[mpich-discuss] discuss Digest, Vol 34, Issue 4
Jeff Hammond
jeff.science at gmail.com
Wed Aug 12 11:53:29 CDT 2015
1) Please change the subject to something appropriate when responding to
email digests. I have violated this recommendation here to preserve thread
continuity.
2) Do not post code to the list that does not compile. Using GCC with
CFLAGS="-std=c99 -Wall -Werror" is recommended.
Jeff
On Wed, Aug 12, 2015 at 8:06 AM, Kenneth Raffenetti <raffenet at mcs.anl.gov>
wrote:
> There were a number of bugs in your program. I've attached a new version
> that ran fine on my machine. Can you confirm?
>
> Ken
>
>
> On 08/12/2015 01:25 AM, Riddhi Modi wrote:
>
>> My program:
>>
>> #include<stdio.h>
>> #include"mpi.h"
>>
>> int main(int argc,char **argv)
>> {
>> int total_procs,rank,namelen,i;
>> int n=10,m=11;
>> char processor_name[MPI_MAX_PROCESSOR_NAME];
>> char filename[256];
>> file *fp1,*fp2;
>> MPI_Status status;
>> MPI_Init(&argc,&argv);
>> MPI_Comm_size(MPI_COMM_WORLD,&total_procs);
>> MPI_Comm_rank(MPI_COMM_WORLD,&rank);
>> MPI_Get_Processor_name(Processor name,&namelen);
>> fprintf(stdout,"Process %d of %d is on %s
>> \n",rank,total_procs,processor_name);
>> fflush(stdout);
>> if(rank==0)
>> {
>> MPI_Send(&n,1,MPI_INT,1,0,MPI_COMM_WORLD);
>> fp1=fopen("n.xx","w");
>> fprintf(fp1,"%d",n);
>> }
>>
>>
>> if(rank==1)
>> {
>> MPI_Recv(&n,1,MPI_INT,0.0,MPI_COMM_WORLD,&status);
>> n=11;
>> fp2=fopen("n.yy","w");
>> fprintf(fp2,"%d",n);
>> fclose(fp2);
>> }
>> MPI_Finalize();
>> return 0;
>> }
>>
>>
>> to execute the program i wrote : mpiexec -n 2 -hosts master,node1 ./sim
>>
>> but it gives me error like assertion failed in file
>> src/mpid/ch3/channels/nemesis/netmod/tcp/socksm.c at line 597 :
>> hdr.datalen!=0
>>
>> internal ABORT - process 1 .
>>
>>
>> how to solve this error ??
>>
>>
>>
>> On Tue, Aug 11, 2015 at 9:54 PM, <discuss-request at mpich.org
>> <mailto:discuss-request at mpich.org>> wrote:
>>
>> Send discuss mailing list submissions to
>> discuss at mpich.org <mailto:discuss at mpich.org>
>>
>> To subscribe or unsubscribe via the World Wide Web, visit
>> https://lists.mpich.org/mailman/listinfo/discuss
>> or, via email, send a message with subject or body 'help' to
>> discuss-request at mpich.org <mailto:discuss-request at mpich.org>
>>
>> You can reach the person managing the list at
>> discuss-owner at mpich.org <mailto:discuss-owner at mpich.org>
>>
>> When replying, please edit your Subject line so it is more specific
>> than "Re: Contents of discuss digest..."
>>
>>
>> Today's Topics:
>>
>> 1. Re: [MPICH compilation with NAG Fortran compiler]
>> (Thakur, Rajeev)
>> 2. Re: Problems with running make (Balaji, Pavan)
>> 3. static building of mpich (Doha Ehab)
>> 4. Re: static building of mpich (Balaji, Pavan)
>> 5. Error : Assertion Failed (Riddhi Modi)
>> 6. Re: Error : Assertion Failed (Balaji, Pavan)
>> 7. Re: static building of mpich (Doha Ehab)
>>
>>
>> ----------------------------------------------------------------------
>>
>> Message: 1
>> Date: Thu, 6 Aug 2015 15:15:32 +0000
>> From: "Thakur, Rajeev" <thakur at mcs.anl.gov <mailto:thakur at mcs.anl.gov
>> >>
>> To: "discuss at mpich.org <mailto:discuss at mpich.org>"
>> <discuss at mpich.org <mailto:discuss at mpich.org>>
>> Subject: Re: [mpich-discuss] [MPICH compilation with NAG Fortran
>> compiler]
>> Message-ID: <93932738-717A-466B-96ED-F9A398DD92EE at mcs.anl.gov
>> <mailto:93932738-717A-466B-96ED-F9A398DD92EE at mcs.anl.gov>>
>> Content-Type: text/plain; charset="utf-8"
>>
>> We run nightly tests with the NAG compiler, and they build fine (see
>> the 5th column from the right at
>> http://www.mpich.org/static/cron/tests/). Can you try configuring
>> with just the ?prefix option to see if one of the options is the
>> cause. Shared libraries are built by default.
>>
>> Rajeev
>>
>>
>> > On Aug 6, 2015, at 6:25 AM, Maxim Abalenkov
>> <maxim.abalenkov at gmail.com <mailto:maxim.abalenkov at gmail.com>> wrote:
>> >
>> > Dear Madam or Sir,
>> >
>> > I?m facing a problem trying to compile MPICH with NAG Fortran
>> compiler. The compilation breaks with an unrecognised option
>> ??dynamic lib? error. Please see the make log file called ?m.txt?.
>> >
>> > To configure MPICH version 3.2b4 I?m using the attached configure
>> script. Please see the script for the MPICH configuration options.
>> Configuration and compilation log files called ?c.txt? and ?m.txt?
>> are also attached.
>> >
>> > I would greatly appreciate your help in compiling MPICH with NAG
>> Fortran. Thank you. Have a good day.
>> >
>> > Product name and version: NAG Fortran Compiler Release 6.0
>> (Hibiya) Build 1021
>> > OS: Mac OS X Yosemite 10.10.4 (64-bit)
>> >
>> > ?
>> > Best wishes,
>> > Maxim Abalenkov
>> >
>> >
>> >
>> > _______________________________________________
>> > discuss mailing list discuss at mpich.org <mailto:discuss at mpich.org>
>> > To manage subscription options or unsubscribe:
>> > https://lists.mpich.org/mailman/listinfo/discuss
>> > <mpich-configure-nag.sh><c.txt><m.txt>
>>
>>
>> ------------------------------
>>
>> Message: 2
>> Date: Thu, 6 Aug 2015 15:48:45 +0000
>> From: "Balaji, Pavan" <balaji at anl.gov <mailto:balaji at anl.gov>>
>> To: "discuss at mpich.org <mailto:discuss at mpich.org>"
>> <discuss at mpich.org <mailto:discuss at mpich.org>>
>> Subject: Re: [mpich-discuss] Problems with running make
>> Message-ID: <D355EC24-A2D3-4BDA-85A0-01F76B89D250 at anl.gov
>> <mailto:D355EC24-A2D3-4BDA-85A0-01F76B89D250 at anl.gov>>
>> Content-Type: text/plain; charset="utf-8"
>>
>>
>> Sorry, windows is not supported.
>>
>> -- Pavan
>>
>> From: hirak chatterjee
>> Reply-To: "discuss at mpich.org
>> <mailto:discuss at mpich.org><mailto:discuss at mpich.org
>> <mailto:discuss at mpich.org>>"
>> Date: Thursday, August 6, 2015 at 10:04 AM
>> To: "discuss at mpich.org
>> <mailto:discuss at mpich.org><mailto:discuss at mpich.org
>>
>> <mailto:discuss at mpich.org>>"
>> Subject: [mpich-discuss] Problems with running make
>>
>>
>> Sir,
>> I am working with windows 8 (64 bit). After configuring
>> successfully,following the export step
>>
>> ./configure --prefix=/home/hirak/mpich-install
>>
>> --enable-timer-type=gettimeofday CC="gcc-4" CPP="cpp-4" CXX="g++-4"
>>
>> CXXCPP="cpp-4" 2>&1 | tee c.txt
>>
>> I am getting the error repeatedly
>>
>> function 'MPIX_Grequest_class_allocate' part of alias cycle.
>> The text file is attached herewith.
>> Plz help.
>> Hirak
>>
>> --
>> Hirak Chatterjee<https://www.facebook.com/hirakc1>
>> Research Scholar
>> Department of Chemistry
>> Assam University, Silchar
>> Assam-788011
>> INDIA
>> Phone No: +918486882543 (ASSAM)
>> +919475265107 (WEST BENGAL)
>>
>> -------------- next part --------------
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>> >
>>
>> ------------------------------
>>
>> Message: 3
>> Date: Mon, 10 Aug 2015 03:24:43 +0300
>> From: Doha Ehab <dohaehab at gmail.com <mailto:dohaehab at gmail.com>>
>> To: discuss at mpich.org <mailto:discuss at mpich.org>
>> Subject: [mpich-discuss] static building of mpich
>> Message-ID:
>>
>> <CAEjFr-bJN0OtKha+N+qz83oMSbMfXMOihX2iEFqPWXHg3WLzFg at mail.gmail.com
>> <mailto:
>> CAEjFr-bJN0OtKha%2BN%2Bqz83oMSbMfXMOihX2iEFqPWXHg3WLzFg at mail.gmail.com>>
>>
>> Content-Type: text/plain; charset="utf-8"
>>
>> Hello,
>> i'm trying to cross compile mpich , I have extracted mpich-3.1.3
>> the I
>> created a folder name build inside it . In order to statically build
>> mpich
>> I used the following commands:
>>
>> export
>> CC="/home/doha/buildroot-2015.02/output/host/usr/bin/arm-linux-gcc"
>> export
>> AR="/home/doha/buildroot-2015.02/output/host/usr/bin/arm-linux-ar"
>> export CFLAGS="-march=armv5te -static
>> -I/home/doha/buildroot-2015.02/output/host/usr/include/"
>> export LDFLAGS="-L/home/doha/buildroot-2015.02/output/host/usr/lib/"
>>
>>
>> cc=/home/doha/buildroot-2015.02/output/host/usr/bin/arm-linux-gcc
>> ./configure --prefix=/home/doha/mpich-3.1.3/build/ --host=arm-linux
>> --disable-shared --with-pm=hydra --with-device=ch3:nemesis
>> --disable-fortran
>>
>>
>> but nothing appears in the build folder while it shows no errors on
>> the
>> terminal
>> -------------- next part --------------
>> An HTML attachment was scrubbed...
>> URL:
>> <
>> http://lists.mpich.org/pipermail/discuss/attachments/20150810/f7e08533/attachment-0001.html
>> >
>>
>> ------------------------------
>>
>> Message: 4
>> Date: Mon, 10 Aug 2015 03:13:26 +0000
>> From: "Balaji, Pavan" <balaji at anl.gov <mailto:balaji at anl.gov>>
>> To: "discuss at mpich.org <mailto:discuss at mpich.org>"
>> <discuss at mpich.org <mailto:discuss at mpich.org>>
>> Subject: Re: [mpich-discuss] static building of mpich
>> Message-ID: <61167DA3-6B70-41FD-987C-B0E4823B51FB at anl.gov
>> <mailto:61167DA3-6B70-41FD-987C-B0E4823B51FB at anl.gov>>
>> Content-Type: text/plain; charset="utf-8"
>>
>>
>> Did you do make and make install?
>>
>> -- Pavan
>>
>> From: Doha Ehab
>> Reply-To: "discuss at mpich.org
>> <mailto:discuss at mpich.org><mailto:discuss at mpich.org
>> <mailto:discuss at mpich.org>>"
>> Date: Sunday, August 9, 2015 at 7:24 PM
>> To: "discuss at mpich.org
>> <mailto:discuss at mpich.org><mailto:discuss at mpich.org
>>
>> <mailto:discuss at mpich.org>>"
>> Subject: [mpich-discuss] static building of mpich
>>
>> Hello,
>> i'm trying to cross compile mpich , I have extracted mpich-3.1.3
>> the I created a folder name build inside it . In order to statically
>> build mpich I used the following commands:
>>
>> export
>> CC="/home/doha/buildroot-2015.02/output/host/usr/bin/arm-linux-gcc"
>> export
>> AR="/home/doha/buildroot-2015.02/output/host/usr/bin/arm-linux-ar"
>> export CFLAGS="-march=armv5te -static
>> -I/home/doha/buildroot-2015.02/output/host/usr/include/"
>> export LDFLAGS="-L/home/doha/buildroot-2015.02/output/host/usr/lib/"
>>
>>
>> cc=/home/doha/buildroot-2015.02/output/host/usr/bin/arm-linux-gcc
>> ./configure --prefix=/home/doha/mpich-3.1.3/build/ --host=arm-linux
>> --disable-shared --with-pm=hydra --with-device=ch3:nemesis
>> --disable-fortran
>>
>>
>> but nothing appears in the build folder while it shows no errors on
>> the terminal
>> -------------- next part --------------
>> An HTML attachment was scrubbed...
>> URL:
>> <
>> http://lists.mpich.org/pipermail/discuss/attachments/20150810/e0ba151e/attachment-0001.html
>> >
>>
>> ------------------------------
>>
>> Message: 5
>> Date: Tue, 11 Aug 2015 12:19:29 +0530
>> From: Riddhi Modi <riddhimodi07 at gmail.com
>> <mailto:riddhimodi07 at gmail.com>>
>> To: discuss at mpich.org <mailto:discuss at mpich.org>
>> Subject: [mpich-discuss] Error : Assertion Failed
>> Message-ID:
>>
>> <CAGMiM1FtDLfc1Fgb=k7j+A9LJV7UvrFA7i=Hk-44XCHdzGjU1A at mail.gmail.com
>> <mailto:Hk-44XCHdzGjU1A at mail.gmail.com>>
>> Content-Type: text/plain; charset="utf-8"
>>
>> I have one major problem.I established mpich-3.1.4 cluster on 2
>> machines
>> and run cpi.c program with 2 process which run on 2 different
>> machines.But
>> there is an error like
>>
>> Assertion Failed in file
>> src/mpid/ch3/channels/nemesis/netmod/tcp/socksm.c
>> at line 597: hdr.datalen!=0
>>
>> Internal ABORT -process 1
>>
>> how can i solve this kind of error.??/ any idea??
>> -------------- next part --------------
>> An HTML attachment was scrubbed...
>> URL:
>> <
>> http://lists.mpich.org/pipermail/discuss/attachments/20150811/ac9dfca5/attachment-0001.html
>> >
>>
>> ------------------------------
>>
>> Message: 6
>> Date: Tue, 11 Aug 2015 07:10:50 +0000
>> From: "Balaji, Pavan" <balaji at anl.gov <mailto:balaji at anl.gov>>
>> To: "discuss at mpich.org <mailto:discuss at mpich.org>"
>> <discuss at mpich.org <mailto:discuss at mpich.org>>
>> Subject: Re: [mpich-discuss] Error : Assertion Failed
>> Message-ID: <869418A0-9F44-4423-84BD-ACEDE39264E2 at anl.gov
>> <mailto:869418A0-9F44-4423-84BD-ACEDE39264E2 at anl.gov>>
>> Content-Type: text/plain; charset="utf-8"
>>
>>
>> I don't think we have seen this error before. Can you send us a
>> small program that reproduces this error?
>>
>> -- Pavan
>>
>> From: Riddhi Modi
>> Reply-To: "discuss at mpich.org
>> <mailto:discuss at mpich.org><mailto:discuss at mpich.org
>> <mailto:discuss at mpich.org>>"
>> Date: Tuesday, August 11, 2015 at 1:49 AM
>> To: "discuss at mpich.org
>> <mailto:discuss at mpich.org><mailto:discuss at mpich.org
>> <mailto:discuss at mpich.org>>"
>> Subject: [mpich-discuss] Error : Assertion Failed
>>
>> I have one major problem.I established mpich-3.1.4 cluster on 2
>> machines and run cpi.c program with 2 process which run on 2
>> different machines.But there is an error like
>>
>> Assertion Failed in file
>> src/mpid/ch3/channels/nemesis/netmod/tcp/socksm.c at line 597:
>> hdr.datalen!=0
>>
>> Internal ABORT -process 1
>>
>> how can i solve this kind of error.??/ any idea??
>> -------------- next part --------------
>> An HTML attachment was scrubbed...
>> URL:
>> <
>> http://lists.mpich.org/pipermail/discuss/attachments/20150811/1897d486/attachment-0001.html
>> >
>>
>> ------------------------------
>>
>> Message: 7
>> Date: Tue, 11 Aug 2015 19:24:18 +0300
>> From: Doha Ehab <dohaehab at gmail.com <mailto:dohaehab at gmail.com>>
>> To: discuss at mpich.org <mailto:discuss at mpich.org>
>> Subject: Re: [mpich-discuss] static building of mpich
>> Message-ID:
>>
>> <CAEjFr-aoTMG_igVbRVthsh4YGgLniMF8OdJMj0wfcZRmE8RHMw at mail.gmail.com
>> <mailto:
>> CAEjFr-aoTMG_igVbRVthsh4YGgLniMF8OdJMj0wfcZRmE8RHMw at mail.gmail.com>>
>> Content-Type: text/plain; charset="utf-8"
>>
>> No , but after I did make and make install I checked whether it was
>> statically built using the following command :
>>
>> file bin/mpiexec
>> mpiexec: symbolic link to `mpiexec.hydra'
>>
>> Then I typed
>>
>> file bin/mpiexec.hydrampiexec.hydra: ELF 32-bit LSB executable, Intel
>> 80386, version 1 (SYSV), dynamically linked (uses shared libs), for
>> GNU/Linux 2.6.24,
>> BuildID[sha1]=0xb4510fb70ac8047d9028dbafe2d43848140fe894,
>> not stripped
>>
>> I don't understand why it is dynamically linked and not statically
>> linked
>>
>>
>> On Mon, Aug 10, 2015 at 6:13 AM, Balaji, Pavan <balaji at anl.gov
>> <mailto:balaji at anl.gov>> wrote:
>>
>> >
>> > Did you do make and make install?
>> >
>> > -- Pavan
>> >
>> > From: Doha Ehab
>> > Reply-To: "discuss at mpich.org <mailto:discuss at mpich.org>"
>> > Date: Sunday, August 9, 2015 at 7:24 PM
>> > To: "discuss at mpich.org <mailto:discuss at mpich.org>"
>> > Subject: [mpich-discuss] static building of mpich
>> >
>> > Hello,
>> > i'm trying to cross compile mpich , I have extracted mpich-3.1.3
>> the I
>> > created a folder name build inside it . In order to statically
>> build mpich
>> > I used the following commands:
>> >
>> > export
>> CC="/home/doha/buildroot-2015.02/output/host/usr/bin/arm-linux-gcc"
>> > export
>> AR="/home/doha/buildroot-2015.02/output/host/usr/bin/arm-linux-ar"
>> > export CFLAGS="-march=armv5te -static
>> > -I/home/doha/buildroot-2015.02/output/host/usr/include/"
>> > export
>> LDFLAGS="-L/home/doha/buildroot-2015.02/output/host/usr/lib/"
>> >
>> >
>> > cc=/home/doha/buildroot-2015.02/output/host/usr/bin/arm-linux-gcc
>> > ./configure --prefix=/home/doha/mpich-3.1.3/build/ --host=arm-linux
>> > --disable-shared --with-pm=hydra --with-device=ch3:nemesis
>> > --disable-fortran
>> >
>> >
>> > but nothing appears in the build folder while it shows no errors
>> on the
>> > terminal
>> >
>> > _______________________________________________
>> > discuss mailing list discuss at mpich.org <mailto:discuss at mpich.org>
>> > To manage subscription options or unsubscribe:
>> > https://lists.mpich.org/mailman/listinfo/discuss
>> >
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>>
>> ------------------------------
>>
>> _______________________________________________
>> discuss mailing list
>> discuss at mpich.org <mailto:discuss at mpich.org>
>> https://lists.mpich.org/mailman/listinfo/discuss
>>
>> End of discuss Digest, Vol 34, Issue 4
>> **************************************
>>
>>
>>
>>
>> _______________________________________________
>> discuss mailing list discuss at mpich.org
>> To manage subscription options or unsubscribe:
>> https://lists.mpich.org/mailman/listinfo/discuss
>>
>>
> _______________________________________________
> discuss mailing list discuss at mpich.org
> To manage subscription options or unsubscribe:
> https://lists.mpich.org/mailman/listinfo/discuss
>
--
Jeff Hammond
jeff.science at gmail.com
http://jeffhammond.github.io/
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