for pre-Pentium 4... yes

checking for support for gcc ia64 primitives... no

checking for support for gcc PowerPC atomics... no

checking for support for gcc ARM atomics... no

checking for support for gcc SiCortex atomics... no

checking for support for gcc atomic intrinsics... yes

checking for support for Windows NT atomic intrinsics... no

checking for support for Sun atomic operations library... no

checking whether to enable strict fairness checks... no

checking that generated files are newer than configure... done

configure: creating ./config.status

config.status: creating Makefile

config.status: creating src/Makefile

config.status: creating test/Makefile

config.status: creating openpa.pc

config.status: creating src/config.h

config.status: executing depfiles commands

config.status: executing libtool commands

config.status: executing src/opa_config.h commands

config.status: creating src/opa_config.h - prefix OPA for src/config.h
defines

configure: ===== done with src/openpa configure =====

sourcing /Users/michael-steffen/Desktop/mpich-3.1.3/src/pm/hydra/mpichprereq

checking whether the compiler defines __func__... yes

checking whether the compiler defines __FUNC__... no

checking whether the compiler sets __FUNCTION__... yes

checking whether C compiler accepts option -O2... yes

checking whether C compiler option -O2 works with an invalid prototype
program... yes

checking whether routines compiled with -O2 can be linked with ones
compiled without -O2... yes

checking for type of weak symbol alias support... no

checking whether __attribute__ ((weak)) allowed... yes

checking whether __attribute__ ((weak_import)) allowed... yes

checking whether __attribute__((weak,alias(...))) allowed... no

checking for shared library (esp. rpath) characteristics of CC... done
(results in src/env/cc_shlib.conf)

checking whether Fortran 77 compiler accepts option -O2... no

checking how to get verbose linking output from ... configure: WARNING:
compilation failed

checking for Fortran 77 libraries of ...

checking whether  accepts the FLIBS found by autoconf... no

checking for valid entries in FLIBS...

checking whether gcc links with FLIBS found by autoconf... yes

checking whether Fortran 77 and C objects are compatible... no

checking for file... file

configure: error: ****  Incompatible Fortran and C Object File Types!  ****

F77 Object File Type produced by "  " is : : cannot open `' (No such file
or directory).

 C  Object File Type produced by "gcc    -O2" is : : Mach-O 64-bit object
x86_64.

Michaels-MacBook-Pro:mpich-3.1.3 michael-steffen$ make