[mpich-discuss] mpif.h
Kenneth Raffenetti
raffenet at mcs.anl.gov
Sun Sep 14 20:16:43 CDT 2014
Based on the comments in the Makefile, it looks like you need to set
USE_MPI and USE_MPIF90 to "on" and set FORT to "gfortran".
Ken
On 09/14/2014 02:35 PM, fereshteh komijani wrote:
> thanks for your reply
> in attach there is COAWST make file,
> i become so appreciate if you help me
> cheers
> fereshte
>
> On Sun, Sep 14, 2014 at 1:40 AM, Gustavo Correa <gus at ldeo.columbia.edu
> <mailto:gus at ldeo.columbia.edu>> wrote:
>
> Hi Fereshteh
>
> <guess>
> The model probably comes with a Makefile,
> or a configuration script, where you can choose
> the compiler (which presumably you chose as F77 or FC=mpif90, which
> is a good choice,
> not gfortran, which is not so good a choice).
> It may also have a INCLUDE variable where you can add the
> location of your mpif.h file.
> Something like this:
>
> INCLUDE= [whatever is already there]
> -I/home/fkomijani/program_install/mpich-3.0.4/include
>
>
> Normally mpif90 is able to locate the mpif.h include file and all
> needed mpi libraries as well,
> which is a big advantage over the barebones compiler (gfortran), as
> Ken and Junchao said.
> However, I've seen makefiles and build scripts that go a long way to
> strip off or override that capability,
> by redefining the compiler to be the one underlying the mpif90
> wrapper (i.e go back to
> gfortran in your case), which is not a very good idea but happens.
>
> It is hard to tell exactly what is going on not knowing the
> Makefile, configure script,
> or the model code.
> Unfortunately the COAWST model is not readily available to download
> and check, requires the developer permission.
> If you post the Makefile or configure script things may become a
> little clearer.
>
> </guess>
>
> My two cents,
> Gus Correa
>
> On Sep 13, 2014, at 10:23 AM, fereshteh komijani wrote:
>
> > After compiling my model (coawst) it gives me following
> > error :
> >
> > mod_parallel.f90:17: Error: Can't open included file
> > 'mpif.h'
> >
> > coaws's developer tell me :
> >
> > *check your environment and see if the location of
> > mpif.h is in your
> > INCLUDE list*.
> >
> > But I don't know what is its mean? Where and how I can
> > do that? Does
> > environment mean .bashrc?
>
> On Sep 13, 2014, at 10:23 AM, fereshteh komijani wrote:
>
> > thanks so much for your attention
> > i will check in again
> > cheers
> > fereshte
> >
> > On Sat, Sep 13, 2014 at 6:30 PM, Junchao Zhang
> <jczhang at mcs.anl.gov <mailto:jczhang at mcs.anl.gov>> wrote:
> > As you can see, hello.f90 contains
> > include 'mpif.h'
> > and mpif90 found it and correctly compiled the code.
> >
> > So, mpich installation is correct. You need to double check your
> code and compilation commands.
> >
> > --Junchao Zhang
> >
> > On Sat, Sep 13, 2014 at 8:41 AM, fereshteh komijani
> <fereshtehkomijani at gmail.com <mailto:fereshtehkomijani at gmail.com>>
> wrote:
> > i have created hello.F90 and after compiling, it gives
> >
> > fkomijani at fk1:~/program_install/COAWST$ mpif90 -v -o hello hello.F90
> > mpif90 for MPICH version 3.0.4
> > Driving: gfortran -v -o hello hello.F90
> -I/home/fkomijani/program_install/mpich-3.0.4/include
> -I/home/fkomijani/program_install/mpich-3.0.4/include
> -L/home/fkomijani/program_install/mpich-3.0.4/lib -lmpichf90 -lmpich
> -lopa -lmpl -lrt -lpthread -l gfortran -l m -shared-libgcc
> > Using built-in specs.
> > COLLECT_GCC=gfortran
> > COLLECT_LTO_WRAPPER=/usr/lib/gcc/i686-linux-gnu/4.6/lto-wrapper
> > Target: i686-linux-gnu
> > Configured with: ../src/configure -v
> --with-pkgversion='Ubuntu/Linaro 4.6.3-1ubuntu5'
> --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs
> --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr
> --program-suffix=-4.6 --enable-shared --enable-linker-build-id
> --with-system-zlib --libexecdir=/usr/lib --without-included-gettext
> --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6
> --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu
> --enable-libstdcxx-debug --enable-libstdcxx-time=yes
> --enable-gnu-unique-object --enable-plugin --enable-objc-gc
> --enable-targets=all --disable-werror --with-arch-32=i686
> --with-tune=generic --enable-checking=release --build=i686-linux-gnu
> --host=i686-linux-gnu --target=i686-linux-gnu
> > Thread model: posix
> > gcc version 4.6.3 (Ubuntu/Linaro 4.6.3-1ubuntu5)
> > COLLECT_GCC_OPTIONS='-v' '-o' 'hello' '-I'
> '/home/fkomijani/program_install/mpich-3.0.4/include' '-I'
> '/home/fkomijani/program_install/mpich-3.0.4/include'
> '-L/home/fkomijani/program_install/mpich-3.0.4/lib' '-shared-libgcc'
> '-mtune=generic' '-march=i686'
> > /usr/lib/gcc/i686-linux-gnu/4.6/f951 hello.F90
> -cpp=/tmp/ccgJjtSb.f90 -quiet -v -I
> /home/fkomijani/program_install/mpich-3.0.4/include -I
> /home/fkomijani/program_install/mpich-3.0.4/include -imultilib .
> -imultiarch i386-linux-gnu hello.F90 -quiet -dumpbase hello.F90
> -mtune=generic -march=i686 -auxbase hello -version
> -fintrinsic-modules-path /usr/lib/gcc/i686-linux-gnu/4.6/finclude -o
> /tmp/ccV5Pu7p.s
> > GNU Fortran (Ubuntu/Linaro 4.6.3-1ubuntu5) version 4.6.3
> (i686-linux-gnu)
> > compiled by GNU C version 4.6.3, GMP version 5.0.2, MPFR
> version 3.1.0-p3, MPC version 0.9
> > GGC heuristics: --param ggc-min-expand=100 --param
> ggc-min-heapsize=131072
> > ignoring nonexistent directory "/usr/local/include/i386-linux-gnu"
> > ignoring nonexistent directory
> "/usr/lib/gcc/i686-linux-gnu/4.6/../../../../i686-linux-gnu/include"
> > ignoring duplicate directory
> "/home/fkomijani/program_install/mpich-3.0.4/include"
> > #include "..." search starts here:
> > #include <...> search starts here:
> > /home/fkomijani/program_install/mpich-3.0.4/include
> > /usr/lib/gcc/i686-linux-gnu/4.6/finclude
> > /usr/lib/gcc/i686-linux-gnu/4.6/include
> > /usr/local/include
> > /usr/lib/gcc/i686-linux-gnu/4.6/include-fixed
> > /usr/include/i386-linux-gnu
> > /usr/include
> > End of search list.
> > GNU Fortran (Ubuntu/Linaro 4.6.3-1ubuntu5) version 4.6.3
> (i686-linux-gnu)
> > compiled by GNU C version 4.6.3, GMP version 5.0.2, MPFR
> version 3.1.0-p3, MPC version 0.9
> > GGC heuristics: --param ggc-min-expand=100 --param
> ggc-min-heapsize=131072
> > COLLECT_GCC_OPTIONS='-v' '-o' 'hello' '-I'
> '/home/fkomijani/program_install/mpich-3.0.4/include' '-I'
> '/home/fkomijani/program_install/mpich-3.0.4/include'
> '-L/home/fkomijani/program_install/mpich-3.0.4/lib' '-shared-libgcc'
> '-mtune=generic' '-march=i686'
> > as --32 -o /tmp/ccPO4WoE.o /tmp/ccV5Pu7p.s
> > Reading specs from /usr/lib/gcc/i686-linux-gnu/4.6/libgfortran.spec
> > rename spec lib to liborig
> > COLLECT_GCC_OPTIONS='-v' '-o' 'hello' '-I'
> '/home/fkomijani/program_install/mpich-3.0.4/include' '-I'
> '/home/fkomijani/program_install/mpich-3.0.4/include'
> '-L/home/fkomijani/program_install/mpich-3.0.4/lib' '-shared-libgcc'
> '-mtune=generic' '-march=i686'
> >
> COMPILER_PATH=/usr/lib/gcc/i686-linux-gnu/4.6/:/usr/lib/gcc/i686-linux-gnu/4.6/:/usr/lib/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/4.6/:/usr/lib/gcc/i686-linux-gnu/
> >
> LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/4.6/:/usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/4.6/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/4.6/../../../:/lib/:/usr/lib/
> > COLLECT_GCC_OPTIONS='-v' '-o' 'hello' '-I'
> '/home/fkomijani/program_install/mpich-3.0.4/include' '-I'
> '/home/fkomijani/program_install/mpich-3.0.4/include'
> '-L/home/fkomijani/program_install/mpich-3.0.4/lib' '-shared-libgcc'
> '-mtune=generic' '-march=i686'
> > /usr/lib/gcc/i686-linux-gnu/4.6/collect2 --sysroot=/ --build-id
> --no-add-needed --as-needed --eh-frame-hdr -m elf_i386
> --hash-style=gnu -dynamic-linker /lib/ld-linux.so.2 -z relro -o
> hello /usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/crt1.o
> /usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/crti.o
> /usr/lib/gcc/i686-linux-gnu/4.6/crtbegin.o
> -L/home/fkomijani/program_install/mpich-3.0.4/lib
> -L/usr/lib/gcc/i686-linux-gnu/4.6
> -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu
> -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../../lib
> -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu
> -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/4.6/../../..
> /tmp/ccPO4WoE.o -lmpichf90 -lmpich -lopa -lmpl -lrt -lpthread
> -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc
> -lgcc_s -lgcc /usr/lib/gcc/i686-linux-gnu/4.6/crtend.o
> /usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/crtn.o
> >
> >
> > On Sat, Sep 13, 2014 at 5:28 PM, Junchao Zhang
> <jczhang at mcs.anl.gov <mailto:jczhang at mcs.anl.gov>> wrote:
> > "gfortran: error: hello.F90: No such file or directory"
> > You need to create hello.F90 as I said in the previous email.
> >
> > "mpif90 -v -o hello hello.F90 ./coawst.bash"
> > Also, do not add ./coawst.bash
> >
> >
> >
> > --Junchao Zhang
> >
> > On Sat, Sep 13, 2014 at 7:15 AM, fereshteh komijani
> <fereshtehkomijani at gmail.com <mailto:fereshtehkomijani at gmail.com>>
> wrote:
> >
> > fkomijani at fk1:~/program_install/COAWST$ mpif90 -v -o hello
> hello.F90 ./coawst.bash
> > mpif90 for MPICH version 3.0.4
> > Driving: gfortran -v -o hello hello.F90 ./coawst.bash
> -I/home/fkomijani/program_install/mpich-3.0.4/include
> -I/home/fkomijani/program_install/mpich-3.0.4/include
> -L/home/fkomijani/program_install/mpich-3.0.4/lib -lmpichf90 -lmpich
> -lopa -lmpl -lrt -lpthread -l gfortran -l m -shared-libgcc
> > gfortran: error: hello.F90: No such file or directory
> > Using built-in specs.
> > COLLECT_GCC=gfortran
> > COLLECT_LTO_WRAPPER=/usr/lib/gcc/i686-linux-gnu/4.6/lto-wrapper
> > Target: i686-linux-gnu
> > Configured with: ../src/configure -v
> --with-pkgversion='Ubuntu/Linaro 4.6.3-1ubuntu5'
> --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs
> --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr
> --program-suffix=-4.6 --enable-shared --enable-linker-build-id
> --with-system-zlib --libexecdir=/usr/lib --without-included-gettext
> --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6
> --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu
> --enable-libstdcxx-debug --enable-libstdcxx-time=yes
> --enable-gnu-unique-object --enable-plugin --enable-objc-gc
> --enable-targets=all --disable-werror --with-arch-32=i686
> --with-tune=generic --enable-checking=release --build=i686-linux-gnu
> --host=i686-linux-gnu --target=i686-linux-gnu
> > Thread model: posix
> > gcc version 4.6.3 (Ubuntu/Linaro 4.6.3-1ubuntu5)
> >
> >
> > On Sat, Sep 13, 2014 at 4:33 PM, Junchao Zhang
> <jczhang at mcs.anl.gov <mailto:jczhang at mcs.anl.gov>> wrote:
> > That is strange.
> > Could you compile the following program with "mpif90 -v -o hello
> hello.F90" and paste the output?
> >
> > ! hello.F90
> > program main
> > implicit none
> > include 'mpif.h'
> > integer :: ierr
> >
> > call MPI_Init(ierr)
> > call MPI_Finalize(ierr)
> > end program
> >
> >
> > --Junchao Zhang
> >
> > On Sat, Sep 13, 2014 at 6:24 AM, fereshteh komijani
> <fereshtehkomijani at gmail.com <mailto:fereshtehkomijani at gmail.com>>
> wrote:
> > sorry that is my fault, it is mpif.h
> >
> > it seems that COAWST model is searching it, in -I/user/include
> directory not in
> > /home/fkomijani/program_install/mpich-3.0.4/include.
> > so how can i set mentined directory in system environment?
> >
> > On Sat, Sep 13, 2014 at 3:45 PM, Junchao Zhang
> <jczhang at mcs.anl.gov <mailto:jczhang at mcs.anl.gov>> wrote:
> > The file name should be mpif.h, but not mpih.f.
> >
> > On Sep 13, 2014 1:45 AM, "fereshteh komijani"
> <fereshtehkomijani at gmail.com <mailto:fereshtehkomijani at gmail.com>>
> wrote:
> > yes, /home/fkomijani/program_install/mpich-3.0.4/include contains
> mpih.f
> >
> > On Sat, Sep 13, 2014 at 11:07 AM, Kenneth Raffenetti
> <raffenet at mcs.anl.gov <mailto:raffenet at mcs.anl.gov>> wrote:
> > If you 'ls /home/fkomijani/program_install/mpich-3.0.4/include'
> does it contain an mpif.h file? If not, your MPICH installation
> might be bad.
> >
> > On 09/13/2014 03:24 PM, fereshteh komijani wrote:
> > gfortran -I/home/fkomijani/program_install/mpich-3.0.4/include
> > -I/home/fkomijani/program_install/mpich-3.0.4/include
> > -L/home/fkomijani/program_install/mpich-3.0.4/lib -lmpichf90 -lmpich
> > -lopa -lmpl -lrt -lpthread
> >
> >
> > On Sat, Sep 13, 2014 at 10:52 AM, Kenneth Raffenetti
> > <raffenet at mcs.anl.gov <mailto:raffenet at mcs.anl.gov>
> <mailto:raffenet at mcs.anl.gov <mailto:raffenet at mcs.anl.gov>>> wrote:
> >
> > What is the output from 'mpif90 -show'?
> >
> > On 09/13/2014 03:19 PM, fereshteh komijani wrote:
> >
> > dear Kenneth Raffenetti
> > i am using mpif90 compiler.
> > if it is, why i have got that error?
> >
> > On Sat, Sep 13, 2014 at 10:47 AM, Kenneth Raffenetti
> > <raffenet at mcs.anl.gov <mailto:raffenet at mcs.anl.gov>
> <mailto:raffenet at mcs.anl.gov <mailto:raffenet at mcs.anl.gov>>
> > <mailto:raffenet at mcs.anl.gov
> <mailto:raffenet at mcs.anl.gov> <mailto:raffenet at mcs.anl.gov
> <mailto:raffenet at mcs.anl.gov>>>> wrote:
> >
> > Are you using the mpif77 or mpif90 compiler wrappers to
> > build your
> > program? They will automatically add the location of
> mpif.h
> > to your
> > include path.
> >
> > On 09/13/2014 02:56 PM, fereshteh komijani wrote:
> >
> > Dear friends
> >
> > recently I have installed mpich 3.0.4 in my system
> > (Ubuntu).
> >
> > After compiling my model (coawst) it gives me
> following
> > error :
> >
> > mod_parallel.f90:17: Error: Can't open included file
> > 'mpif.h'
> >
> > coaws's developer tell me :
> >
> > *check your environment and see if the location of
> > mpif.h is in your
> > INCLUDE list*.
> >
> > But I don't know what is its mean? Where and how
> I can
> > do that? Does
> > environment mean .bashrc?
> >
> > many thanks for any reply
> >
> > fereshteh
> >
> >
> >
> > --
> > ***Angel***
> > *__*
> >
> >
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