[mpich-discuss] Error buildingmpich-master-v3.2-88-gbbb40df74d46
Siegmar Gross
Siegmar.Gross at informatik.hs-fulda.de
Fri Jan 15 06:45:43 CST 2016
Hi Halim, hi Rob,
I've checked out version 77592165aa3, but at the moment I cannot
use it, because we have only libtool-2.4.2 and you need at least
libtool-2.4.4 so that autogen.sh failed. Our admin tries to
install the latest versions of all necessary tools. I don't know
if he succeeds today, because his working hours are over in 45
minutes. I'll try as soon as possible.
Best regards
Siegmar
On 01/14/16 17:33, Halim Amer wrote:
> you can check out that version from our git repo:
> git clone http://git.mpich.org/mpich.git
> cd mpich
> git checkout 77592165aa3
>
> --Halim
> www.mcs.anl.gov/~aamer
>
> On 1/14/16 9:52 AM, Siegmar Gross wrote:
>> Hi,
>>
>> where can I find "version 77592165aa3"? I have only the following
>> archives after the release of mpich-3.2.tar.gz.
>>
>> loki mpich-3.2.1 113 ls -C1 *.gz
>> mpich-master-v3.2-42-g67631a5c0e9e.tar.gz
>> mpich-master-v3.2-87-g7150bbc02ec8.tar.gz
>> mpich-master-v3.2-88-gbbb40df74d46.tar.gz
>>
>> I've attached both config.log files from my gcc and cc version.
>>
>> I've searched for "libunwind tools" for our Linux version. It seems that
>> they are available for "Suse Linux Enterprise Server", but I didn't find
>> them for "Suse Linux Enterprise Desktop", which we use for most of our
>> machines. Shall I ask our Admin to install them?
>>
>>
>> Best regards
>>
>> Siegmar
>>
>>
>> On 01/14/16 16:25, Rob Latham wrote:
>>>
>>>
>>> On 01/14/2016 07:21 AM, Siegmar Gross wrote:
>>>> Hi,
>>>>
>>>> today I tried to build mpich-master-v3.2-88-gbbb40df74d46 on my machine
>>>> (SUSE Linux Enterprise Server 12.0 x86_64) with gcc-5.2.0 and Sun C
>>>> 5.13.
>>>> I used the following command to build the system for gcc.
>>>
>>> This looks like the "portable backtrace" functionality I added
>>> recently. Maybe I need to work on the "portable" part
>>> of that.
>>>
>>> MPICH thinks your environment has the libunwind tools, and so it is
>>> trying to use libunwind to display the backtrace.
>>>
>>> Unfortunately there's one more complication: a reorganization of the
>>> MPL sources (commit 12c912ec6372).
>>>
>>> If you can provide me with two pieces of information that would be great:
>>>
>>> - what if you check out MPICH from a few weeks back? I want to rule
>>> out the source reorg, and if you check out version
>>> 77592165aa3, that will have just my changes and none of the reorg
>>> changes.
>>>
>>> - Can you send me your src/mpl/config.log ? (not the config.log from
>>> top-level mpich, but the config.log subconfigure
>>> from src/mpl) I would like to see what backtrace libraries configure
>>> found in your environment. Then I can reproduce
>>> it on my end.
>>>
>>> ==rob
>>>
>>>>
>>>> mkdir
>>>> mpich-master-v3.2-88-gbbb40df74d46-${SYSTEM_ENV}.${MACHINE_ENV}.64_gcc
>>>> cd
>>>> mpich-master-v3.2-88-gbbb40df74d46-${SYSTEM_ENV}.${MACHINE_ENV}.64_gcc
>>>>
>>>> ../mpich-master-v3.2-88-gbbb40df74d46/configure \
>>>> --prefix=/usr/local/mpich-3.2.1_64_gcc \
>>>> --libdir=/usr/local/mpich-3.2.1_64_gcc/lib64 \
>>>> --includedir=/usr/local/mpich-3.2.1_64_gcc/include64 \
>>>> CC="gcc" CXX="g++" F77="gfortran" FC="gfortran" \
>>>> CFLAGS="-m64 -z noexecstack" CXXFLAGS="-m64" FFLAGS="-m64"
>>>> FCFLAGS="-m64" \
>>>> LDFLAGS="-m64" \
>>>> --enable-fortran=yes --enable-cxx --enable-romio \
>>>> --enable-debuginfo --enable-smpcoll \
>>>> --enable-threads=multiple --with-thread-package=posix \
>>>> --enable-shared \
>>>> |& tee log.configure.$SYSTEM_ENV.$MACHINE_ENV.64_gcc
>>>>
>>>> make |& tee log.make.$SYSTEM_ENV.$MACHINE_ENV.64_gcc
>>>>
>>>>
>>>> "make" broke with the following error for "cc".
>>>>
>>>> loki mpich-master-v3.2-88-gbbb40df74d46-Linux.x86_64.64_cc 111 cat
>>>> log.make.Linux.x86_64.64_cc
>>>> if test ! -h ./src/include/mpio.h ; then \
>>>> rm -f ./src/include/mpio.h ; \
>>>> ( cd ./src/include && \
>>>> ln -s ../mpi/romio/include/mpio.h ) ; \
>>>> fi
>>>> make all-recursive
>>>> make[1]: Entering directory
>>>> '/export2/src/mpich-3.2.1/mpich-master-v3.2-88-gbbb40df74d46-Linux.x86_64.64_cc'
>>>>
>>>>
>>>> Making all in
>>>> /export2/src/mpich-3.2.1/mpich-master-v3.2-88-gbbb40df74d46-Linux.x86_64.64_cc/src/mpl
>>>>
>>>>
>>>> make[2]: Entering directory
>>>> '/export2/src/mpich-3.2.1/mpich-master-v3.2-88-gbbb40df74d46-Linux.x86_64.64_cc/src/mpl'
>>>>
>>>>
>>>> CC src/bt/mpl_bt.lo
>>>> "../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c",
>>>> line 50: undefined symbol: unw_cursor_t
>>>> "../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c",
>>>> line 50: syntax error before or at: cursor
>>>> "../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c",
>>>> line 51: undefined symbol: unw_context_t
>>>> "../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c",
>>>> line 52: undefined symbol: unw_word_t
>>>> "../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c",
>>>> line 57: warning: implicit function declaration: unw_getcontext
>>>> "../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c",
>>>> line 57: undefined symbol: uc
>>>> "../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c",
>>>> line 58: warning: implicit function declaration: unw_init_local
>>>> "../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c",
>>>> line 58: undefined symbol: cursor
>>>> "../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c",
>>>> line 59: warning: implicit function declaration: unw_step
>>>> "../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c",
>>>> line 60: warning: implicit function declaration: unw_get_reg
>>>> "../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c",
>>>> line 60: undefined symbol: UNW_REG_IP
>>>> "../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c",
>>>> line 60: undefined symbol: ip
>>>> "../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c",
>>>> line 61: warning: implicit function declaration: unw_get_proc_name
>>>> "../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c",
>>>> line 62: undefined symbol: offset
>>>> cc: acomp failed for
>>>> ../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c
>>>> Makefile:923: recipe for target 'src/bt/mpl_bt.lo' failed
>>>> make[2]: *** [src/bt/mpl_bt.lo] Error 1
>>>> make[2]: Leaving directory
>>>> '/export2/src/mpich-3.2.1/mpich-master-v3.2-88-gbbb40df74d46-Linux.x86_64.64_cc/src/mpl'
>>>>
>>>>
>>>> Makefile:38434: recipe for target 'all-recursive' failed
>>>> make[1]: *** [all-recursive] Error 1
>>>> make[1]: Leaving directory
>>>> '/export2/src/mpich-3.2.1/mpich-master-v3.2-88-gbbb40df74d46-Linux.x86_64.64_cc'
>>>>
>>>>
>>>> Makefile:10304: recipe for target 'all' failed
>>>> make: *** [all] Error 2
>>>> loki mpich-master-v3.2-88-gbbb40df74d46-Linux.x86_64.64_cc 112
>>>>
>>>>
>>>>
>>>> "make" broke with the following error for "gcc".
>>>>
>>>> loki mpich-master-v3.2-88-gbbb40df74d46-Linux.x86_64.64_gcc 114 cat
>>>> log.make.Linux.x86_64.64_gcc
>>>> if test ! -h ./src/include/mpio.h ; then \
>>>> rm -f ./src/include/mpio.h ; \
>>>> ( cd ./src/include && \
>>>> ln -s ../mpi/romio/include/mpio.h ) ; \
>>>> fi
>>>> make all-recursive
>>>> make[1]: Entering directory
>>>> '/export2/src/mpich-3.2.1/mpich-master-v3.2-88-gbbb40df74d46-Linux.x86_64.64_gcc'
>>>>
>>>>
>>>> Making all in
>>>> /export2/src/mpich-3.2.1/mpich-master-v3.2-88-gbbb40df74d46-Linux.x86_64.64_gcc/src/mpl
>>>>
>>>>
>>>> make[2]: Entering directory
>>>> '/export2/src/mpich-3.2.1/mpich-master-v3.2-88-gbbb40df74d46-Linux.x86_64.64_gcc/src/mpl'
>>>>
>>>>
>>>> CC src/bt/mpl_bt.lo
>>>> ../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c: In
>>>> function ‘backtrace_libunwind’:
>>>> ../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c:50:5:
>>>> error:
>>>> unknown type name ‘unw_cursor_t’
>>>> unw_cursor_t cursor;
>>>> ^
>>>> ../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c:51:5:
>>>> error:
>>>> unknown type name ‘unw_context_t’
>>>> unw_context_t uc;
>>>> ^
>>>> ../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c:52:5:
>>>> error:
>>>> unknown type name ‘unw_word_t’
>>>> unw_word_t ip, offset;
>>>> ^
>>>> ../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c:57:5:
>>>> warning:
>>>> implicit declaration of function ‘unw_getcontext’
>>>> [-Wimplicit-function-declaration]
>>>> unw_getcontext(&uc);
>>>> ^
>>>> ../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c:58:5:
>>>> warning:
>>>> implicit declaration of function ‘unw_init_local’
>>>> [-Wimplicit-function-declaration]
>>>> unw_init_local(&cursor, &uc);
>>>> ^
>>>> ../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c:59:12:
>>>>
>>>> warning: implicit declaration of function ‘unw_step’
>>>> [-Wimplicit-function-declaration]
>>>> while (unw_step(&cursor) > 0) {
>>>> ^
>>>> ../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c:60:9:
>>>> warning:
>>>> implicit declaration of function ‘unw_get_reg’
>>>> [-Wimplicit-function-declaration]
>>>> unw_get_reg(&cursor, UNW_REG_IP, &ip);
>>>> ^
>>>> ../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c:60:30:
>>>>
>>>> error: ‘UNW_REG_IP’ undeclared (first use in this function)
>>>> unw_get_reg(&cursor, UNW_REG_IP, &ip);
>>>> ^
>>>> ../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c:60:30:
>>>>
>>>> note: each undeclared identifier is reported only once for each function
>>>> it appears in
>>>> ../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c:61:9:
>>>> warning:
>>>> implicit declaration of function ‘unw_get_proc_name’
>>>> [-Wimplicit-function-declaration]
>>>> unw_get_proc_name(&cursor, buffer,
>>>> ^
>>>> Makefile:920: recipe for target 'src/bt/mpl_bt.lo' failed
>>>> make[2]: *** [src/bt/mpl_bt.lo] Error 1
>>>> make[2]: Leaving directory
>>>> '/export2/src/mpich-3.2.1/mpich-master-v3.2-88-gbbb40df74d46-Linux.x86_64.64_gcc/src/mpl'
>>>>
>>>>
>>>> Makefile:38434: recipe for target 'all-recursive' failed
>>>> make[1]: *** [all-recursive] Error 1
>>>> make[1]: Leaving directory
>>>> '/export2/src/mpich-3.2.1/mpich-master-v3.2-88-gbbb40df74d46-Linux.x86_64.64_gcc'
>>>>
>>>>
>>>> Makefile:10304: recipe for target 'all' failed
>>>> make: *** [all] Error 2
>>>> loki mpich-master-v3.2-88-gbbb40df74d46-Linux.x86_64.64_gcc 114
>>>>
>>>>
>>>>
>>>> I would be grateful if somebody can fix the problem. Thank you very
>>>> much for any help in advance.
>>>>
>>>>
>>>> Kind regards
>>>>
>>>> Siegmar
>>>> _______________________________________________
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