[mpich-discuss] Installation on Blue Gene/Q

Thu Mar 23 02:17:57 CDT 2017

Hi Pavan,

yes, thank you. We will try the 3.3 pre-release.

Cheers,
Marc-Andre

On 23.03.2017 02:36, Balaji, Pavan wrote:
> Marc-Andre,
> 
> We dropped support for the BG/Q pamid device in mpich-3.2.  However, in the mpich-3.3 series, we have brought back support for BG/Q through the CH4:OFI stack.  It's experimental, but the performance so far is significantly better than the old pamid device.  Can you try that instead?
> 
>   -- Pavan
> 
>> On Mar 22, 2017, at 2:45 PM, Marc-André Hermanns <m.a.hermanns at fz-juelich.de> wrote:
>>
>> Dear MPICH team,
>>
>> we are trying to install the latest MPICH 3.2 on our Blue Gene/Q
>> system, but fail with both XL and clang.
>>
>> A colleague forwarded the make error log from his try using XL:
>>
>> make[2]: Entering directory `/homeb/zam/scprod/mstephan/mpich3/mpich-3.2'
>>  CC       src/mpi/attr/lib_libmpi_la-attr_delete.lo
>> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidi_thread.h",
>> line 64.9: 1506-236 (W) Macro name MPIU_THREAD_CS_ENTER has been
>> redefined.
>> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidi_thread.h",
>> line 64.9: 1506-358 (I) "MPIU_THREAD_CS_ENTER" is defined on line 80
>> of ./src/util/thread/mpiu_thread_multiple.h.
>> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidi_thread.h",
>> line 65.9: 1506-236 (W) Macro name MPIU_THREAD_CS_EXIT has been redefined.
>> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidi_thread.h",
>> line 65.9: 1506-358 (I) "MPIU_THREAD_CS_EXIT" is defined on line 81 of
>> ./src/util/thread/mpiu_thread_multiple.h.
>> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidi_thread.h",
>> line 66.9: 1506-236 (W) Macro name MPIU_THREAD_CS_YIELD has been
>> redefined.
>> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidi_thread.h",
>> line 66.9: 1506-358 (I) "MPIU_THREAD_CS_YIELD" is defined on line 82
>> of ./src/util/thread/mpiu_thread_multiple.h.
>> "./src/include/mpiimpl.h", line 1184.5: 1506-046 (S) Syntax error.
>> "./src/include/mpiimpl.h", line 1481.5: 1506-046 (S) Syntax error.
>> "./src/include/mpiimpl.h", line 1636.5: 1506-046 (S) Syntax error.
>> "./src/include/mpiimpl.h", line 2785.5: 1506-343 (S) Redeclaration of
>> MPID_Send differs from previous declaration on line 2760 of
>> "./src/include/mpiimpl.h".
>> "./src/include/mpiimpl.h", line 2785.5: 1506-377 (I) The type "int" of
>> parameter 2 differs from the previous type "long".
>> "./src/include/mpiimpl.h", line 2884.5: 1506-343 (S) Redeclaration of
>> MPID_Isend differs from previous declaration on line 2865 of
>> "./src/include/mpiimpl.h".
>> "./src/include/mpiimpl.h", line 2884.5: 1506-377 (I) The type "int" of
>> parameter 2 differs from the previous type "long".
>> "./src/include/mpitimpl.h", line 245.5: 1506-046 (S) Syntax error.
>> "./src/include/mpitimpl.h", line 900.40: 1506-022 (S) "total" is not a
>> member of "struct {...}".
>> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/../src/mpid_request.h",
>> line 156.21: 1506-022 (S) "cc" is not a member of "struct MPID_Request".
>> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/../src/mpid_request.h",
>> line 157.8: 1506-022 (S) "cc_ptr" is not a member of "struct
>> MPID_Request".
>> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/../src/mpid_request.h",
>> line 157.23: 1506-022 (S) "cc" is not a member of "struct MPID_Request".
>> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/../src/mpid_request.h",
>> line 283.62: 1506-099 (S) Unexpected argument.
>> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/../src/mpid_request.h",
>> line 326.23: 1506-022 (S) "cc_ptr" is not a member of "struct
>> MPID_Request".
>> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/../src/mpid_request.h",
>> line 341.23: 1506-022 (S) "cc_ptr" is not a member of "struct
>> MPID_Request".
>> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidpost.h",
>> line 56.44: 1506-022 (S) "vcr" is not a member of "struct MPID_Comm".
>> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidpost.h",
>> line 83.43: 1506-022 (S) "vcrt" is not a member of "struct MPID_Comm".
>> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidpost.h",
>> line 84.37: 1506-022 (S) "vcrt" is not a member of "struct MPID_Comm".
>> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidpost.h",
>> line 84.57: 1506-022 (S) "vcr" is not a member of "struct MPID_Comm".
>> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidpost.h",
>> line 91.42: 1506-022 (S) "vcr" is not a member of "struct MPID_Comm".
>> "/homeb/zam/scprod/mstephan/mpich3/mpich-3.2/src/mpid/pamid/include/mpidpost.h",
>> line 92.41: 1506-022 (S) "vcr" is not a member of "struct MPID_Comm".
>> "src/mpi/attr/attr_delete.c", line 65.26: 1506-045 (S) Undeclared
>> identifier GLOBAL.
>> make[2]: *** [src/mpi/attr/lib_libmpi_la-attr_delete.lo] Error 1
>> make[2]: Leaving directory `/homeb/zam/scprod/mstephan/mpich3/mpich-3.2'
>> make[1]: *** [all-recursive] Error 1
>> make[1]: Leaving directory `/homeb/zam/scprod/mstephan/mpich3/mpich-3.2'
>> make: *** [all] Error 2
>>
>> Is there something obvious that we missed?
>>
>> Cheers,
>> Marc-Andre
>>
>> -- 
>> Marc-Andre Hermanns
>> Jülich Aachen Research Alliance,
>> High Performance Computing (JARA-HPC)
>> Jülich Supercomputing Centre (JSC)
>>
>> Wilhelm-Johnen-Str.
>> 52425 Jülich
>> Germany
>>
>> Phone: +49 2461 61 2509 | +49 241 80 24381
>> Fax: +49 2461 80 6 99753
>> www.jara.org/jara-hpc
>> email: m.a.hermanns at fz-juelich.de
>>
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> 
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-- 
Marc-Andre Hermanns
Jülich Aachen Research Alliance,
High Performance Computing (JARA-HPC)
Jülich Supercomputing Centre (JSC)

Wilhelm-Johnen-Str.
52425 Jülich
Germany

Phone: +49 2461 61 2509 | +49 241 80 24381
Fax: +49 2461 80 6 99753
www.jara.org/jara-hpc
email: m.a.hermanns at fz-juelich.de

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