[mpich-discuss] need help to run hybrid code

[Pasha Pashaei]

Dear Colleague
Hi
I am working on hybrid MPI -OpenMp code and face with a problem. I can not run the code as the way that I want.
I can run pure mpi code and also pure openmp code, but not hybrid one.
I used "export OMP_NUM_THREADS=6" and then "mpirun -np 4 ./hybrid.exe > output.txt"
It run but I noticed that It used only virtual threads of  CPUs not physical threads.
I have both OpenMpi and Mpich  on my computer.
My problem is I want to use mpi for communication between nodes and sockets and Openmp for cores which are inside of sockets and nodes, I do not know how to pin cpu to each other in each socket and nodes. I could find some material on internet such as
https://aciref.org/how-to-gain-hybrid-mpi-openmp-code-performance-without-changing-a-line-of-code-a-k-a-dealing-with-task-affinity/
How to gain hybrid MPI-OpenMP code performance without ...<https://aciref.org/how-to-gain-hybrid-mpi-openmp-code-performance-without-changing-a-line-of-code-a-k-a-dealing-with-task-affinity/>
aciref.org
How to gain hybrid MPI-OpenMP code performance without changing a line of code a.k.a. dealing with task affinity
But it did not work, I think I need a PBS file to assign those commands on my grid with qsub command.
If you need more information please let me know.
I am looking forward to hearing from you,
Best regards.


Pasha Pashaei

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