[mpich-discuss] GFORTRAN on MinGW doesn't link to MPICH-2
Bland, Wesley B.
wbland at anl.gov
Wed Sep 17 14:20:49 CDT 2014
Correct. We don’t support that version at all anymore. There isn’t anyone here running Windows to do the development anymore.
> On Sep 17, 2014, at 2:01 PM, Miao Li <rockymountai at gmail.com> wrote:
>
> But at least the 1.4.1p1 should be supported, or even this is not?
>
> On Wed, Sep 17, 2014 at 12:26 PM, <discuss-request at mpich.org> wrote:
>> Send discuss mailing list submissions to
>> discuss at mpich.org
>>
>> To subscribe or unsubscribe via the World Wide Web, visit
>> https://lists.mpich.org/mailman/listinfo/discuss
>> or, via email, send a message with subject or body 'help' to
>> discuss-request at mpich.org
>>
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>> discuss-owner at mpich.org
>>
>> When replying, please edit your Subject line so it is more specific
>> than "Re: Contents of discuss digest..."
>>
>>
>> Today's Topics:
>>
>> 1. Re: GFORTRAN on MinGW doesn't link (Bland, Wesley B.)
>> 2. Re: GFORTRAN on MinGW doesn't link to MPICH-2 (Balaji, Pavan)
>> 3. Re: GFORTRAN on MinGW doesn't link to MPICH-2 (Miao Li)
>> 4. Re: GFORTRAN on MinGW doesn't link to MPICH-2 (Bland, Wesley B.)
>>
>>
>> ----------------------------------------------------------------------
>>
>> Message: 1
>> Date: Wed, 17 Sep 2014 15:45:07 +0000
>> From: "Bland, Wesley B." <wbland at anl.gov>
>> To: "discuss at mpich.org" <discuss at mpich.org>
>> Cc: "mpich-discuss at mcs.anl.gov" <mpich-discuss at mcs.anl.gov>
>> Subject: Re: [mpich-discuss] GFORTRAN on MinGW doesn't link
>> Message-ID: <667114D6-5B30-4F87-8AD4-857793E47DFA at anl.gov>
>> Content-Type: text/plain; charset="utf-8"
>>
>> Unfortunately, we haven't supported Windows since MPICH version 1.4.1p1. You can find out more at the FAQ page: http://wiki.mpich.org/mpich/index.php/Frequently_Asked_Questions#Q:_Why_can.27t_I_build_MPICH_on_Windows_anymore.3F
>>
>> Thanks,
>> Wesley
>>
>>> On Sep 17, 2014, at 10:39 AM, Miao Li <rockymountai at gmail.com> wrote:
>>>
>>> Hello, Folks
>>>
>>> Sorry to bug you guys with this but I am sure there are tons of people
>>> have encountered this before, I am creating a MPI program with MPICH-2
>>> and gfortran on Windows 8 64 with MinGW, but for some reason the
>>> MPICH-2 can't be linked and errors are:
>>>
>>> hello_mpi.o:hello_mpi.f90:(.text+0x10): undefined reference to `mpi_init_'
>>> hello_mpi.o:hello_mpi.f90:(.text+0x2a): undefined reference to `mpi_comm_size_'
>>> hello_mpi.o:hello_mpi.f90:(.text+0x44): undefined reference to `mpi_comm_rank_'
>>> hello_mpi.o:hello_mpi.f90:(.text+0x54): undefined reference to `mpi_wtime_'
>>> hello_mpi.o:hello_mpi.f90:(.text+0x6bd): undefined reference to `mpi_wtime_'
>>> hello_mpi.o:hello_mpi.f90:(.text+0x7f7): undefined reference to `mpi_finalize_'
>>> c:/users/<myid>/program_files/mingw/bin/../lib/gcc/mingw32/4.8.1/../../../../mingw32/bin/ld.exe:
>>> C:\Users\<myid>\AppData\L
>>> ocal\Temp\cckYDcnb.o: bad reloc address 0x20 in section `.eh_frame'
>>> c:/users/<myid>/program_files/mingw/bin/../lib/gcc/mingw32/4.8.1/../../../../mingw32/bin/ld.exe:
>>> final link failed: Inval
>>> id operation
>>> collect2.exe: error: ld returned 1 exit status
>>>
>>> This is just a "hello world" program and I followed the instructions
>>> in the README.winbin.rtf file
>>>
>>> "
>>>
>>> 2) add ?I?mpich2\include
>>>
>>> 3) add ?L?mpich2\lib
>>>
>>> "
>>>
>>> Some people believe that the "-lmpi" option should be used at the very
>>> end of command, I did that but doesn't help.
>>>
>>> I even tried compiling without any makefile but just a single command like:
>>>
>>>> gfortran.exe -I"C:\Program Files\MPICH2\include" hello_mpi.f90 -L"C:\Program Files\MPICH2\lib" -lmpi
>>>
>>> But still it doesn't work for me.
>>>
>>> Did any of you guys have encountered this before?
>>>
>>> I really look forward your response, any inputs are highly appreciated!!!
>>>
>>> Thank you so much!
>>>
>>> Best Regard
>>>
>>> NOTE:
>>>
>>> Here is my simple makefile:
>>>
>>> F90 = gfortran
>>> MPI_DIR = /c/Program\ Files/MPICH2
>>> MPI_LIB_DIR = $(MPI_DIR)/lib
>>> MPI_LIB_INCLUDE = $(MPI_DIR)/include
>>> MPI_LIB = -L$(MPI_LIB_DIR) -lmpi
>>> MPI_INCLUDE = -I$(MPI_LIB_INCLUDE)
>>> SRC = hello_mpi.f90
>>> OBJ = $(SRC:.f90=.o)
>>> EXEC = hello
>>> $(EXEC): $(OBJ)
>>> $(F90) -o $(EXEC) $(OBJ) $(MPI_LIB)
>>> $(OBJ) : $(SRC)
>>> $(F90) $(MPI_INCLUDE) -c $<
>>> clean:
>>> rm *.o
>>> _______________________________________________
>>> discuss mailing list discuss at mpich.org
>>> To manage subscription options or unsubscribe:
>>> https://lists.mpich.org/mailman/listinfo/discuss
>>
>>
>> ------------------------------
>>
>> Message: 2
>> Date: Wed, 17 Sep 2014 16:23:58 +0000
>> From: "Balaji, Pavan" <balaji at anl.gov>
>> To: "discuss at mpich.org" <discuss at mpich.org>
>> Subject: Re: [mpich-discuss] GFORTRAN on MinGW doesn't link to MPICH-2
>> Message-ID: <1FF62F01-FDF1-45C8-B2F7-2E288B6EF3D2 at anl.gov>
>> Content-Type: text/plain; charset="utf-8"
>>
>> Hello,
>>
>> Windows is not supported anymore. Sorry.
>>
>> http://wiki.mpich.org/mpich/index.php/Frequently_Asked_Questions#Q:_Why_can.27t_I_build_MPICH_on_Windows_anymore.3F
>>
>> ? Pavan
>>
>> On Sep 17, 2014, at 10:43 AM, Miao Li <rockymountai at gmail.com> wrote:
>>
>>> Hello, Folks
>>>
>>> Sorry to bug you guys with this but I am sure there are tons of people
>>> have encountered this before, I am creating a MPI program with MPICH-2
>>> and gfortran on Windows 8 64 with MinGW, but for some reason the
>>> MPICH-2 can't be linked and errors are:
>>>
>>> hello_mpi.o:hello_mpi.f90:(.text+0x10): undefined reference to `mpi_init_'
>>> hello_mpi.o:hello_mpi.f90:(.text+0x2a): undefined reference to `mpi_comm_size_'
>>> hello_mpi.o:hello_mpi.f90:(.text+0x44): undefined reference to `mpi_comm_rank_'
>>> hello_mpi.o:hello_mpi.f90:(.text+0x54): undefined reference to `mpi_wtime_'
>>> hello_mpi.o:hello_mpi.f90:(.text+0x6bd): undefined reference to `mpi_wtime_'
>>> hello_mpi.o:hello_mpi.f90:(.text+0x7f7): undefined reference to `mpi_finalize_'
>>> c:/users/<myid>/program_files/mingw/bin/../lib/gcc/mingw32/4.8.1/../../../../mingw32/bin/ld.exe:
>>> C:\Users\<myid>\AppData\L
>>> ocal\Temp\cckYDcnb.o: bad reloc address 0x20 in section `.eh_frame'
>>> c:/users/<myid>/program_files/mingw/bin/../lib/gcc/mingw32/4.8.1/../../../../mingw32/bin/ld.exe:
>>> final link failed: Inval
>>> id operation
>>> collect2.exe: error: ld returned 1 exit status
>>>
>>> This is just a "hello world" program and I followed the instructions
>>> in the README.winbin.rtf file
>>>
>>> "
>>>
>>> 2) add ?I?mpich2\include
>>>
>>> 3) add ?L?mpich2\lib
>>>
>>> "
>>>
>>> Some people believe that the "-lmpi" option should be used at the very
>>> end of command, I did that but doesn't help.
>>>
>>> I even tried compiling without any makefile but just a single command like:
>>>
>>>> gfortran.exe -I"C:\Program Files\MPICH2\include" hello_mpi.f90 -L"C:\Program Files\MPICH2\lib" -lmpi
>>>
>>> But still it doesn't work for me.
>>>
>>> Did any of you guys have encountered this before?
>>>
>>> I really look forward your response, any inputs are highly appreciated!!!
>>>
>>> Thank you so much!
>>>
>>> Best Regard
>>>
>>> NOTE:
>>>
>>> Here is my simple makefile:
>>>
>>> F90 = gfortran
>>> MPI_DIR = /c/Program\ Files/MPICH2
>>> MPI_LIB_DIR = $(MPI_DIR)/lib
>>> MPI_LIB_INCLUDE = $(MPI_DIR)/include
>>> MPI_LIB = -L$(MPI_LIB_DIR) -lmpi
>>> MPI_INCLUDE = -I$(MPI_LIB_INCLUDE)
>>> SRC = hello_mpi.f90
>>> OBJ = $(SRC:.f90=.o)
>>> EXEC = hello
>>> $(EXEC): $(OBJ)
>>> $(F90) -o $(EXEC) $(OBJ) $(MPI_LIB)
>>> $(OBJ) : $(SRC)
>>> $(F90) $(MPI_INCLUDE) -c $<
>>> clean:
>>> rm *.o
>>> _______________________________________________
>>> discuss mailing list discuss at mpich.org
>>> To manage subscription options or unsubscribe:
>>> https://lists.mpich.org/mailman/listinfo/discuss
>>
>> --
>> Pavan Balaji ??
>> http://www.mcs.anl.gov/~balaji
>>
>>
>> ------------------------------
>>
>> Message: 3
>> Date: Wed, 17 Sep 2014 11:38:24 -0500
>> From: Miao Li <rockymountai at gmail.com>
>> To: discuss at mpich.org
>> Subject: Re: [mpich-discuss] GFORTRAN on MinGW doesn't link to MPICH-2
>> Message-ID:
>> <CAKOfFcd53dp3FEDNjqWxSiFFBYgxeQj2g1sX+8LPV253vmd_wA at mail.gmail.com>
>> Content-Type: text/plain; charset=UTF-8
>>
>> Hello, Bland
>>
>> Thank you for your input, but 1.4.1p is exactly what I am using now,
>> it should be recognized by the system, I believe.
>>
>> It is downloaded from
>> http://www.mcs.anl.gov/research/projects/mpich2staging/goodell/downloads/index.php?s=downloads
>>
>> On Wed, Sep 17, 2014 at 10:45 AM, <discuss-request at mpich.org> wrote:
>>> Send discuss mailing list submissions to
>>> discuss at mpich.org
>>>
>>> To subscribe or unsubscribe via the World Wide Web, visit
>>> https://lists.mpich.org/mailman/listinfo/discuss
>>> or, via email, send a message with subject or body 'help' to
>>> discuss-request at mpich.org
>>>
>>> You can reach the person managing the list at
>>> discuss-owner at mpich.org
>>>
>>> When replying, please edit your Subject line so it is more specific
>>> than "Re: Contents of discuss digest..."
>>>
>>>
>>> Today's Topics:
>>>
>>> 1. mpich-3.2a for Blue Gene /Q omits spi libraries from the
>>> wrappers (William Scullin)
>>> 2. MPI log via MPE on CRAY XC30 machine (Milind Chabbi)
>>> 3. Passwords on small cluster (Bob Ilgner)
>>> 4. Re: Passwords on small cluster (Reuti)
>>> 5. Re: MPI log via MPE on CRAY XC30 machine (Balaji, Pavan)
>>> 6. GFORTRAN on MinGW doesn't link (Miao Li)
>>> 7. GFORTRAN on MinGW doesn't link to MPICH-2 (Miao Li)
>>> 8. Re: GFORTRAN on MinGW doesn't link (Bland, Wesley B.)
>>>
>>>
>>> ----------------------------------------------------------------------
>>>
>>> Message: 1
>>> Date: Tue, 16 Sep 2014 16:06:11 -0500
>>> From: William Scullin <wscullin at alcf.anl.gov>
>>> To: <discuss at mpich.org>
>>> Subject: [mpich-discuss] mpich-3.2a for Blue Gene /Q omits spi
>>> libraries from the wrappers
>>> Message-ID:
>>> <CAFmX=Zya7G_TB939v9pLnykzRUyE0O_p5p_oRn4SY0QrHz=nMA at mail.gmail.com>
>>> Content-Type: text/plain; charset="UTF-8"
>>>
>>> When building mpich-3.2a for Blue Gene /Q and following the same
>>> procedure used for building mpich-3.1.2 for BG/Q, the required linking
>>> information for spi and pami is omitted from the wrappers. I'm not
>>> sure if this is intentional or not.
>>>
>>> Thanks,
>>> William
>>>
>>>
>>> Patching the wrappers to reflect the required linking gives the following diff :
>>>
>>> [wscullin at vestasn1 ~]$ diff
>>> /projects/Operations/wscullin/mpich-3.2a1/gcc-4.4.7/bin/mpicc
>>> /projects/Operations/wscullin/mpich-3.2a1/gcc-4.4.7/bin/mpicc-postpatch
>>> 265c265
>>> < $Show $CC $PROFILE_INCPATHS
>>> -L/bgsys/drivers/V1R2M2/ppc64/spi/lib
>>> -L/bgsys/drivers/V1R2M2/ppc64/comm/lib "${allargs[@]}" -I$includedir
>>> -L$libdir $PROFILE_PRELIB $PROFILE_FOO $rpath_flags -lmpi
>>> $PROFILE_POSTLIB
>>> ---
>>>> $Show $CC $PROFILE_INCPATHS -L/bgsys/drivers/V1R2M2/ppc64/spi/lib -L/bgsys/drivers/V1R2M2/ppc64/comm/lib "${allargs[@]}" -I$includedir -L$libdir $PROFILE_PRELIB $PROFILE_FOO $rpath_flags -lmpi $PROFILE_POSTLIB -lpami-gcc -lpthread -lSPI -lSPI_cnk -lrt -lstdc++
>>>
>>> Full diff of mpich-3.1.2 versus 3.2a wrappers:
>>>
>>> [wscullin at vestasn1 ~]$ diff
>>> /projects/Operations/wscullin/mpich-3.1.2/gcc-4.4.7/bin/mpicc
>>> /projects/Operations/wscullin/mpich-3.2a1/gcc-4.4.7/bin/mpicc
>>> 30,34c30,34
>>> < prefix=/projects/Operations/wscullin/mpich-3.1.2/gcc-4.4.7
>>> < exec_prefix=/projects/Operations/wscullin/mpich-3.1.2/gcc-4.4.7
>>> < sysconfdir=/projects/Operations/wscullin/mpich-3.1.2/gcc-4.4.7/etc
>>> < includedir=/projects/Operations/wscullin/mpich-3.1.2/gcc-4.4.7/include
>>> < libdir=/projects/Operations/wscullin/mpich-3.1.2/gcc-4.4.7/lib
>>> ---
>>>> prefix=/projects/Operations/wscullin/mpich-3.2a1/gcc-4.4.7
>>>> exec_prefix=/projects/Operations/wscullin/mpich-3.2a1/gcc-4.4.7
>>>> sysconfdir=/projects/Operations/wscullin/mpich-3.2a1/gcc-4.4.7/etc
>>>> includedir=/projects/Operations/wscullin/mpich-3.2a1/gcc-4.4.7/include
>>>> libdir=/projects/Operations/wscullin/mpich-3.2a1/gcc-4.4.7/lib
>>> 40c40
>>> < MPICH_VERSION="3.1.2"
>>> ---
>>>> MPICH_VERSION="3.2a1"
>>> 262c262
>>> < $Show $CC $PROFILE_INCPATHS
>>> -L/bgsys/drivers/V1R2M2/ppc64/spi/lib
>>> -L/bgsys/drivers/V1R2M2/ppc64/comm/lib
>>> -L/bgsys/drivers/V1R2M2/ppc64/spi/lib
>>> -L/bgsys/drivers/V1R2M2/ppc64/comm/lib "${allargs[@]}" -I$includedir
>>> ---
>>>> $Show $CC $PROFILE_INCPATHS -L/bgsys/drivers/V1R2M2/ppc64/spi/lib -L/bgsys/drivers/V1R2M2/ppc64/comm/lib "${allargs[@]}" -I$includedir
>>> 265c265
>>> < $Show $CC $PROFILE_INCPATHS
>>> -L/bgsys/drivers/V1R2M2/ppc64/spi/lib
>>> -L/bgsys/drivers/V1R2M2/ppc64/comm/lib
>>> -L/bgsys/drivers/V1R2M2/ppc64/spi/lib
>>> -L/bgsys/drivers/V1R2M2/ppc64/comm/lib "${allargs[@]}" -I$includedir
>>> -L$libdir $PROFILE_PRELIB $PROFILE_FOO $rpath_flags -lmpi
>>> $PROFILE_POSTLIB -lpami-gcc -lpthread -lSPI -lSPI_cnk -lrt -lstdc++
>>> ---
>>>> $Show $CC $PROFILE_INCPATHS -L/bgsys/drivers/V1R2M2/ppc64/spi/lib -L/bgsys/drivers/V1R2M2/ppc64/comm/lib "${allargs[@]}" -I$includedir -L$libdir $PROFILE_PRELIB $PROFILE_FOO $rpath_flags -lmpi $PROFILE_POSTLIB
>>>
>>>
>>> ------------------------------
>>>
>>> Message: 2
>>> Date: Wed, 17 Sep 2014 00:26:05 -0500
>>> From: Milind Chabbi <Milind.Chabbi at rice.edu>
>>> To: mpich-discuss at mcs.anl.gov
>>> Subject: [mpich-discuss] MPI log via MPE on CRAY XC30 machine
>>> Message-ID:
>>> <CAMmz+Y=vvO5vkwyXaKeGg1BKB+Z7zbktZJiwU3rkMjAh8Z058Q at mail.gmail.com>
>>> Content-Type: text/plain; charset=UTF-8
>>>
>>> I am trying to gather MPI logs on CRAY XC30 (Edison machine at NERSC.)
>>> I built MPE 2-1.3 (ftp://ftp.mcs.anl.gov/pub/mpi/mpe/mpe2.tar.gz) with
>>> the following configure command:
>>>
>>> ./configure MPI_CC=cc F77=ftn MPI_F77=ftn --prefix=/XXXXX/mpe2-1.3.0-install
>>>
>>> I compiled a simple application with the following command:
>>> /XXXX/mpe2-1.3.0-install/bin/mpecc test1.cpp -mpilog
>>>
>>> The code compiled fine, but the execution did not generate any log files.
>>>
>>> I am trying to generate logs files of MPI calls to view with Jumpshot
>>> on programs compiled on Cray XC30. Can you suggest the steps needed to
>>> get this working?
>>>
>>> Thanks
>>> -Milind
>>>
>>>
>>> ------------------------------
>>>
>>> Message: 3
>>> Date: Wed, 17 Sep 2014 08:41:00 +0200
>>> From: Bob Ilgner <bobilgner at gmail.com>
>>> To: discuss at mpich.org
>>> Subject: [mpich-discuss] Passwords on small cluster
>>> Message-ID:
>>> <CAKv15b_xROGRhPzxU3ZXka2KiC2-xz8+Vr1DHc=NYFHE-fQ6MA at mail.gmail.com>
>>> Content-Type: text/plain; charset="utf-8"
>>>
>>> Dear all,
>>>
>>>
>>> I am trying to run my mpi job on a small cluster with 5 nodes. When I run
>>>
>>> mpirun -n 5 --host node01,node02,node03,node04,node05 ./hesp
>>>
>>> the system requests a password for node01.
>>>
>>> if I run the job only on node05 then no pasword is requested and the job
>>> runs OK Is there some way I can include a password in the host file, or
>>> otherwise ?
>>>
>>> regards.
>>> -------------- next part --------------
>>> An HTML attachment was scrubbed...
>>> URL: <http://lists.mpich.org/pipermail/discuss/attachments/20140917/04ab8446/attachment-0001.html>
>>>
>>> ------------------------------
>>>
>>> Message: 4
>>> Date: Wed, 17 Sep 2014 13:00:32 +0200
>>> From: Reuti <reuti at staff.uni-marburg.de>
>>> To: discuss at mpich.org
>>> Subject: Re: [mpich-discuss] Passwords on small cluster
>>> Message-ID:
>>> <CBCC63B9-F266-4B59-8961-EFB22FEFD635 at staff.uni-marburg.de>
>>> Content-Type: text/plain; charset=us-ascii
>>>
>>> Hi,
>>>
>>> Am 17.09.2014 um 08:41 schrieb Bob Ilgner:
>>>
>>>> I am trying to run my mpi job on a small cluster with 5 nodes. When I run
>>>>
>>>> mpirun -n 5 --host node01,node02,node03,node04,node05 ./hesp
>>>>
>>>> the system requests a password for node01.
>>>>
>>>> if I run the job only on node05 then no pasword is requested and the job runs OK Is there some way I can include a password in the host file, or otherwise ?
>>>
>>> You will have to set up some kind of passwordless access, either by a passphraseless SSH-key (if you are the only user), or hostbased authentication (to make the setup one time for all users).
>>>
>>> https://www.open-mpi.org/faq/?category=rsh#ssh-keys (although this page is from the Open MPI site, the constraints are the same as in MPICH)
>>>
>>> or:
>>>
>>> https://arc.liv.ac.uk/SGE/howto/hostbased-ssh.html
>>>
>>> -- Reuti
>>>
>>> PS: You could also use an SSH-agent http://www.unixwiz.net/techtips/ssh-agent-forwarding.html which will answer all further requests for the passphrase after you entered it one time.
>>>
>>> ------------------------------
>>>
>>> Message: 5
>>> Date: Wed, 17 Sep 2014 11:20:50 +0000
>>> From: "Balaji, Pavan" <balaji at anl.gov>
>>> To: "discuss at mpich.org" <discuss at mpich.org>
>>> Subject: Re: [mpich-discuss] MPI log via MPE on CRAY XC30 machine
>>> Message-ID: <77BB388D-E452-48B5-89C2-DA16D773F2CA at anl.gov>
>>> Content-Type: text/plain; charset="utf-8"
>>>
>>> Milind,
>>>
>>> Did you try this link?
>>>
>>> http://wiki.mpich.org/mpich/index.php/MPE_by_example
>>>
>>> ? Pavan
>>>
>>> On Sep 17, 2014, at 12:26 AM, Milind Chabbi <milind.chabbi at rice.edu> wrote:
>>>
>>>> I am trying to gather MPI logs on CRAY XC30 (Edison machine at NERSC.)
>>>> I built MPE 2-1.3 (ftp://ftp.mcs.anl.gov/pub/mpi/mpe/mpe2.tar.gz) with
>>>> the following configure command:
>>>>
>>>> ./configure MPI_CC=cc F77=ftn MPI_F77=ftn --prefix=/XXXXX/mpe2-1.3.0-install
>>>>
>>>> I compiled a simple application with the following command:
>>>> /XXXX/mpe2-1.3.0-install/bin/mpecc test1.cpp -mpilog
>>>>
>>>> The code compiled fine, but the execution did not generate any log files.
>>>>
>>>> I am trying to generate logs files of MPI calls to view with Jumpshot
>>>> on programs compiled on Cray XC30. Can you suggest the steps needed to
>>>> get this working?
>>>>
>>>> Thanks
>>>> -Milind
>>>> _______________________________________________
>>>> discuss mailing list discuss at mpich.org
>>>> To manage subscription options or unsubscribe:
>>>> https://lists.mpich.org/mailman/listinfo/discuss
>>>
>>> --
>>> Pavan Balaji ??
>>> http://www.mcs.anl.gov/~balaji
>>>
>>>
>>> ------------------------------
>>>
>>> Message: 6
>>> Date: Wed, 17 Sep 2014 10:39:35 -0500
>>> From: Miao Li <rockymountai at gmail.com>
>>> To: mpich-discuss at mcs.anl.gov
>>> Subject: [mpich-discuss] GFORTRAN on MinGW doesn't link
>>> Message-ID:
>>> <CAKOfFceOwHjAvvpWe5+WPnWm9-Bjn6iXCcsNGbXtFBcuHZbGVA at mail.gmail.com>
>>> Content-Type: text/plain; charset=UTF-8
>>>
>>> Hello, Folks
>>>
>>> Sorry to bug you guys with this but I am sure there are tons of people
>>> have encountered this before, I am creating a MPI program with MPICH-2
>>> and gfortran on Windows 8 64 with MinGW, but for some reason the
>>> MPICH-2 can't be linked and errors are:
>>>
>>> hello_mpi.o:hello_mpi.f90:(.text+0x10): undefined reference to `mpi_init_'
>>> hello_mpi.o:hello_mpi.f90:(.text+0x2a): undefined reference to `mpi_comm_size_'
>>> hello_mpi.o:hello_mpi.f90:(.text+0x44): undefined reference to `mpi_comm_rank_'
>>> hello_mpi.o:hello_mpi.f90:(.text+0x54): undefined reference to `mpi_wtime_'
>>> hello_mpi.o:hello_mpi.f90:(.text+0x6bd): undefined reference to `mpi_wtime_'
>>> hello_mpi.o:hello_mpi.f90:(.text+0x7f7): undefined reference to `mpi_finalize_'
>>> c:/users/<myid>/program_files/mingw/bin/../lib/gcc/mingw32/4.8.1/../../../../mingw32/bin/ld.exe:
>>> C:\Users\<myid>\AppData\L
>>> ocal\Temp\cckYDcnb.o: bad reloc address 0x20 in section `.eh_frame'
>>> c:/users/<myid>/program_files/mingw/bin/../lib/gcc/mingw32/4.8.1/../../../../mingw32/bin/ld.exe:
>>> final link failed: Inval
>>> id operation
>>> collect2.exe: error: ld returned 1 exit status
>>>
>>> This is just a "hello world" program and I followed the instructions
>>> in the README.winbin.rtf file
>>>
>>> "
>>>
>>> 2) add ?I?mpich2\include
>>>
>>> 3) add ?L?mpich2\lib
>>>
>>> "
>>>
>>> Some people believe that the "-lmpi" option should be used at the very
>>> end of command, I did that but doesn't help.
>>>
>>> I even tried compiling without any makefile but just a single command like:
>>>
>>>> gfortran.exe -I"C:\Program Files\MPICH2\include" hello_mpi.f90 -L"C:\Program Files\MPICH2\lib" -lmpi
>>>
>>> But still it doesn't work for me.
>>>
>>> Did any of you guys have encountered this before?
>>>
>>> I really look forward your response, any inputs are highly appreciated!!!
>>>
>>> Thank you so much!
>>>
>>> Best Regard
>>>
>>> NOTE:
>>>
>>> Here is my simple makefile:
>>>
>>> F90 = gfortran
>>> MPI_DIR = /c/Program\ Files/MPICH2
>>> MPI_LIB_DIR = $(MPI_DIR)/lib
>>> MPI_LIB_INCLUDE = $(MPI_DIR)/include
>>> MPI_LIB = -L$(MPI_LIB_DIR) -lmpi
>>> MPI_INCLUDE = -I$(MPI_LIB_INCLUDE)
>>> SRC = hello_mpi.f90
>>> OBJ = $(SRC:.f90=.o)
>>> EXEC = hello
>>> $(EXEC): $(OBJ)
>>> $(F90) -o $(EXEC) $(OBJ) $(MPI_LIB)
>>> $(OBJ) : $(SRC)
>>> $(F90) $(MPI_INCLUDE) -c $<
>>> clean:
>>> rm *.o
>>>
>>>
>>> ------------------------------
>>>
>>> Message: 7
>>> Date: Wed, 17 Sep 2014 10:43:04 -0500
>>> From: Miao Li <rockymountai at gmail.com>
>>> To: discuss at mpich.org
>>> Subject: [mpich-discuss] GFORTRAN on MinGW doesn't link to MPICH-2
>>> Message-ID:
>>> <CAKOfFceNJnTYnzcWQgq9_qwJvpotgk8eroN=Oq--4Me-LJiG=w at mail.gmail.com>
>>> Content-Type: text/plain; charset=UTF-8
>>>
>>> Hello, Folks
>>>
>>> Sorry to bug you guys with this but I am sure there are tons of people
>>> have encountered this before, I am creating a MPI program with MPICH-2
>>> and gfortran on Windows 8 64 with MinGW, but for some reason the
>>> MPICH-2 can't be linked and errors are:
>>>
>>> hello_mpi.o:hello_mpi.f90:(.text+0x10): undefined reference to `mpi_init_'
>>> hello_mpi.o:hello_mpi.f90:(.text+0x2a): undefined reference to `mpi_comm_size_'
>>> hello_mpi.o:hello_mpi.f90:(.text+0x44): undefined reference to `mpi_comm_rank_'
>>> hello_mpi.o:hello_mpi.f90:(.text+0x54): undefined reference to `mpi_wtime_'
>>> hello_mpi.o:hello_mpi.f90:(.text+0x6bd): undefined reference to `mpi_wtime_'
>>> hello_mpi.o:hello_mpi.f90:(.text+0x7f7): undefined reference to `mpi_finalize_'
>>> c:/users/<myid>/program_files/mingw/bin/../lib/gcc/mingw32/4.8.1/../../../../mingw32/bin/ld.exe:
>>> C:\Users\<myid>\AppData\L
>>> ocal\Temp\cckYDcnb.o: bad reloc address 0x20 in section `.eh_frame'
>>> c:/users/<myid>/program_files/mingw/bin/../lib/gcc/mingw32/4.8.1/../../../../mingw32/bin/ld.exe:
>>> final link failed: Inval
>>> id operation
>>> collect2.exe: error: ld returned 1 exit status
>>>
>>> This is just a "hello world" program and I followed the instructions
>>> in the README.winbin.rtf file
>>>
>>> "
>>>
>>> 2) add ?I?mpich2\include
>>>
>>> 3) add ?L?mpich2\lib
>>>
>>> "
>>>
>>> Some people believe that the "-lmpi" option should be used at the very
>>> end of command, I did that but doesn't help.
>>>
>>> I even tried compiling without any makefile but just a single command like:
>>>
>>>> gfortran.exe -I"C:\Program Files\MPICH2\include" hello_mpi.f90 -L"C:\Program Files\MPICH2\lib" -lmpi
>>>
>>> But still it doesn't work for me.
>>>
>>> Did any of you guys have encountered this before?
>>>
>>> I really look forward your response, any inputs are highly appreciated!!!
>>>
>>> Thank you so much!
>>>
>>> Best Regard
>>>
>>> NOTE:
>>>
>>> Here is my simple makefile:
>>>
>>> F90 = gfortran
>>> MPI_DIR = /c/Program\ Files/MPICH2
>>> MPI_LIB_DIR = $(MPI_DIR)/lib
>>> MPI_LIB_INCLUDE = $(MPI_DIR)/include
>>> MPI_LIB = -L$(MPI_LIB_DIR) -lmpi
>>> MPI_INCLUDE = -I$(MPI_LIB_INCLUDE)
>>> SRC = hello_mpi.f90
>>> OBJ = $(SRC:.f90=.o)
>>> EXEC = hello
>>> $(EXEC): $(OBJ)
>>> $(F90) -o $(EXEC) $(OBJ) $(MPI_LIB)
>>> $(OBJ) : $(SRC)
>>> $(F90) $(MPI_INCLUDE) -c $<
>>> clean:
>>> rm *.o
>>>
>>>
>>> ------------------------------
>>>
>>> Message: 8
>>> Date: Wed, 17 Sep 2014 15:45:07 +0000
>>> From: "Bland, Wesley B." <wbland at anl.gov>
>>> To: "discuss at mpich.org" <discuss at mpich.org>
>>> Cc: "mpich-discuss at mcs.anl.gov" <mpich-discuss at mcs.anl.gov>
>>> Subject: Re: [mpich-discuss] GFORTRAN on MinGW doesn't link
>>> Message-ID: <667114D6-5B30-4F87-8AD4-857793E47DFA at anl.gov>
>>> Content-Type: text/plain; charset="utf-8"
>>>
>>> Unfortunately, we haven't supported Windows since MPICH version 1.4.1p1. You can find out more at the FAQ page: http://wiki.mpich.org/mpich/index.php/Frequently_Asked_Questions#Q:_Why_can.27t_I_build_MPICH_on_Windows_anymore.3F
>>>
>>> Thanks,
>>> Wesley
>>>
>>>> On Sep 17, 2014, at 10:39 AM, Miao Li <rockymountai at gmail.com> wrote:
>>>>
>>>> Hello, Folks
>>>>
>>>> Sorry to bug you guys with this but I am sure there are tons of people
>>>> have encountered this before, I am creating a MPI program with MPICH-2
>>>> and gfortran on Windows 8 64 with MinGW, but for some reason the
>>>> MPICH-2 can't be linked and errors are:
>>>>
>>>> hello_mpi.o:hello_mpi.f90:(.text+0x10): undefined reference to `mpi_init_'
>>>> hello_mpi.o:hello_mpi.f90:(.text+0x2a): undefined reference to `mpi_comm_size_'
>>>> hello_mpi.o:hello_mpi.f90:(.text+0x44): undefined reference to `mpi_comm_rank_'
>>>> hello_mpi.o:hello_mpi.f90:(.text+0x54): undefined reference to `mpi_wtime_'
>>>> hello_mpi.o:hello_mpi.f90:(.text+0x6bd): undefined reference to `mpi_wtime_'
>>>> hello_mpi.o:hello_mpi.f90:(.text+0x7f7): undefined reference to `mpi_finalize_'
>>>> c:/users/<myid>/program_files/mingw/bin/../lib/gcc/mingw32/4.8.1/../../../../mingw32/bin/ld.exe:
>>>> C:\Users\<myid>\AppData\L
>>>> ocal\Temp\cckYDcnb.o: bad reloc address 0x20 in section `.eh_frame'
>>>> c:/users/<myid>/program_files/mingw/bin/../lib/gcc/mingw32/4.8.1/../../../../mingw32/bin/ld.exe:
>>>> final link failed: Inval
>>>> id operation
>>>> collect2.exe: error: ld returned 1 exit status
>>>>
>>>> This is just a "hello world" program and I followed the instructions
>>>> in the README.winbin.rtf file
>>>>
>>>> "
>>>>
>>>> 2) add ?I?mpich2\include
>>>>
>>>> 3) add ?L?mpich2\lib
>>>>
>>>> "
>>>>
>>>> Some people believe that the "-lmpi" option should be used at the very
>>>> end of command, I did that but doesn't help.
>>>>
>>>> I even tried compiling without any makefile but just a single command like:
>>>>
>>>>> gfortran.exe -I"C:\Program Files\MPICH2\include" hello_mpi.f90 -L"C:\Program Files\MPICH2\lib" -lmpi
>>>>
>>>> But still it doesn't work for me.
>>>>
>>>> Did any of you guys have encountered this before?
>>>>
>>>> I really look forward your response, any inputs are highly appreciated!!!
>>>>
>>>> Thank you so much!
>>>>
>>>> Best Regard
>>>>
>>>> NOTE:
>>>>
>>>> Here is my simple makefile:
>>>>
>>>> F90 = gfortran
>>>> MPI_DIR = /c/Program\ Files/MPICH2
>>>> MPI_LIB_DIR = $(MPI_DIR)/lib
>>>> MPI_LIB_INCLUDE = $(MPI_DIR)/include
>>>> MPI_LIB = -L$(MPI_LIB_DIR) -lmpi
>>>> MPI_INCLUDE = -I$(MPI_LIB_INCLUDE)
>>>> SRC = hello_mpi.f90
>>>> OBJ = $(SRC:.f90=.o)
>>>> EXEC = hello
>>>> $(EXEC): $(OBJ)
>>>> $(F90) -o $(EXEC) $(OBJ) $(MPI_LIB)
>>>> $(OBJ) : $(SRC)
>>>> $(F90) $(MPI_INCLUDE) -c $<
>>>> clean:
>>>> rm *.o
>>>> _______________________________________________
>>>> discuss mailing list discuss at mpich.org
>>>> To manage subscription options or unsubscribe:
>>>> https://lists.mpich.org/mailman/listinfo/discuss
>>>
>>>
>>> ------------------------------
>>>
>>> _______________________________________________
>>> discuss mailing list
>>> discuss at mpich.org
>>> https://lists.mpich.org/mailman/listinfo/discuss
>>>
>>> End of discuss Digest, Vol 23, Issue 34
>>> ***************************************
>>
>>
>> ------------------------------
>>
>> Message: 4
>> Date: Wed, 17 Sep 2014 17:26:09 +0000
>> From: "Bland, Wesley B." <wbland at anl.gov>
>> To: "discuss at mpich.org" <discuss at mpich.org>
>> Subject: Re: [mpich-discuss] GFORTRAN on MinGW doesn't link to MPICH-2
>> Message-ID: <D6429AC8-95B5-4397-98E6-2D004686631B at anl.gov>
>> Content-Type: text/plain; charset="utf-8"
>>
>> Hi Miao,
>>
>> I?m sorry. All we can do at this point is provide the download. We don?t have any developers left to support Windows. If you need to run MPI on Windows, we suggest using Microsoft MPI as it is still well supported. You can also use Intel MPI, but it is not free.
>>
>> Thanks,
>> Wesley
>>
>>> On Sep 17, 2014, at 11:38 AM, Miao Li <rockymountai at gmail.com> wrote:
>>>
>>> Hello, Bland
>>>
>>> Thank you for your input, but 1.4.1p is exactly what I am using now,
>>> it should be recognized by the system, I believe.
>>>
>>> It is downloaded from
>>> http://www.mcs.anl.gov/research/projects/mpich2staging/goodell/downloads/index.php?s=downloads
>>>
>>> On Wed, Sep 17, 2014 at 10:45 AM, <discuss-request at mpich.org> wrote:
>>>> Send discuss mailing list submissions to
>>>> discuss at mpich.org
>>>>
>>>> To subscribe or unsubscribe via the World Wide Web, visit
>>>> https://lists.mpich.org/mailman/listinfo/discuss
>>>> or, via email, send a message with subject or body 'help' to
>>>> discuss-request at mpich.org
>>>>
>>>> You can reach the person managing the list at
>>>> discuss-owner at mpich.org
>>>>
>>>> When replying, please edit your Subject line so it is more specific
>>>> than "Re: Contents of discuss digest..."
>>>>
>>>>
>>>> Today's Topics:
>>>>
>>>> 1. mpich-3.2a for Blue Gene /Q omits spi libraries from the
>>>> wrappers (William Scullin)
>>>> 2. MPI log via MPE on CRAY XC30 machine (Milind Chabbi)
>>>> 3. Passwords on small cluster (Bob Ilgner)
>>>> 4. Re: Passwords on small cluster (Reuti)
>>>> 5. Re: MPI log via MPE on CRAY XC30 machine (Balaji, Pavan)
>>>> 6. GFORTRAN on MinGW doesn't link (Miao Li)
>>>> 7. GFORTRAN on MinGW doesn't link to MPICH-2 (Miao Li)
>>>> 8. Re: GFORTRAN on MinGW doesn't link (Bland, Wesley B.)
>>>>
>>>>
>>>> ----------------------------------------------------------------------
>>>>
>>>> Message: 1
>>>> Date: Tue, 16 Sep 2014 16:06:11 -0500
>>>> From: William Scullin <wscullin at alcf.anl.gov>
>>>> To: <discuss at mpich.org>
>>>> Subject: [mpich-discuss] mpich-3.2a for Blue Gene /Q omits spi
>>>> libraries from the wrappers
>>>> Message-ID:
>>>> <CAFmX=Zya7G_TB939v9pLnykzRUyE0O_p5p_oRn4SY0QrHz=nMA at mail.gmail.com>
>>>> Content-Type: text/plain; charset="UTF-8"
>>>>
>>>> When building mpich-3.2a for Blue Gene /Q and following the same
>>>> procedure used for building mpich-3.1.2 for BG/Q, the required linking
>>>> information for spi and pami is omitted from the wrappers. I'm not
>>>> sure if this is intentional or not.
>>>>
>>>> Thanks,
>>>> William
>>>>
>>>>
>>>> Patching the wrappers to reflect the required linking gives the following diff :
>>>>
>>>> [wscullin at vestasn1 ~]$ diff
>>>> /projects/Operations/wscullin/mpich-3.2a1/gcc-4.4.7/bin/mpicc
>>>> /projects/Operations/wscullin/mpich-3.2a1/gcc-4.4.7/bin/mpicc-postpatch
>>>> 265c265
>>>> < $Show $CC $PROFILE_INCPATHS
>>>> -L/bgsys/drivers/V1R2M2/ppc64/spi/lib
>>>> -L/bgsys/drivers/V1R2M2/ppc64/comm/lib "${allargs[@]}" -I$includedir
>>>> -L$libdir $PROFILE_PRELIB $PROFILE_FOO $rpath_flags -lmpi
>>>> $PROFILE_POSTLIB
>>>> ---
>>>>> $Show $CC $PROFILE_INCPATHS -L/bgsys/drivers/V1R2M2/ppc64/spi/lib -L/bgsys/drivers/V1R2M2/ppc64/comm/lib "${allargs[@]}" -I$includedir -L$libdir $PROFILE_PRELIB $PROFILE_FOO $rpath_flags -lmpi $PROFILE_POSTLIB -lpami-gcc -lpthread -lSPI -lSPI_cnk -lrt -lstdc++
>>>>
>>>> Full diff of mpich-3.1.2 versus 3.2a wrappers:
>>>>
>>>> [wscullin at vestasn1 ~]$ diff
>>>> /projects/Operations/wscullin/mpich-3.1.2/gcc-4.4.7/bin/mpicc
>>>> /projects/Operations/wscullin/mpich-3.2a1/gcc-4.4.7/bin/mpicc
>>>> 30,34c30,34
>>>> < prefix=/projects/Operations/wscullin/mpich-3.1.2/gcc-4.4.7
>>>> < exec_prefix=/projects/Operations/wscullin/mpich-3.1.2/gcc-4.4.7
>>>> < sysconfdir=/projects/Operations/wscullin/mpich-3.1.2/gcc-4.4.7/etc
>>>> < includedir=/projects/Operations/wscullin/mpich-3.1.2/gcc-4.4.7/include
>>>> < libdir=/projects/Operations/wscullin/mpich-3.1.2/gcc-4.4.7/lib
>>>> ---
>>>>> prefix=/projects/Operations/wscullin/mpich-3.2a1/gcc-4.4.7
>>>>> exec_prefix=/projects/Operations/wscullin/mpich-3.2a1/gcc-4.4.7
>>>>> sysconfdir=/projects/Operations/wscullin/mpich-3.2a1/gcc-4.4.7/etc
>>>>> includedir=/projects/Operations/wscullin/mpich-3.2a1/gcc-4.4.7/include
>>>>> libdir=/projects/Operations/wscullin/mpich-3.2a1/gcc-4.4.7/lib
>>>> 40c40
>>>> < MPICH_VERSION="3.1.2"
>>>> ---
>>>>> MPICH_VERSION="3.2a1"
>>>> 262c262
>>>> < $Show $CC $PROFILE_INCPATHS
>>>> -L/bgsys/drivers/V1R2M2/ppc64/spi/lib
>>>> -L/bgsys/drivers/V1R2M2/ppc64/comm/lib
>>>> -L/bgsys/drivers/V1R2M2/ppc64/spi/lib
>>>> -L/bgsys/drivers/V1R2M2/ppc64/comm/lib "${allargs[@]}" -I$includedir
>>>> ---
>>>>> $Show $CC $PROFILE_INCPATHS -L/bgsys/drivers/V1R2M2/ppc64/spi/lib -L/bgsys/drivers/V1R2M2/ppc64/comm/lib "${allargs[@]}" -I$includedir
>>>> 265c265
>>>> < $Show $CC $PROFILE_INCPATHS
>>>> -L/bgsys/drivers/V1R2M2/ppc64/spi/lib
>>>> -L/bgsys/drivers/V1R2M2/ppc64/comm/lib
>>>> -L/bgsys/drivers/V1R2M2/ppc64/spi/lib
>>>> -L/bgsys/drivers/V1R2M2/ppc64/comm/lib "${allargs[@]}" -I$includedir
>>>> -L$libdir $PROFILE_PRELIB $PROFILE_FOO $rpath_flags -lmpi
>>>> $PROFILE_POSTLIB -lpami-gcc -lpthread -lSPI -lSPI_cnk -lrt -lstdc++
>>>> ---
>>>>> $Show $CC $PROFILE_INCPATHS -L/bgsys/drivers/V1R2M2/ppc64/spi/lib -L/bgsys/drivers/V1R2M2/ppc64/comm/lib "${allargs[@]}" -I$includedir -L$libdir $PROFILE_PRELIB $PROFILE_FOO $rpath_flags -lmpi $PROFILE_POSTLIB
>>>>
>>>>
>>>> ------------------------------
>>>>
>>>> Message: 2
>>>> Date: Wed, 17 Sep 2014 00:26:05 -0500
>>>> From: Milind Chabbi <Milind.Chabbi at rice.edu>
>>>> To: mpich-discuss at mcs.anl.gov
>>>> Subject: [mpich-discuss] MPI log via MPE on CRAY XC30 machine
>>>> Message-ID:
>>>> <CAMmz+Y=vvO5vkwyXaKeGg1BKB+Z7zbktZJiwU3rkMjAh8Z058Q at mail.gmail.com>
>>>> Content-Type: text/plain; charset=UTF-8
>>>>
>>>> I am trying to gather MPI logs on CRAY XC30 (Edison machine at NERSC.)
>>>> I built MPE 2-1.3 (ftp://ftp.mcs.anl.gov/pub/mpi/mpe/mpe2.tar.gz) with
>>>> the following configure command:
>>>>
>>>> ./configure MPI_CC=cc F77=ftn MPI_F77=ftn --prefix=/XXXXX/mpe2-1.3.0-install
>>>>
>>>> I compiled a simple application with the following command:
>>>> /XXXX/mpe2-1.3.0-install/bin/mpecc test1.cpp -mpilog
>>>>
>>>> The code compiled fine, but the execution did not generate any log files.
>>>>
>>>> I am trying to generate logs files of MPI calls to view with Jumpshot
>>>> on programs compiled on Cray XC30. Can you suggest the steps needed to
>>>> get this working?
>>>>
>>>> Thanks
>>>> -Milind
>>>>
>>>>
>>>> ------------------------------
>>>>
>>>> Message: 3
>>>> Date: Wed, 17 Sep 2014 08:41:00 +0200
>>>> From: Bob Ilgner <bobilgner at gmail.com>
>>>> To: discuss at mpich.org
>>>> Subject: [mpich-discuss] Passwords on small cluster
>>>> Message-ID:
>>>> <CAKv15b_xROGRhPzxU3ZXka2KiC2-xz8+Vr1DHc=NYFHE-fQ6MA at mail.gmail.com>
>>>> Content-Type: text/plain; charset="utf-8"
>>>>
>>>> Dear all,
>>>>
>>>>
>>>> I am trying to run my mpi job on a small cluster with 5 nodes. When I run
>>>>
>>>> mpirun -n 5 --host node01,node02,node03,node04,node05 ./hesp
>>>>
>>>> the system requests a password for node01.
>>>>
>>>> if I run the job only on node05 then no pasword is requested and the job
>>>> runs OK Is there some way I can include a password in the host file, or
>>>> otherwise ?
>>>>
>>>> regards.
>>>> -------------- next part --------------
>>>> An HTML attachment was scrubbed...
>>>> URL: <http://lists.mpich.org/pipermail/discuss/attachments/20140917/04ab8446/attachment-0001.html>
>>>>
>>>> ------------------------------
>>>>
>>>> Message: 4
>>>> Date: Wed, 17 Sep 2014 13:00:32 +0200
>>>> From: Reuti <reuti at staff.uni-marburg.de>
>>>> To: discuss at mpich.org
>>>> Subject: Re: [mpich-discuss] Passwords on small cluster
>>>> Message-ID:
>>>> <CBCC63B9-F266-4B59-8961-EFB22FEFD635 at staff.uni-marburg.de>
>>>> Content-Type: text/plain; charset=us-ascii
>>>>
>>>> Hi,
>>>>
>>>> Am 17.09.2014 um 08:41 schrieb Bob Ilgner:
>>>>
>>>>> I am trying to run my mpi job on a small cluster with 5 nodes. When I run
>>>>>
>>>>> mpirun -n 5 --host node01,node02,node03,node04,node05 ./hesp
>>>>>
>>>>> the system requests a password for node01.
>>>>>
>>>>> if I run the job only on node05 then no pasword is requested and the job runs OK Is there some way I can include a password in the host file, or otherwise ?
>>>>
>>>> You will have to set up some kind of passwordless access, either by a passphraseless SSH-key (if you are the only user), or hostbased authentication (to make the setup one time for all users).
>>>>
>>>> https://www.open-mpi.org/faq/?category=rsh#ssh-keys (although this page is from the Open MPI site, the constraints are the same as in MPICH)
>>>>
>>>> or:
>>>>
>>>> https://arc.liv.ac.uk/SGE/howto/hostbased-ssh.html
>>>>
>>>> -- Reuti
>>>>
>>>> PS: You could also use an SSH-agent http://www.unixwiz.net/techtips/ssh-agent-forwarding.html which will answer all further requests for the passphrase after you entered it one time.
>>>>
>>>> ------------------------------
>>>>
>>>> Message: 5
>>>> Date: Wed, 17 Sep 2014 11:20:50 +0000
>>>> From: "Balaji, Pavan" <balaji at anl.gov>
>>>> To: "discuss at mpich.org" <discuss at mpich.org>
>>>> Subject: Re: [mpich-discuss] MPI log via MPE on CRAY XC30 machine
>>>> Message-ID: <77BB388D-E452-48B5-89C2-DA16D773F2CA at anl.gov>
>>>> Content-Type: text/plain; charset="utf-8"
>>>>
>>>> Milind,
>>>>
>>>> Did you try this link?
>>>>
>>>> http://wiki.mpich.org/mpich/index.php/MPE_by_example
>>>>
>>>> ? Pavan
>>>>
>>>> On Sep 17, 2014, at 12:26 AM, Milind Chabbi <milind.chabbi at rice.edu> wrote:
>>>>
>>>>> I am trying to gather MPI logs on CRAY XC30 (Edison machine at NERSC.)
>>>>> I built MPE 2-1.3 (ftp://ftp.mcs.anl.gov/pub/mpi/mpe/mpe2.tar.gz) with
>>>>> the following configure command:
>>>>>
>>>>> ./configure MPI_CC=cc F77=ftn MPI_F77=ftn --prefix=/XXXXX/mpe2-1.3.0-install
>>>>>
>>>>> I compiled a simple application with the following command:
>>>>> /XXXX/mpe2-1.3.0-install/bin/mpecc test1.cpp -mpilog
>>>>>
>>>>> The code compiled fine, but the execution did not generate any log files.
>>>>>
>>>>> I am trying to generate logs files of MPI calls to view with Jumpshot
>>>>> on programs compiled on Cray XC30. Can you suggest the steps needed to
>>>>> get this working?
>>>>>
>>>>> Thanks
>>>>> -Milind
>>>>> _______________________________________________
>>>>> discuss mailing list discuss at mpich.org
>>>>> To manage subscription options or unsubscribe:
>>>>> https://lists.mpich.org/mailman/listinfo/discuss
>>>>
>>>> --
>>>> Pavan Balaji ??
>>>> http://www.mcs.anl.gov/~balaji
>>>>
>>>>
>>>> ------------------------------
>>>>
>>>> Message: 6
>>>> Date: Wed, 17 Sep 2014 10:39:35 -0500
>>>> From: Miao Li <rockymountai at gmail.com>
>>>> To: mpich-discuss at mcs.anl.gov
>>>> Subject: [mpich-discuss] GFORTRAN on MinGW doesn't link
>>>> Message-ID:
>>>> <CAKOfFceOwHjAvvpWe5+WPnWm9-Bjn6iXCcsNGbXtFBcuHZbGVA at mail.gmail.com>
>>>> Content-Type: text/plain; charset=UTF-8
>>>>
>>>> Hello, Folks
>>>>
>>>> Sorry to bug you guys with this but I am sure there are tons of people
>>>> have encountered this before, I am creating a MPI program with MPICH-2
>>>> and gfortran on Windows 8 64 with MinGW, but for some reason the
>>>> MPICH-2 can't be linked and errors are:
>>>>
>>>> hello_mpi.o:hello_mpi.f90:(.text+0x10): undefined reference to `mpi_init_'
>>>> hello_mpi.o:hello_mpi.f90:(.text+0x2a): undefined reference to `mpi_comm_size_'
>>>> hello_mpi.o:hello_mpi.f90:(.text+0x44): undefined reference to `mpi_comm_rank_'
>>>> hello_mpi.o:hello_mpi.f90:(.text+0x54): undefined reference to `mpi_wtime_'
>>>> hello_mpi.o:hello_mpi.f90:(.text+0x6bd): undefined reference to `mpi_wtime_'
>>>> hello_mpi.o:hello_mpi.f90:(.text+0x7f7): undefined reference to `mpi_finalize_'
>>>> c:/users/<myid>/program_files/mingw/bin/../lib/gcc/mingw32/4.8.1/../../../../mingw32/bin/ld.exe:
>>>> C:\Users\<myid>\AppData\L
>>>> ocal\Temp\cckYDcnb.o: bad reloc address 0x20 in section `.eh_frame'
>>>> c:/users/<myid>/program_files/mingw/bin/../lib/gcc/mingw32/4.8.1/../../../../mingw32/bin/ld.exe:
>>>> final link failed: Inval
>>>> id operation
>>>> collect2.exe: error: ld returned 1 exit status
>>>>
>>>> This is just a "hello world" program and I followed the instructions
>>>> in the README.winbin.rtf file
>>>>
>>>> "
>>>>
>>>> 2) add ?I?mpich2\include
>>>>
>>>> 3) add ?L?mpich2\lib
>>>>
>>>> "
>>>>
>>>> Some people believe that the "-lmpi" option should be used at the very
>>>> end of command, I did that but doesn't help.
>>>>
>>>> I even tried compiling without any makefile but just a single command like:
>>>>
>>>>> gfortran.exe -I"C:\Program Files\MPICH2\include" hello_mpi.f90 -L"C:\Program Files\MPICH2\lib" -lmpi
>>>>
>>>> But still it doesn't work for me.
>>>>
>>>> Did any of you guys have encountered this before?
>>>>
>>>> I really look forward your response, any inputs are highly appreciated!!!
>>>>
>>>> Thank you so much!
>>>>
>>>> Best Regard
>>>>
>>>> NOTE:
>>>>
>>>> Here is my simple makefile:
>>>>
>>>> F90 = gfortran
>>>> MPI_DIR = /c/Program\ Files/MPICH2
>>>> MPI_LIB_DIR = $(MPI_DIR)/lib
>>>> MPI_LIB_INCLUDE = $(MPI_DIR)/include
>>>> MPI_LIB = -L$(MPI_LIB_DIR) -lmpi
>>>> MPI_INCLUDE = -I$(MPI_LIB_INCLUDE)
>>>> SRC = hello_mpi.f90
>>>> OBJ = $(SRC:.f90=.o)
>>>> EXEC = hello
>>>> $(EXEC): $(OBJ)
>>>> $(F90) -o $(EXEC) $(OBJ) $(MPI_LIB)
>>>> $(OBJ) : $(SRC)
>>>> $(F90) $(MPI_INCLUDE) -c $<
>>>> clean:
>>>> rm *.o
>>>>
>>>>
>>>> ------------------------------
>>>>
>>>> Message: 7
>>>> Date: Wed, 17 Sep 2014 10:43:04 -0500
>>>> From: Miao Li <rockymountai at gmail.com>
>>>> To: discuss at mpich.org
>>>> Subject: [mpich-discuss] GFORTRAN on MinGW doesn't link to MPICH-2
>>>> Message-ID:
>>>> <CAKOfFceNJnTYnzcWQgq9_qwJvpotgk8eroN=Oq--4Me-LJiG=w at mail.gmail.com>
>>>> Content-Type: text/plain; charset=UTF-8
>>>>
>>>> Hello, Folks
>>>>
>>>> Sorry to bug you guys with this but I am sure there are tons of people
>>>> have encountered this before, I am creating a MPI program with MPICH-2
>>>> and gfortran on Windows 8 64 with MinGW, but for some reason the
>>>> MPICH-2 can't be linked and errors are:
>>>>
>>>> hello_mpi.o:hello_mpi.f90:(.text+0x10): undefined reference to `mpi_init_'
>>>> hello_mpi.o:hello_mpi.f90:(.text+0x2a): undefined reference to `mpi_comm_size_'
>>>> hello_mpi.o:hello_mpi.f90:(.text+0x44): undefined reference to `mpi_comm_rank_'
>>>> hello_mpi.o:hello_mpi.f90:(.text+0x54): undefined reference to `mpi_wtime_'
>>>> hello_mpi.o:hello_mpi.f90:(.text+0x6bd): undefined reference to `mpi_wtime_'
>>>> hello_mpi.o:hello_mpi.f90:(.text+0x7f7): undefined reference to `mpi_finalize_'
>>>> c:/users/<myid>/program_files/mingw/bin/../lib/gcc/mingw32/4.8.1/../../../../mingw32/bin/ld.exe:
>>>> C:\Users\<myid>\AppData\L
>>>> ocal\Temp\cckYDcnb.o: bad reloc address 0x20 in section `.eh_frame'
>>>> c:/users/<myid>/program_files/mingw/bin/../lib/gcc/mingw32/4.8.1/../../../../mingw32/bin/ld.exe:
>>>> final link failed: Inval
>>>> id operation
>>>> collect2.exe: error: ld returned 1 exit status
>>>>
>>>> This is just a "hello world" program and I followed the instructions
>>>> in the README.winbin.rtf file
>>>>
>>>> "
>>>>
>>>> 2) add ?I?mpich2\include
>>>>
>>>> 3) add ?L?mpich2\lib
>>>>
>>>> "
>>>>
>>>> Some people believe that the "-lmpi" option should be used at the very
>>>> end of command, I did that but doesn't help.
>>>>
>>>> I even tried compiling without any makefile but just a single command like:
>>>>
>>>>> gfortran.exe -I"C:\Program Files\MPICH2\include" hello_mpi.f90 -L"C:\Program Files\MPICH2\lib" -lmpi
>>>>
>>>> But still it doesn't work for me.
>>>>
>>>> Did any of you guys have encountered this before?
>>>>
>>>> I really look forward your response, any inputs are highly appreciated!!!
>>>>
>>>> Thank you so much!
>>>>
>>>> Best Regard
>>>>
>>>> NOTE:
>>>>
>>>> Here is my simple makefile:
>>>>
>>>> F90 = gfortran
>>>> MPI_DIR = /c/Program\ Files/MPICH2
>>>> MPI_LIB_DIR = $(MPI_DIR)/lib
>>>> MPI_LIB_INCLUDE = $(MPI_DIR)/include
>>>> MPI_LIB = -L$(MPI_LIB_DIR) -lmpi
>>>> MPI_INCLUDE = -I$(MPI_LIB_INCLUDE)
>>>> SRC = hello_mpi.f90
>>>> OBJ = $(SRC:.f90=.o)
>>>> EXEC = hello
>>>> $(EXEC): $(OBJ)
>>>> $(F90) -o $(EXEC) $(OBJ) $(MPI_LIB)
>>>> $(OBJ) : $(SRC)
>>>> $(F90) $(MPI_INCLUDE) -c $<
>>>> clean:
>>>> rm *.o
>>>>
>>>>
>>>> ------------------------------
>>>>
>>>> Message: 8
>>>> Date: Wed, 17 Sep 2014 15:45:07 +0000
>>>> From: "Bland, Wesley B." <wbland at anl.gov>
>>>> To: "discuss at mpich.org" <discuss at mpich.org>
>>>> Cc: "mpich-discuss at mcs.anl.gov" <mpich-discuss at mcs.anl.gov>
>>>> Subject: Re: [mpich-discuss] GFORTRAN on MinGW doesn't link
>>>> Message-ID: <667114D6-5B30-4F87-8AD4-857793E47DFA at anl.gov>
>>>> Content-Type: text/plain; charset="utf-8"
>>>>
>>>> Unfortunately, we haven't supported Windows since MPICH version 1.4.1p1. You can find out more at the FAQ page: http://wiki.mpich.org/mpich/index.php/Frequently_Asked_Questions#Q:_Why_can.27t_I_build_MPICH_on_Windows_anymore.3F
>>>>
>>>> Thanks,
>>>> Wesley
>>>>
>>>>> On Sep 17, 2014, at 10:39 AM, Miao Li <rockymountai at gmail.com> wrote:
>>>>>
>>>>> Hello, Folks
>>>>>
>>>>> Sorry to bug you guys with this but I am sure there are tons of people
>>>>> have encountered this before, I am creating a MPI program with MPICH-2
>>>>> and gfortran on Windows 8 64 with MinGW, but for some reason the
>>>>> MPICH-2 can't be linked and errors are:
>>>>>
>>>>> hello_mpi.o:hello_mpi.f90:(.text+0x10): undefined reference to `mpi_init_'
>>>>> hello_mpi.o:hello_mpi.f90:(.text+0x2a): undefined reference to `mpi_comm_size_'
>>>>> hello_mpi.o:hello_mpi.f90:(.text+0x44): undefined reference to `mpi_comm_rank_'
>>>>> hello_mpi.o:hello_mpi.f90:(.text+0x54): undefined reference to `mpi_wtime_'
>>>>> hello_mpi.o:hello_mpi.f90:(.text+0x6bd): undefined reference to `mpi_wtime_'
>>>>> hello_mpi.o:hello_mpi.f90:(.text+0x7f7): undefined reference to `mpi_finalize_'
>>>>> c:/users/<myid>/program_files/mingw/bin/../lib/gcc/mingw32/4.8.1/../../../../mingw32/bin/ld.exe:
>>>>> C:\Users\<myid>\AppData\L
>>>>> ocal\Temp\cckYDcnb.o: bad reloc address 0x20 in section `.eh_frame'
>>>>> c:/users/<myid>/program_files/mingw/bin/../lib/gcc/mingw32/4.8.1/../../../../mingw32/bin/ld.exe:
>>>>> final link failed: Inval
>>>>> id operation
>>>>> collect2.exe: error: ld returned 1 exit status
>>>>>
>>>>> This is just a "hello world" program and I followed the instructions
>>>>> in the README.winbin.rtf file
>>>>>
>>>>> "
>>>>>
>>>>> 2) add ?I?mpich2\include
>>>>>
>>>>> 3) add ?L?mpich2\lib
>>>>>
>>>>> "
>>>>>
>>>>> Some people believe that the "-lmpi" option should be used at the very
>>>>> end of command, I did that but doesn't help.
>>>>>
>>>>> I even tried compiling without any makefile but just a single command like:
>>>>>
>>>>>> gfortran.exe -I"C:\Program Files\MPICH2\include" hello_mpi.f90 -L"C:\Program Files\MPICH2\lib" -lmpi
>>>>>
>>>>> But still it doesn't work for me.
>>>>>
>>>>> Did any of you guys have encountered this before?
>>>>>
>>>>> I really look forward your response, any inputs are highly appreciated!!!
>>>>>
>>>>> Thank you so much!
>>>>>
>>>>> Best Regard
>>>>>
>>>>> NOTE:
>>>>>
>>>>> Here is my simple makefile:
>>>>>
>>>>> F90 = gfortran
>>>>> MPI_DIR = /c/Program\ Files/MPICH2
>>>>> MPI_LIB_DIR = $(MPI_DIR)/lib
>>>>> MPI_LIB_INCLUDE = $(MPI_DIR)/include
>>>>> MPI_LIB = -L$(MPI_LIB_DIR) -lmpi
>>>>> MPI_INCLUDE = -I$(MPI_LIB_INCLUDE)
>>>>> SRC = hello_mpi.f90
>>>>> OBJ = $(SRC:.f90=.o)
>>>>> EXEC = hello
>>>>> $(EXEC): $(OBJ)
>>>>> $(F90) -o $(EXEC) $(OBJ) $(MPI_LIB)
>>>>> $(OBJ) : $(SRC)
>>>>> $(F90) $(MPI_INCLUDE) -c $<
>>>>> clean:
>>>>> rm *.o
>>>>> _______________________________________________
>>>>> discuss mailing list discuss at mpich.org
>>>>> To manage subscription options or unsubscribe:
>>>>> https://lists.mpich.org/mailman/listinfo/discuss
>>>>
>>>>
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>>>>
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>>>>
>>>> End of discuss Digest, Vol 23, Issue 34
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>>
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