[mpich-discuss] mpich-3.2 34
Professor W P Jones
w.jones at imperial.ac.uk
Tue Jan 5 15:40:34 CST 2016
Hi Jeff
Yes /usr/lib64/libc.so does exist on my machine! But how do I configure
mpich to use this libc?
Thanks
Bill
Professor W P Jones
Department of Mechanical Engineering
Imperial College London
Exhibition Road
London SW7 2AZ
Tel: +44 (0)20 7594 7037/7033
Mobile +44 (0)776 495 9702
Fax: +44 (0)20 7594 5702
E-mail: w.jones at imperial.ac.uk
web site: http://www.imperial.ac.uk/me
On 05/01/16 21:07, Jeff Hammond wrote:
> According to
> http://www.pgroup.com/userforum/viewtopic.php?t=539&view=previous&sid=50478c97090822511008dc30128ee908
> and
> http://www.linuxquestions.org/questions/linux-software-2/gcc-linker-error-hidden-symbol-%60stat'-in-usr-lib-libc_nonshared-a-stat-os-755962/
> <http://www.linuxquestions.org/questions/linux-software-2/gcc-linker-error-hidden-symbol-%60stat%27-in-usr-lib-libc_nonshared-a-stat-os-755962/>,
> it looks like a glibc issue.
>
> It might help to verify that the libc you are getting in this case is
> the right one and it works. You are getting one that appears designed
> for static linkage. Is there no /usr/lib64/libc.so on your machine?
>
> Jeff
>
> On Tue, Jan 5, 2016 at 11:04 AM, Professor W P Jones
> <w.jones at imperial.ac.uk <mailto:w.jones at imperial.ac.uk>> wrote:
>
> Hi Ken
>
> I can send you the Makefile and output but the code has run
> successfully using various other flavours of mpi and compilers -
> mpich2, openmpi, intel mpi, gfortran and ifort etc. The example
> program pi3f90.f90 produces a similar error:
>
> wpj at kelvin:f90 20 mpif90 pi3f90.f90
> Encountered 0 errors, 0 warnings in file pi3f90.f90.
> /usr/bin/ld: a.out: hidden symbol `lstat64' in
> /usr/lib64/libc_nonshared.a(lstat64.oS) is referenced by DSO
> /usr/bin/ld: final link failed: Nonrepresentable section on output
>
> Regards
> Bill
>
> Professor W P Jones
> Department of Mechanical Engineering
> Imperial College London
> Exhibition Road
> London SW7 2AZ
> Tel: +44 (0)20 7594 7037/7033
> Mobile +44 (0)776 495 9702
> Fax: +44 (0)20 7594 5702
> E-mail: w.jones at imperial.ac.uk <mailto:w.jones at imperial.ac.uk>
> web site: http://www.imperial.ac.uk/me
>
> On 05/01/16 18:08, Kenneth Raffenetti wrote:
>
> Hi,
>
> Do you have a make log from the application you are trying to
> build that you can share?
>
> Separately, did the example cpi application build successfully
> at the end of the MPICH build?
>
> Ken
>
> On 01/05/2016 02:44 AM, Professor W P Jones wrote:
>
> Hi
>
> I have successfully compiled and installed the version
> suggested.
> However when I attempt to to use make to compile and link
> it fails on
> the link step with the message:
>
> /usr/bin/ld: boffin: hidden symbol `lstat64' in
> /usr/lib64/libc_nonshared.a(lstat64.oS) is referenced by DSO
> /usr/bin/ld: final link failed: Nonrepresentable section
> on output
> make: [boffin] Error 1 (ignored)
> mv: cannot stat `./x86_64/boffin': No such file or directory
> make: *** [boffin] Error 1
>
> The log files generated in the compiled and install are
> attached and
> the output from mpiexec -info is:
>
> HYDRA build details:
> Version: 3.2
> Release Date: Mon Jan 4
> 00:00:40 CST 2016
> CC: icc
> CXX: icpc
> F77: lf95
> F90: lf95
> Configure options: '--disable-option-checking'
> '--prefix=/opt/mpich' '--enable-fortran=all' 'FC=lf95'
> 'F77=lf95'
> '--cache-file=/dev/null' '--srcdir=.' 'CC=icc' 'CFLAGS=
> -O2' 'LDFLAGS='
> 'LIBS=-lpthread ' 'CPPFLAGS=
> -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/mpl/include
> -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/mpl/include
> -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/openpa/src
> -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/openpa/src
> -D_REENTRANT
> -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/mpi/romio/include'
>
> 'MPLLIBNAME=mpl'
> Process Manager: pmi
> Launchers available: ssh rsh fork
> slurm ll lsf
> sge manual persist
> Topology libraries available: hwloc
> Resource management kernels available: user slurm
> ll lsf sge pbs
> cobalt
> Checkpointing libraries available:
> Demux engines available: poll select
>
> Regards
> Bill
>
> Professor W P Jones
> Department of Mechanical Engineering
> Imperial College London
> Exhibition Road
> London SW7 2AZ
> Tel: +44 (0)20 7594 7037/7033
> Mobile +44 (0)776 495 9702
> Fax: +44 (0)20 7594 5702
> E-mail: w.jones at imperial.ac.uk <mailto:w.jones at imperial.ac.uk>
> web site: http://www.imperial.ac.uk/me
>
> On 04/01/16 15:55, Kenneth Raffenetti wrote:
>
> Can you try the latest nightly tarball on the MPICH
> website? I
> committed a patch last night that I believe addresses
> the issue. I
> don't have a system with the lf95 compiler to test, so
> I just went
> from the documentation.
>
> Ken
>
> On 12/27/2015 07:49 PM, Professor W P Jones wrote:
>
> Hi Pavan
>
> Here are all the existing log files.
>
> Regards
> Bill
>
> Professor W P Jones
> Department of Mechanical Engineering
> Imperial College London
> Exhibition Road
> London SW7 2AZ
> Tel: +44 (0)20 7594 7037/7033
> Mobile +44 (0)776 495 9702
> Fax: +44 (0)20 7594 5702
> E-mail: w.jones at imperial.ac.uk
> <mailto:w.jones at imperial.ac.uk>
> web site: http://www.imperial.ac.uk/me
>
> On 28/12/15 00:40, Balaji, Pavan wrote:
>
> Could you send us the log files listed in the
> README?
>
> http://git.mpich.org/mpich.git/blob/HEAD:/README.vin#l235
>
> -- Pavan
>
> On Dec 27, 2015, at 5:34 AM, Professor W P
> Jones
> <w.jones at imperial.ac.uk
> <mailto:w.jones at imperial.ac.uk>> wrote:
>
> Hi
>
> I am trying to build MPICH-3.2 34 using
> Lahey/Fujitsu Linux64
> Fortran Express Release L8.10b and I
> obtain the following error:
>
> checking for Fortran 90 module output
> directory flag...
> configure: error: FCMODOUTFLAG could not
> be determined but is
> critical for the current Fortran build system
>
> Please can you advise how this can be fixed?
>
> Many thanks
> Bill Jones
>
> --
> Professor W P Jones
> Department of Mechanical Engineering
> Imperial College London
> Exhibition Road
> London SW7 2AZ
> Tel: +44 (0)20 7594 7037/7033
> Mobile +44 (0)776 495 9702
> Fax: +44 (0)20 7594 5702
> E-mail: w.jones at imperial.ac.uk
> <mailto:w.jones at imperial.ac.uk>
> web site: http://www.imperial.ac.uk/me
>
> _______________________________________________
> discuss mailing list discuss at mpich.org
> <mailto:discuss at mpich.org>
> To manage subscription options or unsubscribe:
> https://lists.mpich.org/mailman/listinfo/discuss
>
> _______________________________________________
> discuss mailing list discuss at mpich.org
> <mailto:discuss at mpich.org>
> To manage subscription options or unsubscribe:
> https://lists.mpich.org/mailman/listinfo/discuss
>
>
>
> _______________________________________________
> discuss mailing list discuss at mpich.org
> <mailto:discuss at mpich.org>
> To manage subscription options or unsubscribe:
> https://lists.mpich.org/mailman/listinfo/discuss
>
> _______________________________________________
> discuss mailing list discuss at mpich.org
> <mailto:discuss at mpich.org>
> To manage subscription options or unsubscribe:
> https://lists.mpich.org/mailman/listinfo/discuss
>
>
>
>
> _______________________________________________
> discuss mailing list discuss at mpich.org
> <mailto:discuss at mpich.org>
> To manage subscription options or unsubscribe:
> https://lists.mpich.org/mailman/listinfo/discuss
>
> _______________________________________________
> discuss mailing list discuss at mpich.org <mailto:discuss at mpich.org>
> To manage subscription options or unsubscribe:
> https://lists.mpich.org/mailman/listinfo/discuss
>
>
> _______________________________________________
> discuss mailing list discuss at mpich.org <mailto:discuss at mpich.org>
> To manage subscription options or unsubscribe:
> https://lists.mpich.org/mailman/listinfo/discuss
>
>
>
>
> --
> Jeff Hammond
> jeff.science at gmail.com <mailto:jeff.science at gmail.com>
> http://jeffhammond.github.io/
>
>
> _______________________________________________
> discuss mailing list discuss at mpich.org
> To manage subscription options or unsubscribe:
> https://lists.mpich.org/mailman/listinfo/discuss
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.mpich.org/pipermail/discuss/attachments/20160105/a465630d/attachment.html>
-------------- next part --------------
_______________________________________________
discuss mailing list discuss at mpich.org
To manage subscription options or unsubscribe:
https://lists.mpich.org/mailman/listinfo/discuss
More information about the discuss
mailing list