[mpich-discuss] MPI_Comm_spawn zombies have risen from the dead.

[Zhou, Hui]

Hi Thomas,

To summarize issue: MPICH proxy does not reap processes after its exit?

I’ll look into the issue. From my peruse of current MPI standards, it does not really specify the behavior after MPI_Finalize. The dynamic process part of MPI support is weak, primary due to lack of application adoption. Regardless, I agree that the proxy creates the process should be responsible to reap its dead children.

—
Hui Zhou








On Dec 6, 2018, at 3:53 AM, Thomas Pak via discuss <discuss at mpich.org<mailto:discuss at mpich.org>> wrote:

Dear all,

Does anyone have any feedback on this issue? The problem still persists in MPICH-3.3 and it seems like it is pointing to a severe flaw in how MPICH handles dynamic process creation. To reiterate, the following short program using MPICH creates zombie processes indefinitely until no more processes can be created.

"""
#include <stdio.h>
#include <mpi.h>

int main(int argc, char *argv[]) {

// Initialize MPI
MPI_Init(NULL, NULL);

// Get parent
MPI_Comm parent;
MPI_Comm_get_parent(&parent);

// If the process was not spawned
if (parent == MPI_COMM_NULL) {

puts("I was not spawned!");

// Spawn child process in loop
char *cmd = argv[0];
char **cmd_argv = MPI_ARGV_NULL;
int maxprocs = 1;
MPI_Info info = MPI_INFO_NULL;
int root = 0;
MPI_Comm comm = MPI_COMM_SELF;
MPI_Comm intercomm;
int *array_of_errcodes = MPI_ERRCODES_IGNORE;

for (;;) {
MPI_Comm_spawn(cmd, cmd_argv, maxprocs, info, root, comm,
&intercomm, array_of_errcodes);

MPI_Comm_disconnect(&intercomm);
}

// If process was spawned
} else {

puts("I was spawned!");

MPI_Comm_disconnect(&parent);
}

// Finalize
MPI_Finalize();

}
"""

Thanks in advance for your help.

Best wishes,
Thomas Pak

On Oct 16 2018, at 4:57 pm, Thomas Pak <thomas.pak at maths.ox.ac.uk<mailto:thomas.pak at maths.ox.ac.uk>> wrote:

Dear all,

My MPI application spawns a large number of MPI processes using MPI_Comm_spawn over its total lifetime. Unfortunately, I have experienced that this results in zombie processes of hydra_pmi_proxy accumulating over time. As a result, my MPI application will eventually crash because there are too many zombie processes and no new processes can be created.

This issue does not seem to be new; I have found references to similar issues in at least three different places:

- [mpich-discuss] MPI_Comm_Spawn causing zombies of hydra_pmi_proxy<https://lists.mpich.org/pipermail/discuss/2013-March/000599.html> (March 2013)
- [GitHub issue] hydra_pmi_proxy zombie MPI_comm_spawn #1677<https://github.com/pmodels/mpich/issues/1677> (October 2016)
- [Google Groups] Hanging in spawn in master-slave code and hydra_pmi_proxy zombies<https://groups.google.com/forum/#!msg/mpi4py/A9mN-2UkFf8/2gnUEtArDwAJ> (December 2016)
In the first reference, a dirty fix was proposed by Silvan Brändli to simply reap all the zombie processes in a loop at the start of the function HYDU_create_process in src/pm/hydra/utils/launch/launch.c. However, I have found that this comes with its own set of problems and makes my MPI application unstable.

In the GitHub issue, the problem was marked as "worksforme". However, this problem persists for me and other machines that I have tried to reproduce it on, so it clearly has not yet been resolved.

In the Google Groups thread, the problem was "resolved" by avoiding spawning MPI processes entirely, which is not an option in my case.

Pavan Balaji mentions in the 2013 mpi-discuss thread that this issue was a problem "once upon a time". It seems to have risen from the dead again.

I have attached a short and self-contained program written in C that reproduces the problem. The program simply spawns child processes using MPI_Comm_spawn in an infinite loop, where each child process exits after writing a message to stdout. I use MPI_Comm_disconnect to disconnect the Intercommunicator, but the same problem occurs when using MPI_Comm_free instead.

I have also attached the logfiles generated while building MPICH, as described in the README, except for the file mpich-3.2.1/src/pm/hydra/tools/topo/hwloc/hwloc/config.log, as that was missing. I am using MPICH version 3.2.1, which is the latest stable release at the time of writing.

Thanks in advance for your help!

Best wishes,
Thomas Pak
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