[mpich-discuss] static Linking Error

Min Si msi at il.is.s.u-tokyo.ac.jp
Mon Nov 30 10:43:00 CST 2015


Hi,

Have you tried to compile a simple hello world C program using the same 
options ? It looks like the compiler can not find libc at link time. And 
you may need to change "--static" to "-static"  in the LDFLAGS option.

Min

On 11/30/15 7:57 AM, Doha Ehab wrote:
> I have retried it using mpich-3.2 and the following command :
>
> ./configure --prefix=/home/doha/mpich-3.2/build/ 
> CC=/home/doha/buildroot-2015.08.1/output/host/usr/bin/arm-buildroot-linux-uclibcgnueabi-gcc 
> CFLAGS="-DHAVE_DEPRECATED_DNS_FUNCS  -march=armv5 -mfpu=vfp  -fPIC   
> -O3  -static" LDFLAGS="--static 
>  -L/home/doha/buildroot-2015.08.1/output/host/usr/lib/ " 
> --host=arm-linux  --disable-shared --enable-static 
> --with-device=ch3:sock --disable-f77 --disable-fc --disable-fortran
>
> and I got the following errors
>
> jni/../prebuilt/libmpi.a(lib_libmpi_la-errutil.o):errutil.c:function 
> checkValidErrcode: error: undefined reference to 'stderr'
> jni/../prebuilt/libmpi.a(lib_libmpi_la-errutil.o):errutil.c:function 
> checkForUserErrcode: error: undefined reference to 'stderr'
> jni/../prebuilt/libmpi.a(lib_libmpi_la-errutil.o):errutil.c:function 
> MPIR_Err_preOrPostInit: error: undefined reference to 'stderr'
> jni/../prebuilt/libmpi.a(lib_libmpi_la-errutil.o):errutil.c:function 
> MPIR_Err_get_string: error: undefined reference to 'stderr'
> jni/../prebuilt/libmpi.a(lib_libmpi_la-dbg_printf.o):dbg_printf.c:function 
> MPIU_dbg_printf: error: undefined reference to 'stdout'
> jni/../prebuilt/libmpi.a(lib_libmpi_la-dbg_printf.o):dbg_printf.c:function 
> MPIU_dump_dbg_memlog_to_stdout: error: undefined reference to 'stdout'
> jni/../prebuilt/libmpi.a(lib_libmpi_la-mpid_vc.o):mpid_vc.c:function 
> MPIDI_Populate_vc_node_ids: error: undefined reference to 
> '__errno_location'
> jni/../prebuilt/libmpi.a(lib_libmpi_la-mpid_vc.o):mpid_vc.c:function 
> MPIDI_Populate_vc_node_ids: error: undefined reference to '__ctype_b'
> jni/../prebuilt/libmpi.a(lib_libmpi_la-mpidi_pg.o):mpidi_pg.c:function 
> getConnInfo: error: undefined reference to 'stdout'
> jni/../prebuilt/libmpi.a(lib_libmpi_la-mpidi_pg.o):mpidi_pg.c:function 
> MPIDI_PG_Create: error: undefined reference to 'stdout'
> jni/../prebuilt/libmpi.a(lib_libmpi_la-sock.o):sock.c:function 
> MPIDU_Socki_event_enqueue.isra.1: error: undefined reference to 
> '__errno_location'
> jni/../prebuilt/libmpi.a(lib_libmpi_la-sock.o):sock.c:function 
> MPIDU_Socki_wakeup.isra.2: error: undefined reference to 
> '__errno_location'
> jni/../prebuilt/libmpi.a(lib_libmpi_la-sock.o):sock.c:function 
> MPIDU_Sock_SetSockBufferSize: error: undefined reference to 
> '__errno_location'
> jni/../prebuilt/libmpi.a(mplenv.o):mplenv.c:function MPL_env2range: 
> error: undefined reference to '__ctype_b'
> jni/../prebuilt/libmpi.a(mplenv.o):mplenv.c:function MPL_env2int: 
> error: undefined reference to '__ctype_b'
> jni/../prebuilt/libmpi.a(lib_libmpi_la-strerror.o):strerror.c:function 
> MPIU_Strerror: error: undefined reference to '__xpg_strerror_r'
> jni/../prebuilt/libmpi.a(lib_libmpi_la-ch3u_handle_connection.o):ch3u_handle_connection.c:function 
> MPIDI_CH3U_Get_failed_group: error: undefined reference to '__ctype_b'
>
> any suggestions ?
>
>
>
>
> On Mon, Nov 30, 2015 at 3:11 AM, dave <dave at mynatt.biz 
> <mailto:dave at mynatt.biz>> wrote:
>
>     Is it possible to upgrade without doing an uninstall of old
>     version, yet still keep setup files?
>
>     Dave
>     ======================
>
>
>     On 11/29/2015 05:52 PM, Balaji, Pavan wrote:
>
>         Also, can you please try a newer version of mpich? mpich2-1.3
>         was released before the big bang.  The latest version is
>         mpich-3.2.
>
>         http://www.mpich.org/downloads/
>
>            -- Pavan
>
>             On Nov 29, 2015, at 3:26 PM, Min Si
>             <msi at il.is.s.u-tokyo.ac.jp
>             <mailto:msi at il.is.s.u-tokyo.ac.jp>> wrote:
>
>             Hi,
>
>             Please try ./configure --prefix=<your installation
>             directory> CC=<your compiler> CFLAGS=<your compile flags>
>             LDFLAGS=<your link flags> following with other options.
>
>             Min
>             On 11/29/15 2:22 PM, Doha Ehab wrote:
>
>
>                 On Sun, Nov 29, 2015 at 2:01 PM, Doha Ehab
>                 <dohaehab at gmail.com <mailto:dohaehab at gmail.com>> wrote:
>                 Hello,
>                 I used buildroot to statically compile MPICH2-1.3 for
>                 ARM devices using the following commands:
>
>                 export
>                 CFLAGS="-I/home/doha/buildroot-2015.05/output/host/usr/include/
>                 -DHAVE_DEPRECATED_DNS_FUNCS -fPIC -march=armv5
>                 -mfpu=vfp -O3"
>
>                 export LDFLAGS="--static
>                 -L/home/doha/buildroot-2015.05/output/host/usr/lib/ -fPIC"
>
>                 cc=/home/doha/buildroot-2015.05/output/host/usr/bin/arm-buildroot-linux-uclibcgnueabi-gcc
>                 ./configure --prefix=/home/doha/mpich/build/          
>                    --host=arm-linux  --disable-shared --enable-static 
>                  --with-device=ch3:sock --disable-f77 --disable-fc
>
>                 when I compile the code using android ndk I get the
>                 following error
>
>                 jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function
>                 MPIU_Usage_printf: error: undefined reference to 'stdout'
>                 jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function
>                 MPIU_Error_printf: error: undefined reference to 'stderr'
>                 jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function
>                 MPIU_Internal_error_printf: error: undefined reference
>                 to 'stderr'
>                 jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function
>                 MPIU_Internal_sys_error_printf: error: undefined
>                 reference to 'stderr'
>                 jni/../prebuilt/libmpich.a(msgprint.o):msgprint.c:function
>                 MPIU_Msg_printf: error: undefined reference to 'stdout'
>                 jni/../prebuilt/libmpich.a(dbg_printf.o):dbg_printf.c:function
>                 MPIU_dbg_printf: error: undefined reference to 'stdout'
>                 jni/../prebuilt/libmpich.a(dbg_printf.o):dbg_printf.c:function
>                 MPIU_dump_dbg_memlog_to_stdout: error: undefined
>                 reference to 'stdout'
>                 jni/../prebuilt/libmpich.a(mpid_abort.o):mpid_abort.c:function
>                 MPID_Abort: error: undefined reference to 'stderr'
>                 jni/../prebuilt/libmpich.a(mpid_vc.o):mpid_vc.c:function
>                 MPIDI_Populate_vc_node_ids: error: undefined reference
>                 to '__errno_location'
>                 jni/../prebuilt/libmpich.a(mpid_vc.o):mpid_vc.c:function
>                 MPIDI_Populate_vc_node_ids: error: undefined reference
>                 to '__ctype_b'
>                 jni/../prebuilt/libmpich.a(strerror.o):strerror.c:function
>                 MPIU_Strerror: error: undefined reference to
>                 '__xpg_strerror_r'
>                 jni/../prebuilt/libmpich.a(simple_pmi.o):simple_pmi.c:function
>                 accept_one_connection: error: undefined reference to
>                 '__errno_location'
>                 jni/../prebuilt/libmpich.a(simple_pmi.o):simple_pmi.c:function
>                 PMI_Init: error: undefined reference to '__errno_location'
>                 jni/../prebuilt/libmpich.a(sock.o):sock.c:function
>                 MPIDU_Socki_event_enqueue.isra.1: error: undefined
>                 reference to '__errno_location'
>                 jni/../prebuilt/libmpl.a(mplenv.o):mplenv.c:function
>                 MPL_env2range: error: undefined reference to '__ctype_b'
>                 jni/../prebuilt/libmpl.a(mplenv.o):mplenv.c:function
>                 MPL_env2int: error: undefined reference to '__ctype_b'
>                   I want to know what I'm missing and why it is not
>                 linking properly
>
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