[mpich-discuss] Compilation with AOCC - clang-8 errors unsupported options '-soname', etc.

Zhou, Hui zhouh at anl.gov
Fri Nov 8 09:24:42 CST 2019


With `—disable-shared` you didn’t solve the problem, you avoided the problem. From your `./libtool —tag=FC —config`, apparently libtool has no idea about `flang`, so it doesn’t know how to pass on the linker flags. It is strange that they took a blank default for `wl`.

`flang` is quite new, until libtool gets updated, the only solution is to patch libtool. To do it manually, if you open the libtool script (after configure), if you see `wl=‘’`, then it probably should be changed into `wl=‘-Wl,’`.

—
Hui Zhou









On Nov 8, 2019, at 6:04 AM, Je Iaa via discuss <discuss at mpich.org<mailto:discuss at mpich.org>> wrote:


Hi Thomas,

I thought I had "solved" the problem by using --disable-shared --enable-static, but then I have other issues after (with hdf5, netcdf, etc.), so back to square one...


You will find below what the ./libtool --tag=FC --config command gives, is that of any help?

Regards,

J

./libtool --tag=FC --config
# Which release of libtool.m4 was used?
macro_version=2.4.6
macro_revision=2.4.6
# Whether or not to build shared libraries.
build_libtool_libs=yes
# Whether or not to build static libraries.
build_old_libs=yes
# What type of objects to build.
pic_mode=default
# Whether or not to optimize for fast installation.
fast_install=yes
# Shared archive member basename,for filename based shared library versioning on AIX.
shared_archive_member_spec=
# Shell to use when invoking shell scripts.
SHELL="/bin/sh"
# An echo program that protects backslashes.
ECHO="printf %s\\n"
# The PATH separator for the build system.
PATH_SEPARATOR=":"
# The host system.
host_alias=
host=x86_64-unknown-linux-gnu
host_os=linux-gnu
# The build system.
build_alias=
build=x86_64-unknown-linux-gnu
build_os=linux-gnu
# A sed program that does not truncate output.
SED="/usr/bin/sed"
# Sed that helps us avoid accidentally triggering echo(1) options like -n.
Xsed="$SED -e 1s/^X//"
# A grep program that handles long lines.
GREP="/usr/bin/grep"
# An ERE matcher.
EGREP="/usr/bin/grep -E"
# A literal string matcher.
FGREP="/usr/bin/grep -F"
# A BSD- or MS-compatible name lister.
NM="/usr/bin/nm -B"
# Whether we need soft or hard links.
LN_S="ln -s"
# What is the maximum length of a command?
max_cmd_len=1572864
# Object file suffix (normally "o").
objext=o
# Executable file suffix (normally "").
exeext=
# whether the shell understands "unset".
lt_unset=unset
# turn spaces into newlines.
SP2NL="tr \\040 \\012"
# turn newlines into spaces.
NL2SP="tr \\015\\012 \\040\\040"
# convert $build file names to $host format.
to_host_file_cmd=func_convert_file_noop
# convert $build files to toolchain format.
to_tool_file_cmd=func_convert_file_noop
# An object symbol dumper.
OBJDUMP="objdump"
# Method to check whether dependent libraries are shared objects.
deplibs_check_method="pass_all"
# Command to use when deplibs_check_method = "file_magic".
file_magic_cmd="\$MAGIC_CMD"
# How to find potential files when deplibs_check_method = "file_magic".
file_magic_glob=""
# Find potential files using nocaseglob when deplibs_check_method = "file_magic".
want_nocaseglob="no"
# DLL creation program.
DLLTOOL="false"
# Command to associate shared and link libraries.
sharedlib_from_linklib_cmd="printf %s\\n"
# The archiver.
AR="ar"
# Flags to create an archive.
AR_FLAGS="cr"
# How to feed a file listing to the archiver.
archiver_list_spec="@"
# A symbol stripping program.
STRIP="strip"
# Commands used to install an old-style archive.
RANLIB="ranlib"
old_postinstall_cmds="chmod 644 \$oldlib~\$RANLIB \$tool_oldlib"
old_postuninstall_cmds=""
# Whether to use a lock for old archive extraction.
lock_old_archive_extraction=no
# A C compiler.
LTCC="clang"
# LTCC compiler flags.
LTCFLAGS="   -O2"
# Take the output of nm and produce a listing of raw symbols and C names.
global_symbol_pipe="sed -n -e 's/^.*[    ]\\([ABCDGIRSTW][ABCDGIRSTW]*\\)[       ][      ]*\\([_A-Za-z][_A-Za-z0-9]*\\)\$/\\1 \\2 \\2/p' | sed '/ __gnu_lto/d'"
# Transform the output of nm in a proper C declaration.
global_symbol_to_cdecl="sed -n -e 's/^T .* \\(.*\\)\$/extern int \\1();/p' -e 's/^[ABCDGIRSTW][ABCDGIRSTW]* .* \\(.*\\)\$/extern char \\1;/p'"
# Transform the output of nm into a list of symbols to manually relocate.
global_symbol_to_import=""
# Transform the output of nm in a C name address pair.
global_symbol_to_c_name_address="sed -n -e 's/^: \\(.*\\) .*\$/  {\"\\1\", (void *) 0},/p' -e 's/^[ABCDGIRSTW][ABCDGIRSTW]* .* \\(.*\\)\$/  {\"\\1\", (void *) \\&\\1},/p'"
# Transform the output of nm in a C name address pair when lib prefix is needed.
global_symbol_to_c_name_address_lib_prefix="sed -n -e 's/^: \\(.*\\) .*\$/  {\"\\1\", (void *) 0},/p' -e 's/^[ABCDGIRSTW][ABCDGIRSTW]* .* \\(lib.*\\)\$/  {\"\\1\", (void *) \\&\\1},/p' -e 's/^[ABCDGIRSTW][ABCDGIRSTW]* .* \\(.*\\)\$/  {\"lib\\1\", (void *) \\&\\1},/p'"
# The name lister interface.
nm_interface="BSD nm"
# Specify filename containing input files for $NM.
nm_file_list_spec="@"
# The root where to search for dependent libraries,and where our libraries should be installed.
lt_sysroot=
# Command to truncate a binary pipe.
lt_truncate_bin="/usr/bin/dd bs=4096 count=1"
# The name of the directory that contains temporary libtool files.
objdir=.libs
# Used to examine libraries when file_magic_cmd begins with "file".
MAGIC_CMD=file
# Must we lock files when doing compilation?
need_locks="no"
# Manifest tool.
MANIFEST_TOOL=":"
# Tool to manipulate archived DWARF debug symbol files on Mac OS X.
DSYMUTIL=""
# Tool to change global to local symbols on Mac OS X.
NMEDIT=""
# Tool to manipulate fat objects and archives on Mac OS X.
LIPO=""
# ldd/readelf like tool for Mach-O binaries on Mac OS X.
OTOOL=""
# ldd/readelf like tool for 64 bit Mach-O binaries on Mac OS X 10.4.
OTOOL64=""
# Old archive suffix (normally "a").
libext=a
# Shared library suffix (normally ".so").
shrext_cmds=".so"
# The commands to extract the exported symbol list from a shared archive.
extract_expsyms_cmds=""
# Variables whose values should be saved in libtool wrapper scripts and
# restored at link time.
variables_saved_for_relink="PATH LD_LIBRARY_PATH LD_RUN_PATH"
# Do we need the "lib" prefix for modules?
need_lib_prefix=no
# Do we need a version for libraries?
need_version=no
# Library versioning type.
version_type=linux
# Shared library runtime path variable.
runpath_var=LD_RUN_PATH
# Shared library path variable.
shlibpath_var=LD_LIBRARY_PATH
# Is shlibpath searched before the hard-coded library search path?
shlibpath_overrides_runpath=no
# Format of library name prefix.
libname_spec="lib\$name"
# List of archive names.  First name is the real one, the rest are links.
# The last name is the one that the linker finds with -lNAME
library_names_spec="\$libname\$release\$shared_ext\$versuffix \$libname\$release\$shared_ext\$major \$libname\$shared_ext"
# The coded name of the library, if different from the real name.
soname_spec="\$libname\$release\$shared_ext\$major"
# Permission mode override for installation of shared libraries.
install_override_mode=""
# Command to use after installation of a shared archive.
postinstall_cmds=""
# Command to use after uninstallation of a shared archive.
postuninstall_cmds=""
# Commands used to finish a libtool library installation in a directory.
finish_cmds="PATH=\\\"\\\$PATH:/sbin\\\" ldconfig -n \$libdir"
# As "finish_cmds", except a single script fragment to be evaled but
# not shown.
finish_eval=""
# Whether we should hardcode library paths into libraries.
hardcode_into_libs=yes
# Compile-time system search path for libraries.
sys_lib_search_path_spec="/opt/modules/src/aocc-compiler-2.0.0/lib/clang/8.0.0 /usr/lib/gcc/x86_64-redhat-linux/4.8.5 /usr/lib64 /lib64 /usr/lib /opt/modules/src/aocc-compiler-2.0.0/lib /lib "
# Detected run-time system search path for libraries.
sys_lib_dlsearch_path_spec="/usr/lib64//bind9-export /usr/lib64/dyninst /usr/lib64/mysql /lib /lib64 /lib/sse2 /lib64/sse2 /lib64/tls "
# Explicit LT_SYS_LIBRARY_PATH set during ./configure time.
configure_time_lt_sys_library_path=""
# Whether dlopen is supported.
dlopen_support=unknown
# Whether dlopen of programs is supported.
dlopen_self=unknown
# Whether dlopen of statically linked programs is supported.
dlopen_self_static=unknown
# Commands to strip libraries.
old_striplib="strip --strip-debug"
striplib="strip --strip-unneeded"

# The linker used to build libraries.
LD="/usr/bin/ld -m elf_x86_64"
# How to create reloadable object files.
reload_flag=" -r"
reload_cmds="\$LD\$reload_flag -o \$output\$reload_objs"
# Commands used to build an old-style archive.
old_archive_cmds="\$AR \$AR_FLAGS \$oldlib\$oldobjs~\$RANLIB \$tool_oldlib"
# A language specific compiler.
CC="clang"
# Is the compiler the GNU compiler?
with_gcc=yes
# Compiler flag to turn off builtin functions.
no_builtin_flag=" -fno-builtin -fno-rtti -fno-exceptions"
# Additional compiler flags for building library objects.
pic_flag=" -fPIC -DPIC"
# How to pass a linker flag through the compiler.
wl="-Wl,"
# Compiler flag to prevent dynamic linking.
link_static_flag=""
# Does compiler simultaneously support -c and -o options?
compiler_c_o="yes"
# Whether or not to add -lc for building shared libraries.
build_libtool_need_lc=no
# Whether or not to disallow shared libs when runtime libs are static.
allow_libtool_libs_with_static_runtimes=no
# Compiler flag to allow reflexive dlopens.
export_dynamic_flag_spec="\$wl--export-dynamic"
# Compiler flag to generate shared objects directly from archives.
whole_archive_flag_spec="\$wl--whole-archive\$convenience \$wl--no-whole-archive"
# Whether the compiler copes with passing no objects directly.
compiler_needs_object="no"
# Create an old-style archive from a shared archive.
old_archive_from_new_cmds=""
# Create a temporary old-style archive to link instead of a shared archive.
old_archive_from_expsyms_cmds=""
# Commands used to build a shared archive.
archive_cmds="\$CC -shared \$pic_flag \$libobjs \$deplibs \$compiler_flags \$wl-soname \$wl\$soname -o \$lib"
archive_expsym_cmds="echo \\\"{ global:\\\" > \$output_objdir/\$libname.ver~
            cat \$export_symbols | sed -e \\\"s/\\\\(.*\\\\)/\\\\1;/\\\" >> \$output_objdir/\$libname.ver~
            echo \\\"local: *; };\\\" >> \$output_objdir/\$libname.ver~
            \$CC -shared \$pic_flag \$libobjs \$deplibs \$compiler_flags \$wl-soname \$wl\$soname \$wl-version-script \$wl\$output_objdir/\$libname.ver -o \$lib"
# Commands used to build a loadable module if different from building
# a shared archive.
module_cmds=""
module_expsym_cmds=""
# Whether we are building with GNU ld or not.
with_gnu_ld="yes"
# Flag that allows shared libraries with undefined symbols to be built.
allow_undefined_flag=""
# Flag that enforces no undefined symbols.
no_undefined_flag=""
# Flag to hardcode $libdir into a binary during linking.
# This must work even if $libdir does not exist
hardcode_libdir_flag_spec="\$wl-rpath \$wl\$libdir"
# Whether we need a single "-rpath" flag with a separated argument.
hardcode_libdir_separator=""
# Set to "yes" if using DIR/libNAME$shared_ext during linking hardcodes
# DIR into the resulting binary.
hardcode_direct=no
# Set to "yes" if using DIR/libNAME$shared_ext during linking hardcodes
# DIR into the resulting binary and the resulting library dependency is
# "absolute",i.e impossible to change by setting $shlibpath_var if the
# library is relocated.
hardcode_direct_absolute=no
# Set to "yes" if using the -LDIR flag during linking hardcodes DIR
# into the resulting binary.
hardcode_minus_L=no
# Set to "yes" if using SHLIBPATH_VAR=DIR during linking hardcodes DIR
# into the resulting binary.
hardcode_shlibpath_var=unsupported
# Set to "yes" if building a shared library automatically hardcodes DIR
# into the library and all subsequent libraries and executables linked
# against it.
hardcode_automatic=no
# Set to yes if linker adds runtime paths of dependent libraries
# to runtime path list.
inherit_rpath=no
# Whether libtool must link a program against all its dependency libraries.
link_all_deplibs=unknown
# Set to "yes" if exported symbols are required.
always_export_symbols=no
# The commands to list exported symbols.
export_symbols_cmds="\$NM \$libobjs \$convenience | \$global_symbol_pipe | \$SED 's/.* //' | sort | uniq > \$export_symbols"
# Symbols that should not be listed in the preloaded symbols.
exclude_expsyms="_GLOBAL_OFFSET_TABLE_|_GLOBAL__F[ID]_.*"
# Symbols that must always be exported.
include_expsyms=""
# Commands necessary for linking programs (against libraries) with templates.
prelink_cmds=""
# Commands necessary for finishing linking programs.
postlink_cmds=""
# Specify filename containing input files.
file_list_spec=""
# How to hardcode a shared library path into an executable.
hardcode_action=immediate
# The directories searched by this compiler when creating a shared library.
compiler_lib_search_dirs=""
# Dependencies to place before and after the objects being linked to
# create a shared library.
predep_objects=""
postdep_objects=""
predeps=""
postdeps=""
# The library search path used internally by the compiler when linking
# a shared library.
compiler_lib_search_path=""
# ### BEGIN LIBTOOL TAG CONFIG: FC
# The linker used to build libraries.
LD="/usr/bin/ld -m elf_x86_64"
# How to create reloadable object files.
reload_flag=" -r"
reload_cmds="\$LD\$reload_flag -o \$output\$reload_objs"
# Commands used to build an old-style archive.
old_archive_cmds="\$AR \$AR_FLAGS \$oldlib\$oldobjs~\$RANLIB \$tool_oldlib"
# A language specific compiler.
CC="flang"
# Is the compiler the GNU compiler?
with_gcc=no
# Compiler flag to turn off builtin functions.
no_builtin_flag=""
# Additional compiler flags for building library objects.
pic_flag=""
# How to pass a linker flag through the compiler.
wl=""
# Compiler flag to prevent dynamic linking.
link_static_flag=""
# Does compiler simultaneously support -c and -o options?
compiler_c_o="yes"
# Whether or not to add -lc for building shared libraries.
build_libtool_need_lc=no
# Whether or not to disallow shared libs when runtime libs are static.
allow_libtool_libs_with_static_runtimes=no
# Compiler flag to allow reflexive dlopens.
export_dynamic_flag_spec="\$wl--export-dynamic"
# Compiler flag to generate shared objects directly from archives.
whole_archive_flag_spec="\$wl--whole-archive\$convenience \$wl--no-whole-archive"
# Whether the compiler copes with passing no objects directly.
compiler_needs_object="no"
# Create an old-style archive from a shared archive.
old_archive_from_new_cmds=""
# Create a temporary old-style archive to link instead of a shared archive.
old_archive_from_expsyms_cmds=""
# Commands used to build a shared archive.
archive_cmds="\$CC -shared \$pic_flag \$libobjs \$deplibs \$compiler_flags \$wl-soname \$wl\$soname -o \$lib"
archive_expsym_cmds="echo \\\"{ global:\\\" > \$output_objdir/\$libname.ver~
            cat \$export_symbols | sed -e \\\"s/\\\\(.*\\\\)/\\\\1;/\\\" >> \$output_objdir/\$libname.ver~
            echo \\\"local: *; };\\\" >> \$output_objdir/\$libname.ver~
            \$CC -shared \$pic_flag \$libobjs \$deplibs \$compiler_flags \$wl-soname \$wl\$soname \$wl-version-script \$wl\$output_objdir/\$libname.ver -o \$lib"
# Commands used to build a loadable module if different from building
# a shared archive.
module_cmds=""
module_expsym_cmds=""
# Whether we are building with GNU ld or not.
with_gnu_ld="yes"
# Flag that allows shared libraries with undefined symbols to be built.
allow_undefined_flag=""
# Flag that enforces no undefined symbols.
no_undefined_flag=""
# Flag to hardcode $libdir into a binary during linking.
# This must work even if $libdir does not exist
hardcode_libdir_flag_spec="\$wl-rpath \$wl\$libdir"
# Whether we need a single "-rpath" flag with a separated argument.
hardcode_libdir_separator=""
# Set to "yes" if using DIR/libNAME$shared_ext during linking hardcodes
# DIR into the resulting binary.
hardcode_direct=no
# Set to "yes" if using DIR/libNAME$shared_ext during linking hardcodes
# DIR into the resulting binary and the resulting library dependency is
# "absolute",i.e impossible to change by setting $shlibpath_var if the
# library is relocated.
hardcode_direct_absolute=no
# Set to "yes" if using the -LDIR flag during linking hardcodes DIR
# into the resulting binary.
hardcode_minus_L=no
# Set to "yes" if using SHLIBPATH_VAR=DIR during linking hardcodes DIR
# into the resulting binary.
hardcode_shlibpath_var=unsupported
# Set to "yes" if building a shared library automatically hardcodes DIR
# into the library and all subsequent libraries and executables linked
# against it.
hardcode_automatic=no
# Set to yes if linker adds runtime paths of dependent libraries
# to runtime path list.
inherit_rpath=no
# Whether libtool must link a program against all its dependency libraries.
link_all_deplibs=unknown
# Set to "yes" if exported symbols are required.
always_export_symbols=no
# The commands to list exported symbols.
export_symbols_cmds="\$NM \$libobjs \$convenience | \$global_symbol_pipe | \$SED 's/.* //' | sort | uniq > \$export_symbols"
# Symbols that should not be listed in the preloaded symbols.
exclude_expsyms="_GLOBAL_OFFSET_TABLE_|_GLOBAL__F[ID]_.*"
# Symbols that must always be exported.
include_expsyms=""
# Commands necessary for linking programs (against libraries) with templates.
prelink_cmds=""
# Commands necessary for finishing linking programs.
postlink_cmds=""
# Specify filename containing input files.
file_list_spec=""
# How to hardcode a shared library path into an executable.
hardcode_action=immediate
# The directories searched by this compiler when creating a shared library.
compiler_lib_search_dirs="/usr/lib/gcc/x86_64-redhat-linux/4.8.5 /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64 /lib/../lib64 /usr/lib/../lib64 /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../.. /opt/modules/src/aocc-compiler-2.0.0/bin/../lib /lib /usr/lib"
# Dependencies to place before and after the objects being linked to
# create a shared library.
predep_objects="/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.8.5/crtbeginS.o"
postdep_objects="/usr/lib/gcc/x86_64-redhat-linux/4.8.5/crtendS.o /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/crtn.o"
predeps=""
postdeps="-lflangmain -L/usr/lib -L/usr/lib64 -L/opt/modules/src/aocc-compiler-2.0.0/lib -L/opt/modules/src/aocc-compiler-2.0.0/lib32 -L. -lpgmath -lflang -lflangrti -lompstub -lm -lrt -lpthread -lgcc_s -lgcc -lc -lgcc_s -lgcc"
# The library search path used internally by the compiler when linking
# a shared library.
compiler_lib_search_path="-L/usr/lib/gcc/x86_64-redhat-linux/4.8.5 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../.. -L/opt/modules/src/aocc-compiler-2.0.0/bin/../lib -L/lib -L/usr/lib"
# ### END LIBTOOL TAG CONFIG: FC


Sent: Friday, November 08, 2019 at 12:02 PM
From: "Thomas Jahns via discuss" <discuss at mpich.org<mailto:discuss at mpich.org>>
To: discuss at mpich.org<mailto:discuss at mpich.org>
Cc: "Thomas Jahns" <jahns at dkrz.de<mailto:jahns at dkrz.de>>
Subject: Re: [mpich-discuss] Compilation with AOCC - clang-8 errors unsupported options '-soname', etc.
On 11/7/19 6:37 PM, Zhou, Hui via discuss wrote:
> The attached log does not show libtool options. Is it possible to
> reproduce and obtain the output of `./libtool —config`?

I think

./libtool --tag=FC --config

might be more interesting?

Thomas



>
>> Hui Zhou
>
>
>
>
>
>
>
>
>
>> On Nov 7, 2019, at 11:22 AM, Je Iaa <jeiaa at gmx.com<mailto:jeiaa at gmx.com>
>> <mailto:jeiaa at gmx.com>> wrote:
>>
>> Hi Hui,
>> Thank you for looking into this.
>> You will find the log attached.
>> Regards,
>> J
>> *Sent:* Thursday, November 07, 2019 at 5:03 PM
>> *From:* "Zhou, Hui" <zhouh at anl.gov<mailto:zhouh at anl.gov> <mailto:zhouh at anl.gov>>
>> *To:* "discuss at mpich.org<mailto:discuss at mpich.org> <mailto:discuss at mpich.org>"
>> <discuss at mpich.org<mailto:discuss at mpich.org> <mailto:discuss at mpich.org>>
>> *Cc:* "Je Iaa" <jeiaa at gmx.com<mailto:jeiaa at gmx.com> <mailto:jeiaa at gmx.com>>
>> *Subject:* Re: [mpich-discuss] Compilation with AOCC - clang-8 errors
>> unsupported options '-soname', etc.
>> Those options are libtool options that supposed to be passed down to
>> linker. It looks like the libtool is misconfigured. Could you do `make
>> V=1` and attach a more verbose log?
>>>> Hui Zhou
>>
>> On Nov 7, 2019, at 9:53 AM, Je Iaa via discuss <discuss at mpich.org<mailto:discuss at mpich.org>
>> <mailto:discuss at mpich.org>> wrote:
>> Hi,
>> I am trying without success to install mpich3.3.1 on virtual
>> machine with AMD EPYC Processors and the AOCC2.0.0 compiler.
>> This is what I did and the error I get:
>> export PREFIX=/opt/modules/packages
>> export MPICH_HOME=$PREFIX/mpich/3.3.1-aocc2.0.0
>> export CC=clang
>> export CXX=clang++
>> export FC=flang
>> export F77=flang
>>
>> mkdir -p $MPICH_HOME
>> tar xvf mpich-3.3.1.tar.gz
>> cd mpich-3.3.1
>> ./configure --prefix=$MPICH_HOME
>>
>> make
>> Failed:
>> clang-8: error: unsupported option '--whole-archive'
>> clang-8: error: unsupported option '--no-whole-archive'
>> clang-8: error: unknown argument: '-soname'
>> clang-8: error: no such file or directory: 'libmpi.so.12'
>> make[2]: *** [lib/libmpi.la<http://libmpi.la> <http://libmpi.la/>] Error 1
>> make[2]: Leaving directory `/opt/modules/src/mpich-3.3.1'
>> make[1]: *** [all-recursive] Error 1
>> make[1]: Leaving directory `/opt/modules/src/mpich-3.3.1'
>> make: *** [all] Error 2
>> Any idea how to sort this out?
>> Regards,
>> J
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>
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--
Thomas Jahns
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Abteilung Anwendungssoftware

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Phone: +49 40 460094-151
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