[mpich-discuss] Error buildingmpich-master-v3.2-88-gbbb40df74d46
Rob Latham
robl at mcs.anl.gov
Thu Jan 14 10:39:42 CST 2016
On 01/14/2016 09:52 AM, Siegmar Gross wrote:
> Hi,
>
> where can I find "version 77592165aa3"? I have only the following
> archives after the release of mpich-3.2.tar.gz.
>
I misunderstood your setup. I thought you were working directly from
our git repository, not from git snapshots. If you were working from a
repository, you would do this:
$ git checkout -b 3.2.1-77592165aa3 77592165aa3
> loki mpich-3.2.1 113 ls -C1 *.gz
> mpich-master-v3.2-42-g67631a5c0e9e.tar.gz
> mpich-master-v3.2-87-g7150bbc02ec8.tar.gz
> mpich-master-v3.2-88-gbbb40df74d46.tar.gz
g7150bbc02ec8 is too old to contain my changes. g67631a5c0e9e might
be the one to try.
> I've attached both config.log files from my gcc and cc version.
config.log-gcc says the unw_backtrace symbol exists in libunwind, but
there is no libunwind.h header file on your system. Looks like I need
to be more careful in how I detect support for backtrace libraries.
> I've searched for "libunwind tools" for our Linux version. It seems that
> they are available for "Suse Linux Enterprise Server", but I didn't find
> them for "Suse Linux Enterprise Desktop", which we use for most of our
> machines. Shall I ask our Admin to install them?
>
what is supposed to happen is we look for several ways to generate a
backtrace, then use the one we found. What's bothering me is that we
think we found libunwind, but when we try to use libunwind's features we
fail to compile. our configure should not report that libunwind is
available if it is unusable.
For example, our configure also found the backtrace_symbols and
backtrace_create_state functions. These are often part of GCC, or maybe
standalone in the libbacktrace package. On your system (as is common on
many systems) there is no backtrace.h
I will send you a patch to try out that will only use libunwind if it
finds both the header file and the symbols.
==rob
>
> Best regards
>
> Siegmar
>
>
> On 01/14/16 16:25, Rob Latham wrote:
>>
>>
>> On 01/14/2016 07:21 AM, Siegmar Gross wrote:
>>> Hi,
>>>
>>> today I tried to build mpich-master-v3.2-88-gbbb40df74d46 on my machine
>>> (SUSE Linux Enterprise Server 12.0 x86_64) with gcc-5.2.0 and Sun C
>>> 5.13.
>>> I used the following command to build the system for gcc.
>>
>> This looks like the "portable backtrace" functionality I added
>> recently. Maybe I need to work on the "portable" part
>> of that.
>>
>> MPICH thinks your environment has the libunwind tools, and so it is
>> trying to use libunwind to display the backtrace.
>>
>> Unfortunately there's one more complication: a reorganization of the
>> MPL sources (commit 12c912ec6372).
>>
>> If you can provide me with two pieces of information that would be great:
>>
>> - what if you check out MPICH from a few weeks back? I want to rule
>> out the source reorg, and if you check out version
>> 77592165aa3, that will have just my changes and none of the reorg
>> changes.
>>
>> - Can you send me your src/mpl/config.log ? (not the config.log from
>> top-level mpich, but the config.log subconfigure
>> from src/mpl) I would like to see what backtrace libraries configure
>> found in your environment. Then I can reproduce
>> it on my end.
>>
>> ==rob
>>
>>>
>>> mkdir
>>> mpich-master-v3.2-88-gbbb40df74d46-${SYSTEM_ENV}.${MACHINE_ENV}.64_gcc
>>> cd
>>> mpich-master-v3.2-88-gbbb40df74d46-${SYSTEM_ENV}.${MACHINE_ENV}.64_gcc
>>>
>>> ../mpich-master-v3.2-88-gbbb40df74d46/configure \
>>> --prefix=/usr/local/mpich-3.2.1_64_gcc \
>>> --libdir=/usr/local/mpich-3.2.1_64_gcc/lib64 \
>>> --includedir=/usr/local/mpich-3.2.1_64_gcc/include64 \
>>> CC="gcc" CXX="g++" F77="gfortran" FC="gfortran" \
>>> CFLAGS="-m64 -z noexecstack" CXXFLAGS="-m64" FFLAGS="-m64"
>>> FCFLAGS="-m64" \
>>> LDFLAGS="-m64" \
>>> --enable-fortran=yes --enable-cxx --enable-romio \
>>> --enable-debuginfo --enable-smpcoll \
>>> --enable-threads=multiple --with-thread-package=posix \
>>> --enable-shared \
>>> |& tee log.configure.$SYSTEM_ENV.$MACHINE_ENV.64_gcc
>>>
>>> make |& tee log.make.$SYSTEM_ENV.$MACHINE_ENV.64_gcc
>>>
>>>
>>> "make" broke with the following error for "cc".
>>>
>>> loki mpich-master-v3.2-88-gbbb40df74d46-Linux.x86_64.64_cc 111 cat
>>> log.make.Linux.x86_64.64_cc
>>> if test ! -h ./src/include/mpio.h ; then \
>>> rm -f ./src/include/mpio.h ; \
>>> ( cd ./src/include && \
>>> ln -s ../mpi/romio/include/mpio.h ) ; \
>>> fi
>>> make all-recursive
>>> make[1]: Entering directory
>>> '/export2/src/mpich-3.2.1/mpich-master-v3.2-88-gbbb40df74d46-Linux.x86_64.64_cc'
>>>
>>>
>>> Making all in
>>> /export2/src/mpich-3.2.1/mpich-master-v3.2-88-gbbb40df74d46-Linux.x86_64.64_cc/src/mpl
>>>
>>>
>>> make[2]: Entering directory
>>> '/export2/src/mpich-3.2.1/mpich-master-v3.2-88-gbbb40df74d46-Linux.x86_64.64_cc/src/mpl'
>>>
>>>
>>> CC src/bt/mpl_bt.lo
>>> "../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c",
>>> line 50: undefined symbol: unw_cursor_t
>>> "../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c",
>>> line 50: syntax error before or at: cursor
>>> "../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c",
>>> line 51: undefined symbol: unw_context_t
>>> "../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c",
>>> line 52: undefined symbol: unw_word_t
>>> "../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c",
>>> line 57: warning: implicit function declaration: unw_getcontext
>>> "../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c",
>>> line 57: undefined symbol: uc
>>> "../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c",
>>> line 58: warning: implicit function declaration: unw_init_local
>>> "../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c",
>>> line 58: undefined symbol: cursor
>>> "../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c",
>>> line 59: warning: implicit function declaration: unw_step
>>> "../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c",
>>> line 60: warning: implicit function declaration: unw_get_reg
>>> "../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c",
>>> line 60: undefined symbol: UNW_REG_IP
>>> "../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c",
>>> line 60: undefined symbol: ip
>>> "../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c",
>>> line 61: warning: implicit function declaration: unw_get_proc_name
>>> "../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c",
>>> line 62: undefined symbol: offset
>>> cc: acomp failed for
>>> ../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c
>>> Makefile:923: recipe for target 'src/bt/mpl_bt.lo' failed
>>> make[2]: *** [src/bt/mpl_bt.lo] Error 1
>>> make[2]: Leaving directory
>>> '/export2/src/mpich-3.2.1/mpich-master-v3.2-88-gbbb40df74d46-Linux.x86_64.64_cc/src/mpl'
>>>
>>>
>>> Makefile:38434: recipe for target 'all-recursive' failed
>>> make[1]: *** [all-recursive] Error 1
>>> make[1]: Leaving directory
>>> '/export2/src/mpich-3.2.1/mpich-master-v3.2-88-gbbb40df74d46-Linux.x86_64.64_cc'
>>>
>>>
>>> Makefile:10304: recipe for target 'all' failed
>>> make: *** [all] Error 2
>>> loki mpich-master-v3.2-88-gbbb40df74d46-Linux.x86_64.64_cc 112
>>>
>>>
>>>
>>> "make" broke with the following error for "gcc".
>>>
>>> loki mpich-master-v3.2-88-gbbb40df74d46-Linux.x86_64.64_gcc 114 cat
>>> log.make.Linux.x86_64.64_gcc
>>> if test ! -h ./src/include/mpio.h ; then \
>>> rm -f ./src/include/mpio.h ; \
>>> ( cd ./src/include && \
>>> ln -s ../mpi/romio/include/mpio.h ) ; \
>>> fi
>>> make all-recursive
>>> make[1]: Entering directory
>>> '/export2/src/mpich-3.2.1/mpich-master-v3.2-88-gbbb40df74d46-Linux.x86_64.64_gcc'
>>>
>>>
>>> Making all in
>>> /export2/src/mpich-3.2.1/mpich-master-v3.2-88-gbbb40df74d46-Linux.x86_64.64_gcc/src/mpl
>>>
>>>
>>> make[2]: Entering directory
>>> '/export2/src/mpich-3.2.1/mpich-master-v3.2-88-gbbb40df74d46-Linux.x86_64.64_gcc/src/mpl'
>>>
>>>
>>> CC src/bt/mpl_bt.lo
>>> ../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c: In
>>> function ‘backtrace_libunwind’:
>>> ../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c:50:5:
>>> error:
>>> unknown type name ‘unw_cursor_t’
>>> unw_cursor_t cursor;
>>> ^
>>> ../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c:51:5:
>>> error:
>>> unknown type name ‘unw_context_t’
>>> unw_context_t uc;
>>> ^
>>> ../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c:52:5:
>>> error:
>>> unknown type name ‘unw_word_t’
>>> unw_word_t ip, offset;
>>> ^
>>> ../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c:57:5:
>>> warning:
>>> implicit declaration of function ‘unw_getcontext’
>>> [-Wimplicit-function-declaration]
>>> unw_getcontext(&uc);
>>> ^
>>> ../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c:58:5:
>>> warning:
>>> implicit declaration of function ‘unw_init_local’
>>> [-Wimplicit-function-declaration]
>>> unw_init_local(&cursor, &uc);
>>> ^
>>> ../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c:59:12:
>>>
>>> warning: implicit declaration of function ‘unw_step’
>>> [-Wimplicit-function-declaration]
>>> while (unw_step(&cursor) > 0) {
>>> ^
>>> ../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c:60:9:
>>> warning:
>>> implicit declaration of function ‘unw_get_reg’
>>> [-Wimplicit-function-declaration]
>>> unw_get_reg(&cursor, UNW_REG_IP, &ip);
>>> ^
>>> ../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c:60:30:
>>>
>>> error: ‘UNW_REG_IP’ undeclared (first use in this function)
>>> unw_get_reg(&cursor, UNW_REG_IP, &ip);
>>> ^
>>> ../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c:60:30:
>>>
>>> note: each undeclared identifier is reported only once for each function
>>> it appears in
>>> ../../../mpich-master-v3.2-88-gbbb40df74d46/src/mpl/src/bt/mpl_bt.c:61:9:
>>> warning:
>>> implicit declaration of function ‘unw_get_proc_name’
>>> [-Wimplicit-function-declaration]
>>> unw_get_proc_name(&cursor, buffer,
>>> ^
>>> Makefile:920: recipe for target 'src/bt/mpl_bt.lo' failed
>>> make[2]: *** [src/bt/mpl_bt.lo] Error 1
>>> make[2]: Leaving directory
>>> '/export2/src/mpich-3.2.1/mpich-master-v3.2-88-gbbb40df74d46-Linux.x86_64.64_gcc/src/mpl'
>>>
>>>
>>> Makefile:38434: recipe for target 'all-recursive' failed
>>> make[1]: *** [all-recursive] Error 1
>>> make[1]: Leaving directory
>>> '/export2/src/mpich-3.2.1/mpich-master-v3.2-88-gbbb40df74d46-Linux.x86_64.64_gcc'
>>>
>>>
>>> Makefile:10304: recipe for target 'all' failed
>>> make: *** [all] Error 2
>>> loki mpich-master-v3.2-88-gbbb40df74d46-Linux.x86_64.64_gcc 114
>>>
>>>
>>>
>>> I would be grateful if somebody can fix the problem. Thank you very
>>> much for any help in advance.
>>>
>>>
>>> Kind regards
>>>
>>> Siegmar
>>> _______________________________________________
>>> discuss mailing list discuss at mpich.org
>>> To manage subscription options or unsubscribe:
>>> https://lists.mpich.org/mailman/listinfo/discuss
>> _______________________________________________
>> discuss mailing list discuss at mpich.org
>> To manage subscription options or unsubscribe:
>> https://lists.mpich.org/mailman/listinfo/discuss
>
>
> _______________________________________________
> discuss mailing list discuss at mpich.org
> To manage subscription options or unsubscribe:
> https://lists.mpich.org/mailman/listinfo/discuss
>
_______________________________________________
discuss mailing list discuss at mpich.org
To manage subscription options or unsubscribe:
https://lists.mpich.org/mailman/listinfo/discuss
More information about the discuss
mailing list