[mpich-discuss] MPICH 3.2 on BlueGene/Q

Fri Jan 8 04:35:35 CST 2016

Hi,

I have been trying to install MPICH 3 on a BlueGene/Q system to evaluate the MPI-3 functionalities that are missed in the IBM supported MPI, and I also want to use it to build ARMCI-MPI3, GA and NWChem on this system.

Based on the instruction prepared by Argonne National Lab (https://wiki.mpich.org/mpich/index.php/BGQ),  I managed to build the MPICH 3.1rc4 on this system. Although I am still evaluating the stability and correctness of this version on BGQ, it seem promising so far. 

However, I got problem to build MPICH 3.2 with the same instruction, can anyone shade me some light to let me get it compile?

Thanks!

Regards,
Dominic

Here is the environment variables
====================================================================================
export CC=/opt/ibmcmp/vac/bg/12.1/bin/bgxlc_r
export CXX=/opt/ibmcmp/vacpp/bg/12.1/bin/bgxlC_r
export F77=/opt/ibmcmp/xlf/bg/14.1/bin/bgxlf_r
export FC=/opt/ibmcmp/xlf/bg/14.1/bin/bgxlf90_r
export AR=/bgsys/drivers/V1R2M0/ppc64/gnu-linux/powerpc64-bgq-linux/bin/ar
export LD=/bgsys/drivers/V1R2M0/ppc64/gnu-linux/powerpc64-bgq-linux/bin/ld
export RANLIB=/bgsys/drivers/V1R2M0/ppc64/gnu-linux/powerpc64-bgq-linux/bin/ranlib
export MPICHLIB_CXXFLAGS="-qhot -qinline=800 -qflag=i:i -qsaveopt -qsuppress=1506-236"
export MPICHLIB_CFLAGS=${MPICHLIB_CXXFLAGS}
export MPICHLIB_FFLAGS=${MPICHLIB_CXXFLAGS}
export MPICHLIB_F90FLAGS=${MPICHLIB_CXXFLAGS}
====================================================================================

Here is the configure
====================================================================================
../configure --host=powerpc64-bgq-linux --with-device=pamid --with-file-system=gpfs:BGQ --with-bgq-install-dir=/bgsys/drivers/V1R2M0/ppc64 --with-pami=/bgsys/drivers/V1R2M0/ppc64/comm/sys --with-pami-include=/bgsys/drivers/V1R2M0/ppc64/comm/sys/include --with-pami-lib=/bgsys/drivers/V1R2M0/ppc64/comm/sys/lib --disable-wrapper-rpath --enable-fast=nochkmsg,notiming,O3 --with-assert-level=0 --disable-error-messages --disable-debuginfo --enable-thread-cs=per-object --with-atomic-primitives --enable-handle-allocation=tls --enable-refcount=lock-free --disable-predefined-refcount --with-cross-file=src/mpid/pamid/cross/bgq8 --prefix=/scratch/home/chiensh/apps/mpich/3.2.rc2
====================================================================================

Here is the make log
====================================================================================
...
 CC       src/mpi/attr/lib_libmpi_la-attr_delete.lo
"/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/mpidi_thread.h", line 64.9: 1506-358 (I) "MPIU_THREAD_CS_ENTER" is defined on line 80 of ../src/util/thread/mpiu_thread_multiple.h.
"/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/mpidi_thread.h", line 65.9: 1506-358 (I) "MPIU_THREAD_CS_EXIT" is defined on line 81 of ../src/util/thread/mpiu_thread_multiple.h.
"/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/mpidi_thread.h", line 66.9: 1506-358 (I) "MPIU_THREAD_CS_YIELD" is defined on line 82 of ../src/util/thread/mpiu_thread_multiple.h.
"../src/include/mpiimpl.h", line 1184.5: 1506-046 (S) Syntax error.
"../src/include/mpiimpl.h", line 1481.5: 1506-046 (S) Syntax error.
"../src/include/mpiimpl.h", line 1636.5: 1506-046 (S) Syntax error.
"../src/include/mpiimpl.h", line 2785.5: 1506-343 (S) Redeclaration of MPID_Send differs from previous declaration on line 2760 of "../src/include/mpiimpl.h".
"../src/include/mpiimpl.h", line 2785.5: 1506-377 (I) The type "int" of parameter 2 differs from the previous type "long".
"../src/include/mpiimpl.h", line 2884.5: 1506-343 (S) Redeclaration of MPID_Isend differs from previous declaration on line 2865 of "../src/include/mpiimpl.h".
"../src/include/mpiimpl.h", line 2884.5: 1506-377 (I) The type "int" of parameter 2 differs from the previous type "long".
"../src/include/mpitimpl.h", line 245.5: 1506-046 (S) Syntax error.
"../src/include/mpitimpl.h", line 900.40: 1506-022 (S) "total" is not a member of "struct {...}".
"/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/../src/mpid_request.h", line 156.21: 1506-022 (S) "cc" is not a member of "struct MPID_Request".
"/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/../src/mpid_request.h", line 157.8: 1506-022 (S) "cc_ptr" is not a member of "struct MPID_Request".
"/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/../src/mpid_request.h", line 157.23: 1506-022 (S) "cc" is not a member of "struct MPID_Request".
"/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/../src/mpid_request.h", line 283.62: 1506-099 (S) Unexpected argument.
"/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/../src/mpid_request.h", line 326.23: 1506-022 (S) "cc_ptr" is not a member of "struct MPID_Request".
"/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/../src/mpid_request.h", line 341.23: 1506-022 (S) "cc_ptr" is not a member of "struct MPID_Request".
"/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/mpidpost.h", line 56.44: 1506-022 (S) "vcr" is not a member of "struct MPID_Comm".
"/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/mpidpost.h", line 83.43: 1506-022 (S) "vcrt" is not a member of "struct MPID_Comm".
"/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/mpidpost.h", line 84.37: 1506-022 (S) "vcrt" is not a member of "struct MPID_Comm".
"/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/mpidpost.h", line 84.57: 1506-022 (S) "vcr" is not a member of "struct MPID_Comm".
"/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/mpidpost.h", line 91.42: 1506-022 (S) "vcr" is not a member of "struct MPID_Comm".
"/scratch/home/chiensh/mpich/mpich-3.2rc2/src/mpid/pamid/include/mpidpost.h", line 92.41: 1506-022 (S) "vcr" is not a member of "struct MPID_Comm".
"../src/mpi/attr/attr_delete.c", line 65.26: 1506-045 (S) Undeclared identifier GLOBAL.
make[2]: *** [src/mpi/attr/lib_libmpi_la-attr_delete.lo] Error 1
make[2]: Leaving directory `/scratch/home/chiensh/mpich/mpich-3.2rc2/build'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/scratch/home/chiensh/mpich/mpich-3.2rc2/build'
make: *** [all] Error 2
====================================================================================
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