[mpich-discuss] mpif.h
fereshteh komijani
fereshtehkomijani at gmail.com
Mon Sep 15 01:52:56 CDT 2014
Dear friend
i would like to offer my heartfelt appreciate for your kindly attention.
my problem solved base on your suggestion.
many thanks again
cheers
fereshte
On Mon, Sep 15, 2014 at 6:28 AM, Gustavo Correa <gus at ldeo.columbia.edu>
wrote:
>
> On Sep 14, 2014, at 9:16 PM, Kenneth Raffenetti wrote:
>
> > Based on the comments in the Makefile, it looks like you need to set
> USE_MPI and USE_MPIF90 to "on" and set FORT to "gfortran".
> >
> > Ken
> >
>
> Agreed.
>
> Also, besides Ken's suggestion, note also these comments in the makefile:
>
> # This makefile is designed to work only with GNU Make version 3.80 or :::
> # higher. It can be used in any architecture provided that there is a :::
> # machine/compiler rules file in the "Compilers" subdirectory. You :::
> # may need to modify the rules file to specify the correct path for :::
> # the NetCDF and ARPACK libraries. The ARPACK library is only used in :::
> # the Generalized Stability Theory analysis and Laczos algorithm. :::
>
> You may need to look for a Linux/gfortran directory/file (or similar).
> There may be additional items that you may need to edit there.
> I would guess one would be the path to your mpif90,
> maybe the INCLUDE macro mentioned in your original email,
> and if you're using input/output files in NetCDF format, the location of
> your NetCDF library.
>
> Anyway, these are mostly guesses, not knowing anything about this model
> (which seems
> to be moslty based on ROMS.)
>
> I hope it helps,
> Gus Correa
>
> > On 09/14/2014 02:35 PM, fereshteh komijani wrote:
> >> thanks for your reply
> >> in attach there is COAWST make file,
> >> i become so appreciate if you help me
> >> cheers
> >> fereshte
> >>
> >> On Sun, Sep 14, 2014 at 1:40 AM, Gustavo Correa <gus at ldeo.columbia.edu
> >> <mailto:gus at ldeo.columbia.edu>> wrote:
> >>
> >> Hi Fereshteh
> >>
> >> <guess>
> >> The model probably comes with a Makefile,
> >> or a configuration script, where you can choose
> >> the compiler (which presumably you chose as F77 or FC=mpif90, which
> >> is a good choice,
> >> not gfortran, which is not so good a choice).
> >> It may also have a INCLUDE variable where you can add the
> >> location of your mpif.h file.
> >> Something like this:
> >>
> >> INCLUDE= [whatever is already there]
> >> -I/home/fkomijani/program_install/mpich-3.0.4/include
> >>
> >>
> >> Normally mpif90 is able to locate the mpif.h include file and all
> >> needed mpi libraries as well,
> >> which is a big advantage over the barebones compiler (gfortran), as
> >> Ken and Junchao said.
> >> However, I've seen makefiles and build scripts that go a long way to
> >> strip off or override that capability,
> >> by redefining the compiler to be the one underlying the mpif90
> >> wrapper (i.e go back to
> >> gfortran in your case), which is not a very good idea but happens.
> >>
> >> It is hard to tell exactly what is going on not knowing the
> >> Makefile, configure script,
> >> or the model code.
> >> Unfortunately the COAWST model is not readily available to download
> >> and check, requires the developer permission.
> >> If you post the Makefile or configure script things may become a
> >> little clearer.
> >>
> >> </guess>
> >>
> >> My two cents,
> >> Gus Correa
> >>
> >> On Sep 13, 2014, at 10:23 AM, fereshteh komijani wrote:
> >>
> >> > After compiling my model (coawst) it gives me
> following
> >> > error :
> >> >
> >> > mod_parallel.f90:17: Error: Can't open included
> file
> >> > 'mpif.h'
> >> >
> >> > coaws's developer tell me :
> >> >
> >> > *check your environment and see if the location of
> >> > mpif.h is in your
> >> > INCLUDE list*.
> >> >
> >> > But I don't know what is its mean? Where and how
> I can
> >> > do that? Does
> >> > environment mean .bashrc?
> >>
> >> On Sep 13, 2014, at 10:23 AM, fereshteh komijani wrote:
> >>
> >> > thanks so much for your attention
> >> > i will check in again
> >> > cheers
> >> > fereshte
> >> >
> >> > On Sat, Sep 13, 2014 at 6:30 PM, Junchao Zhang
> >> <jczhang at mcs.anl.gov <mailto:jczhang at mcs.anl.gov>> wrote:
> >> > As you can see, hello.f90 contains
> >> > include 'mpif.h'
> >> > and mpif90 found it and correctly compiled the code.
> >> >
> >> > So, mpich installation is correct. You need to double check your
> >> code and compilation commands.
> >> >
> >> > --Junchao Zhang
> >> >
> >> > On Sat, Sep 13, 2014 at 8:41 AM, fereshteh komijani
> >> <fereshtehkomijani at gmail.com <mailto:fereshtehkomijani at gmail.com>>
> >> wrote:
> >> > i have created hello.F90 and after compiling, it gives
> >> >
> >> > fkomijani at fk1:~/program_install/COAWST$ mpif90 -v -o hello
> hello.F90
> >> > mpif90 for MPICH version 3.0.4
> >> > Driving: gfortran -v -o hello hello.F90
> >> -I/home/fkomijani/program_install/mpich-3.0.4/include
> >> -I/home/fkomijani/program_install/mpich-3.0.4/include
> >> -L/home/fkomijani/program_install/mpich-3.0.4/lib -lmpichf90 -lmpich
> >> -lopa -lmpl -lrt -lpthread -l gfortran -l m -shared-libgcc
> >> > Using built-in specs.
> >> > COLLECT_GCC=gfortran
> >> > COLLECT_LTO_WRAPPER=/usr/lib/gcc/i686-linux-gnu/4.6/lto-wrapper
> >> > Target: i686-linux-gnu
> >> > Configured with: ../src/configure -v
> >> --with-pkgversion='Ubuntu/Linaro 4.6.3-1ubuntu5'
> >> --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs
> >> --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr
> >> --program-suffix=-4.6 --enable-shared --enable-linker-build-id
> >> --with-system-zlib --libexecdir=/usr/lib --without-included-gettext
> >> --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6
> >> --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu
> >> --enable-libstdcxx-debug --enable-libstdcxx-time=yes
> >> --enable-gnu-unique-object --enable-plugin --enable-objc-gc
> >> --enable-targets=all --disable-werror --with-arch-32=i686
> >> --with-tune=generic --enable-checking=release --build=i686-linux-gnu
> >> --host=i686-linux-gnu --target=i686-linux-gnu
> >> > Thread model: posix
> >> > gcc version 4.6.3 (Ubuntu/Linaro 4.6.3-1ubuntu5)
> >> > COLLECT_GCC_OPTIONS='-v' '-o' 'hello' '-I'
> >> '/home/fkomijani/program_install/mpich-3.0.4/include' '-I'
> >> '/home/fkomijani/program_install/mpich-3.0.4/include'
> >> '-L/home/fkomijani/program_install/mpich-3.0.4/lib' '-shared-libgcc'
> >> '-mtune=generic' '-march=i686'
> >> > /usr/lib/gcc/i686-linux-gnu/4.6/f951 hello.F90
> >> -cpp=/tmp/ccgJjtSb.f90 -quiet -v -I
> >> /home/fkomijani/program_install/mpich-3.0.4/include -I
> >> /home/fkomijani/program_install/mpich-3.0.4/include -imultilib .
> >> -imultiarch i386-linux-gnu hello.F90 -quiet -dumpbase hello.F90
> >> -mtune=generic -march=i686 -auxbase hello -version
> >> -fintrinsic-modules-path /usr/lib/gcc/i686-linux-gnu/4.6/finclude -o
> >> /tmp/ccV5Pu7p.s
> >> > GNU Fortran (Ubuntu/Linaro 4.6.3-1ubuntu5) version 4.6.3
> >> (i686-linux-gnu)
> >> > compiled by GNU C version 4.6.3, GMP version 5.0.2, MPFR
> >> version 3.1.0-p3, MPC version 0.9
> >> > GGC heuristics: --param ggc-min-expand=100 --param
> >> ggc-min-heapsize=131072
> >> > ignoring nonexistent directory "/usr/local/include/i386-linux-gnu"
> >> > ignoring nonexistent directory
> >> "/usr/lib/gcc/i686-linux-gnu/4.6/../../../../i686-linux-gnu/include"
> >> > ignoring duplicate directory
> >> "/home/fkomijani/program_install/mpich-3.0.4/include"
> >> > #include "..." search starts here:
> >> > #include <...> search starts here:
> >> > /home/fkomijani/program_install/mpich-3.0.4/include
> >> > /usr/lib/gcc/i686-linux-gnu/4.6/finclude
> >> > /usr/lib/gcc/i686-linux-gnu/4.6/include
> >> > /usr/local/include
> >> > /usr/lib/gcc/i686-linux-gnu/4.6/include-fixed
> >> > /usr/include/i386-linux-gnu
> >> > /usr/include
> >> > End of search list.
> >> > GNU Fortran (Ubuntu/Linaro 4.6.3-1ubuntu5) version 4.6.3
> >> (i686-linux-gnu)
> >> > compiled by GNU C version 4.6.3, GMP version 5.0.2, MPFR
> >> version 3.1.0-p3, MPC version 0.9
> >> > GGC heuristics: --param ggc-min-expand=100 --param
> >> ggc-min-heapsize=131072
> >> > COLLECT_GCC_OPTIONS='-v' '-o' 'hello' '-I'
> >> '/home/fkomijani/program_install/mpich-3.0.4/include' '-I'
> >> '/home/fkomijani/program_install/mpich-3.0.4/include'
> >> '-L/home/fkomijani/program_install/mpich-3.0.4/lib' '-shared-libgcc'
> >> '-mtune=generic' '-march=i686'
> >> > as --32 -o /tmp/ccPO4WoE.o /tmp/ccV5Pu7p.s
> >> > Reading specs from
> /usr/lib/gcc/i686-linux-gnu/4.6/libgfortran.spec
> >> > rename spec lib to liborig
> >> > COLLECT_GCC_OPTIONS='-v' '-o' 'hello' '-I'
> >> '/home/fkomijani/program_install/mpich-3.0.4/include' '-I'
> >> '/home/fkomijani/program_install/mpich-3.0.4/include'
> >> '-L/home/fkomijani/program_install/mpich-3.0.4/lib' '-shared-libgcc'
> >> '-mtune=generic' '-march=i686'
> >> >
> >>
> COMPILER_PATH=/usr/lib/gcc/i686-linux-gnu/4.6/:/usr/lib/gcc/i686-linux-gnu/4.6/:/usr/lib/gcc/i686-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/4.6/:/usr/lib/gcc/i686-linux-gnu/
> >> >
> >>
> LIBRARY_PATH=/usr/lib/gcc/i686-linux-gnu/4.6/:/usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/:/usr/lib/gcc/i686-linux-gnu/4.6/../../../../lib/:/lib/i386-linux-gnu/:/lib/../lib/:/usr/lib/i386-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/i686-linux-gnu/4.6/../../../:/lib/:/usr/lib/
> >> > COLLECT_GCC_OPTIONS='-v' '-o' 'hello' '-I'
> >> '/home/fkomijani/program_install/mpich-3.0.4/include' '-I'
> >> '/home/fkomijani/program_install/mpich-3.0.4/include'
> >> '-L/home/fkomijani/program_install/mpich-3.0.4/lib' '-shared-libgcc'
> >> '-mtune=generic' '-march=i686'
> >> > /usr/lib/gcc/i686-linux-gnu/4.6/collect2 --sysroot=/ --build-id
> >> --no-add-needed --as-needed --eh-frame-hdr -m elf_i386
> >> --hash-style=gnu -dynamic-linker /lib/ld-linux.so.2 -z relro -o
> >> hello /usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/crt1.o
> >> /usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/crti.o
> >> /usr/lib/gcc/i686-linux-gnu/4.6/crtbegin.o
> >> -L/home/fkomijani/program_install/mpich-3.0.4/lib
> >> -L/usr/lib/gcc/i686-linux-gnu/4.6
> >> -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu
> >> -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../../lib
> >> -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu
> >> -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/4.6/../../..
> >> /tmp/ccPO4WoE.o -lmpichf90 -lmpich -lopa -lmpl -lrt -lpthread
> >> -lgfortran -lm -lgcc_s -lgcc -lquadmath -lm -lgcc_s -lgcc -lc
> >> -lgcc_s -lgcc /usr/lib/gcc/i686-linux-gnu/4.6/crtend.o
> >> /usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/crtn.o
> >> >
> >> >
> >> > On Sat, Sep 13, 2014 at 5:28 PM, Junchao Zhang
> >> <jczhang at mcs.anl.gov <mailto:jczhang at mcs.anl.gov>> wrote:
> >> > "gfortran: error: hello.F90: No such file or directory"
> >> > You need to create hello.F90 as I said in the previous email.
> >> >
> >> > "mpif90 -v -o hello hello.F90 ./coawst.bash"
> >> > Also, do not add ./coawst.bash
> >> >
> >> >
> >> >
> >> > --Junchao Zhang
> >> >
> >> > On Sat, Sep 13, 2014 at 7:15 AM, fereshteh komijani
> >> <fereshtehkomijani at gmail.com <mailto:fereshtehkomijani at gmail.com>>
> >> wrote:
> >> >
> >> > fkomijani at fk1:~/program_install/COAWST$ mpif90 -v -o hello
> >> hello.F90 ./coawst.bash
> >> > mpif90 for MPICH version 3.0.4
> >> > Driving: gfortran -v -o hello hello.F90 ./coawst.bash
> >> -I/home/fkomijani/program_install/mpich-3.0.4/include
> >> -I/home/fkomijani/program_install/mpich-3.0.4/include
> >> -L/home/fkomijani/program_install/mpich-3.0.4/lib -lmpichf90 -lmpich
> >> -lopa -lmpl -lrt -lpthread -l gfortran -l m -shared-libgcc
> >> > gfortran: error: hello.F90: No such file or directory
> >> > Using built-in specs.
> >> > COLLECT_GCC=gfortran
> >> > COLLECT_LTO_WRAPPER=/usr/lib/gcc/i686-linux-gnu/4.6/lto-wrapper
> >> > Target: i686-linux-gnu
> >> > Configured with: ../src/configure -v
> >> --with-pkgversion='Ubuntu/Linaro 4.6.3-1ubuntu5'
> >> --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs
> >> --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr
> >> --program-suffix=-4.6 --enable-shared --enable-linker-build-id
> >> --with-system-zlib --libexecdir=/usr/lib --without-included-gettext
> >> --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6
> >> --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu
> >> --enable-libstdcxx-debug --enable-libstdcxx-time=yes
> >> --enable-gnu-unique-object --enable-plugin --enable-objc-gc
> >> --enable-targets=all --disable-werror --with-arch-32=i686
> >> --with-tune=generic --enable-checking=release --build=i686-linux-gnu
> >> --host=i686-linux-gnu --target=i686-linux-gnu
> >> > Thread model: posix
> >> > gcc version 4.6.3 (Ubuntu/Linaro 4.6.3-1ubuntu5)
> >> >
> >> >
> >> > On Sat, Sep 13, 2014 at 4:33 PM, Junchao Zhang
> >> <jczhang at mcs.anl.gov <mailto:jczhang at mcs.anl.gov>> wrote:
> >> > That is strange.
> >> > Could you compile the following program with "mpif90 -v -o hello
> >> hello.F90" and paste the output?
> >> >
> >> > ! hello.F90
> >> > program main
> >> > implicit none
> >> > include 'mpif.h'
> >> > integer :: ierr
> >> >
> >> > call MPI_Init(ierr)
> >> > call MPI_Finalize(ierr)
> >> > end program
> >> >
> >> >
> >> > --Junchao Zhang
> >> >
> >> > On Sat, Sep 13, 2014 at 6:24 AM, fereshteh komijani
> >> <fereshtehkomijani at gmail.com <mailto:fereshtehkomijani at gmail.com>>
> >> wrote:
> >> > sorry that is my fault, it is mpif.h
> >> >
> >> > it seems that COAWST model is searching it, in -I/user/include
> >> directory not in
> >> > /home/fkomijani/program_install/mpich-3.0.4/include.
> >> > so how can i set mentined directory in system environment?
> >> >
> >> > On Sat, Sep 13, 2014 at 3:45 PM, Junchao Zhang
> >> <jczhang at mcs.anl.gov <mailto:jczhang at mcs.anl.gov>> wrote:
> >> > The file name should be mpif.h, but not mpih.f.
> >> >
> >> > On Sep 13, 2014 1:45 AM, "fereshteh komijani"
> >> <fereshtehkomijani at gmail.com <mailto:fereshtehkomijani at gmail.com>>
> >> wrote:
> >> > yes, /home/fkomijani/program_install/mpich-3.0.4/include contains
> >> mpih.f
> >> >
> >> > On Sat, Sep 13, 2014 at 11:07 AM, Kenneth Raffenetti
> >> <raffenet at mcs.anl.gov <mailto:raffenet at mcs.anl.gov>> wrote:
> >> > If you 'ls /home/fkomijani/program_install/mpich-3.0.4/include'
> >> does it contain an mpif.h file? If not, your MPICH installation
> >> might be bad.
> >> >
> >> > On 09/13/2014 03:24 PM, fereshteh komijani wrote:
> >> > gfortran -I/home/fkomijani/program_install/mpich-3.0.4/include
> >> > -I/home/fkomijani/program_install/mpich-3.0.4/include
> >> > -L/home/fkomijani/program_install/mpich-3.0.4/lib -lmpichf90
> -lmpich
> >> > -lopa -lmpl -lrt -lpthread
> >> >
> >> >
> >> > On Sat, Sep 13, 2014 at 10:52 AM, Kenneth Raffenetti
> >> > <raffenet at mcs.anl.gov <mailto:raffenet at mcs.anl.gov>
> >> <mailto:raffenet at mcs.anl.gov <mailto:raffenet at mcs.anl.gov>>> wrote:
> >> >
> >> > What is the output from 'mpif90 -show'?
> >> >
> >> > On 09/13/2014 03:19 PM, fereshteh komijani wrote:
> >> >
> >> > dear Kenneth Raffenetti
> >> > i am using mpif90 compiler.
> >> > if it is, why i have got that error?
> >> >
> >> > On Sat, Sep 13, 2014 at 10:47 AM, Kenneth Raffenetti
> >> > <raffenet at mcs.anl.gov <mailto:raffenet at mcs.anl.gov>
> >> <mailto:raffenet at mcs.anl.gov <mailto:raffenet at mcs.anl.gov>>
> >> > <mailto:raffenet at mcs.anl.gov
> >> <mailto:raffenet at mcs.anl.gov> <mailto:raffenet at mcs.anl.gov
> >> <mailto:raffenet at mcs.anl.gov>>>> wrote:
> >> >
> >> > Are you using the mpif77 or mpif90 compiler wrappers
> to
> >> > build your
> >> > program? They will automatically add the location of
> >> mpif.h
> >> > to your
> >> > include path.
> >> >
> >> > On 09/13/2014 02:56 PM, fereshteh komijani wrote:
> >> >
> >> > Dear friends
> >> >
> >> > recently I have installed mpich 3.0.4 in my
> system
> >> > (Ubuntu).
> >> >
> >> > After compiling my model (coawst) it gives me
> >> following
> >> > error :
> >> >
> >> > mod_parallel.f90:17: Error: Can't open included
> file
> >> > 'mpif.h'
> >> >
> >> > coaws's developer tell me :
> >> >
> >> > *check your environment and see if the location
> of
> >> > mpif.h is in your
> >> > INCLUDE list*.
> >> >
> >> > But I don't know what is its mean? Where and how
> >> I can
> >> > do that? Does
> >> > environment mean .bashrc?
> >> >
> >> > many thanks for any reply
> >> >
> >> > fereshteh
> >> >
> >> >
> >> >
> >> > --
> >> > ***Angel***
> >> > *__*
> >> >
> >> >
> >> >
> ___________________________________________________
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> >> >
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> >> >
> >> >
> >> >
> >> > --
> >> > ***Angel***
> >> > *__*
> >> >
> >> >
> >> > _________________________________________________
> >> > discuss mailing list discuss at mpich.org
> >> <mailto:discuss at mpich.org> <mailto:discuss at mpich.org
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> >> >
> >> > _________________________________________________
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> >> >
> >> >
> >> >
> >> >
> >> > --
> >> > ***Angel***
> >> > *__*
> >> >
> >> >
> >> > _______________________________________________
> >> > discuss mailing list discuss at mpich.org <mailto:discuss at mpich.org>
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> >> >
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> >> >
> >> >
> >> >
> >> > --
> >> > **Angel**
> >> >
> >> >
> >> >
> >> > _______________________________________________
> >> > discuss mailing list discuss at mpich.org <mailto:discuss at mpich.org>
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> >> >
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> >> >
> >> >
> >> > --
> >> > **Angel**
> >> >
> >> >
> >> >
> >> > _______________________________________________
> >> > discuss mailing list discuss at mpich.org <mailto:discuss at mpich.org>
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