[mpich-discuss] static Linking Error

Doha Ehab dohaehab at gmail.com
Wed Dec 2 05:39:26 CST 2015 

Hello ,
 yes NDK cannot find the libc so I had to add it as a static library to the
proj.

Thanks,
Doha

On Mon, Nov 30, 2015 at 6:43 PM, Min Si <msi at il.is.s.u-tokyo.ac.jp> wrote:

> Hi,
>
> Have you tried to compile a simple hello world C program using the same
> options ? It looks like the compiler can not find libc at link time. And
> you may need to change "--static" to "-static"  in the LDFLAGS option.
>
> Min
>
>
> On 11/30/15 7:57 AM, Doha Ehab wrote:
>
> I have retried it using mpich-3.2 and the following command :
>
> ./configure --prefix=/home/doha/mpich-3.2/build/
> CC=/home/doha/buildroot-2015.08.1/output/host/usr/bin/arm-buildroot-linux-uclibcgnueabi-gcc
> CFLAGS="-DHAVE_DEPRECATED_DNS_FUNCS  -march=armv5 -mfpu=vfp  -fPIC   -O3
>  -static" LDFLAGS="--static
>  -L/home/doha/buildroot-2015.08.1/output/host/usr/lib/ " --host=arm-linux
>  --disable-shared --enable-static --with-device=ch3:sock --disable-f77
> --disable-fc --disable-fortran
>
> and I got the following errors
>
> jni/../prebuilt/libmpi.a(lib_libmpi_la-errutil.o):errutil.c:function
> checkValidErrcode: error: undefined reference to 'stderr'
> jni/../prebuilt/libmpi.a(lib_libmpi_la-errutil.o):errutil.c:function
> checkForUserErrcode: error: undefined reference to 'stderr'
> jni/../prebuilt/libmpi.a(lib_libmpi_la-errutil.o):errutil.c:function
> MPIR_Err_preOrPostInit: error: undefined reference to 'stderr'
> jni/../prebuilt/libmpi.a(lib_libmpi_la-errutil.o):errutil.c:function
> MPIR_Err_get_string: error: undefined reference to 'stderr'
> jni/../prebuilt/libmpi.a(lib_libmpi_la-dbg_printf.o):dbg_printf.c:function
> MPIU_dbg_printf: error: undefined reference to 'stdout'
> jni/../prebuilt/libmpi.a(lib_libmpi_la-dbg_printf.o):dbg_printf.c:function
> MPIU_dump_dbg_memlog_to_stdout: error: undefined reference to 'stdout'
> jni/../prebuilt/libmpi.a(lib_libmpi_la-mpid_vc.o):mpid_vc.c:function
> MPIDI_Populate_vc_node_ids: error: undefined reference to '__errno_location'
> jni/../prebuilt/libmpi.a(lib_libmpi_la-mpid_vc.o):mpid_vc.c:function
> MPIDI_Populate_vc_node_ids: error: undefined reference to '__ctype_b'
> jni/../prebuilt/libmpi.a(lib_libmpi_la-mpidi_pg.o):mpidi_pg.c:function
> getConnInfo: error: undefined reference to 'stdout'
> jni/../prebuilt/libmpi.a(lib_libmpi_la-mpidi_pg.o):mpidi_pg.c:function
> MPIDI_PG_Create: error: undefined reference to 'stdout'
> jni/../prebuilt/libmpi.a(lib_libmpi_la-sock.o):sock.c:function
> MPIDU_Socki_event_enqueue.isra.1: error: undefined reference to
> '__errno_location'
> jni/../prebuilt/libmpi.a(lib_libmpi_la-sock.o):sock.c:function
> MPIDU_Socki_wakeup.isra.2: error: undefined reference to '__errno_location'
> jni/../prebuilt/libmpi.a(lib_libmpi_la-sock.o):sock.c:function
> MPIDU_Sock_SetSockBufferSize: error: undefined reference to
> '__errno_location'
> jni/../prebuilt/libmpi.a(mplenv.o):mplenv.c:function MPL_env2range: error:
> undefined reference to '__ctype_b'
> jni/../prebuilt/libmpi.a(mplenv.o):mplenv.c:function MPL_env2int: error:
> undefined reference to '__ctype_b'
> jni/../prebuilt/libmpi.a(lib_libmpi_la-strerror.o):strerror.c:function
> MPIU_Strerror: error: undefined reference to '__xpg_strerror_r'
> jni/../prebuilt/libmpi.a(lib_libmpi_la-ch3u_handle_connection.o):ch3u_handle_connection.c:function
> MPIDI_CH3U_Get_failed_group: error: undefined reference to '__ctype_b'
>
> any suggestions ?
>
>
>
>
> On Mon, Nov 30, 2015 at 3:11 AM, dave <dave at mynatt.biz> wrote:
>
>> Is it possible to upgrade without doing an uninstall of old version, yet
>> still keep setup files?
>>
>> Dave
>> ======================
>>
>>
>> On 11/29/2015 05:52 PM, Balaji, Pavan wrote:
>>
>>> Also, can you please try a newer version of mpich?  mpich2-1.3 was
>>> released before the big bang.  The latest version is mpich-3.2.
>>>
>>>         http://www.mpich.org/downloads/
>>>
>>>    -- Pavan
>>>
>>> On Nov 29, 2015, at 3:26 PM, Min Si < <msi at il.is.s.u-tokyo.ac.jp>
>>>> msi at il.is.s.u-tokyo.ac.jp> wrote:
>>>>
>>>> Hi,
>>>>
>>>> Please try ./configure --prefix=<your installation directory> CC=<your
>>>> compiler> CFLAGS=<your compile flags> LDFLAGS=<your link flags> following
>>>> with other options.
>>>>
>>>> Min
>>>> On 11/29/15 2:22 PM, Doha Ehab wrote:
>>>>
>>>>>
>>>>> On Sun, Nov 29, 2015 at 2:01 PM, Doha Ehab < <dohaehab at gmail.com>
>>>>> dohaehab at gmail.com> wrote:
>>>>> Hello,
>>>>> I used buildroot to statically compile MPICH2-1.3 for ARM devices
>>>>> using the following commands:
>>>>>
>>>>> export CFLAGS="-I/home/doha/buildroot-2015.05/output/host/usr/include/
>>>>> -DHAVE_DEPRECATED_DNS_FUNCS -fPIC -march=armv5 -mfpu=vfp -O3"
>>>>>
>>>>> export LDFLAGS="--static
>>>>> -L/home/doha/buildroot-2015.05/output/host/usr/lib/ -fPIC"
>>>>>
>>>>> cc=/home/doha/buildroot-2015.05/output/host/usr/bin/arm-buildroot-linux-uclibcgnueabi-gcc
>>>>> ./configure --prefix=/home/doha/mpich/build/
>>>>>  --host=arm-linux  --disable-shared --enable-static
>>>>>  --with-device=ch3:sock --disable-f77 --disable-fc
>>>>>
>>>>> when I compile the code using android ndk I get the following error
>>>>>
>>>>> jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function
>>>>> MPIU_Usage_printf: error: undefined reference to 'stdout'
>>>>> jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function
>>>>> MPIU_Error_printf: error: undefined reference to 'stderr'
>>>>> jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function
>>>>> MPIU_Internal_error_printf: error: undefined reference to 'stderr'
>>>>> jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function
>>>>> MPIU_Internal_sys_error_printf: error: undefined reference to 'stderr'
>>>>> jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function
>>>>> MPIU_Msg_printf: error: undefined reference to 'stdout'
>>>>> jni/../prebuilt/libmpich.a(dbg_printf.o):dbg_printf.c:function
>>>>> MPIU_dbg_printf: error: undefined reference to 'stdout'
>>>>> jni/../prebuilt/libmpich.a(dbg_printf.o):dbg_printf.c:function
>>>>> MPIU_dump_dbg_memlog_to_stdout: error: undefined reference to 'stdout'
>>>>> jni/../prebuilt/libmpich.a(mpid_abort.o):mpid_abort.c:function
>>>>> MPID_Abort: error: undefined reference to 'stderr'
>>>>> jni/../prebuilt/libmpich.a(mpid_vc.o):mpid_vc.c:function
>>>>> MPIDI_Populate_vc_node_ids: error: undefined reference to '__errno_location'
>>>>> jni/../prebuilt/libmpich.a(mpid_vc.o):mpid_vc.c:function
>>>>> MPIDI_Populate_vc_node_ids: error: undefined reference to '__ctype_b'
>>>>> jni/../prebuilt/libmpich.a(strerror.o):strerror.c:function
>>>>> MPIU_Strerror: error: undefined reference to '__xpg_strerror_r'
>>>>> jni/../prebuilt/libmpich.a(simple_pmi.o):simple_pmi.c:function
>>>>> accept_one_connection: error: undefined reference to '__errno_location'
>>>>> jni/../prebuilt/libmpich.a(simple_pmi.o):simple_pmi.c:function
>>>>> PMI_Init: error: undefined reference to '__errno_location'
>>>>> jni/../prebuilt/libmpich.a(sock.o):sock.c:function
>>>>> MPIDU_Socki_event_enqueue.isra.1: error: undefined reference to
>>>>> '__errno_location'
>>>>> jni/../prebuilt/libmpl.a(mplenv.o):mplenv.c:function MPL_env2range:
>>>>> error: undefined reference to '__ctype_b'
>>>>> jni/../prebuilt/libmpl.a(mplenv.o):mplenv.c:function MPL_env2int:
>>>>> error: undefined reference to '__ctype_b'
>>>>>   I want to know what I'm missing and why it is not linking properly
>>>>>
>>>>> _______________________________________________
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>>>>>
>>>>>
>>>>>
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