[mpich-devel] hwloc build failing on Mac with GCC

David Goodell (dgoodell) dgoodell at cisco.com
Thu Aug 1 08:57:44 CDT 2013 

>From the error message, this is the sort of thing that usually shows up when "-arch x86_64" and "-arch i386" flags get dropped or mismatched somewhere in configure.  Sometimes it's an "-m32"/"-m64" issue instead.

----8<----
  CCLD     hydra_persist
ld: warning: ignoring file /Users/jhammond/eclipse/MPICH2/git/build-gcc/src/pm/hydra/tools/topo/hwloc/hwloc/src/.libs/libhwloc_embedded.a, file was built for archive which is not the architecture being linked (x86_64): /Users/jhammond/eclipse/MPICH2/git/build-gcc/src/pm/hydra/tools/topo/hwloc/hwloc/src/.libs/libhwloc_embedded.a
Undefined symbols for architecture x86_64:
----8<----

One source of such a mismatch for me in the past has been differing 32/64 defaults between my C compiler and my Fortran compiler, though that doesn't seem likely in this case because:

1) all of your compilers are from MacPorts and presumably should have the same default;

2) this is an hydra/hwloc build error, so Fortran probably isn't entering into this.

"make clean", rebuild with V=1, and check for compiler argument mismatch between the hwloc files and the hydra files.

-Dave

On Aug 1, 2013, at 8:28 AM, Wesley Bland <wbland at mcs.anl.gov> wrote:

> I used the exact same setup without an issue. I'm not sure what's going on. 
> 
> On August 1, 2013 at 8:22:03 AM, Wesley Bland (wbland at mcs.anl.gov) wrote:
> 
>> 10.7.4 is the OS version, not the kernel version. I'm building on my laptop on the same version as you without any issues. I've been using GCC as well, but I'll try your exact config to see if something different happens for me.
>> 
>> Wesley
>> 
>> On July 31, 2013 at 6:33:34 PM, Jeff Hammond (jhammond at alcf.anl.gov) wrote:
>> 
>>> How different is 11.4.2 from 10.7.4? Seems like a big diff in the OS dimension. 
>>> 
>>> I'd really like to try to narrow this down because I'm currently blocked on this w.r.t. an app I'm trying to run. 
>>> 
>>> Jeff 
>>> 
>>> ----- Original Message ----- 
>>> > From: "Ken Raffenetti" <raffenet at mcs.anl.gov> 
>>> > To: devel at mpich.org 
>>> > Sent: Wednesday, July 31, 2013 5:40:55 PM 
>>> > Subject: Re: [mpich-devel] hwloc build failing on Mac with GCC 
>>> > 
>>> > I'll just note that building on our OSX 10.7.4 test environment 
>>> > doesn't show any issues in this configuration. 
>>> > 
>>> > ----- Original Message ----- 
>>> > > From: "Jeff Hammond" <jhammond at alcf.anl.gov> 
>>> > > To: devel at mpich.org 
>>> > > Sent: Wednesday, July 31, 2013 4:00:59 PM 
>>> > > Subject: Re: [mpich-devel] hwloc build failing on Mac with GCC 
>>> > > 
>>> > > Yes, that's right. Sorry. It's attached. 
>>> > > 
>>> > > Jeff 
>>> > > 
>>> > > ----- Original Message ----- 
>>> > > > From: "Ken Raffenetti" <raffenet at mcs.anl.gov> 
>>> > > > To: devel at mpich.org 
>>> > > > Sent: Wednesday, July 31, 2013 3:51:01 PM 
>>> > > > Subject: Re: [mpich-devel] hwloc build failing on Mac with GCC 
>>> > > > 
>>> > > > Maybe I'm missing something, but I fail to find a problem in the 
>>> > > > attachment. Did you mean to attach a make log? 
>>> > > > 
>>> > > > ----- Original Message ----- 
>>> > > > > From: "Jeff Hammond" <jhammond at alcf.anl.gov> 
>>> > > > > To: "MPICH" <devel at mpich.org> 
>>> > > > > Sent: Wednesday, July 31, 2013 2:43:55 PM 
>>> > > > > Subject: [mpich-devel] hwloc build failing on Mac with GCC 
>>> > > > > 
>>> > > > > Am I stupid or is something broken? This is the git head as of 
>>> > > > > a 
>>> > > > > few 
>>> > > > > minutes ago. 
>>> > > > > 
>>> > > > > Note that the essence of the problem is in the attachment. I 
>>> > > > > will 
>>> > > > > not 
>>> > > > > repeat it here. 
>>> > > > > 
>>> > > > > Thanks, 
>>> > > > > 
>>> > > > > Jeff 
>>> > > > > 
>>> > > > > Jeffs-MacBook-Pro:build-gcc jhammond$ gcc -v 
>>> > > > > Using built-in specs. 
>>> > > > > COLLECT_GCC=gcc 
>>> > > > > COLLECT_LTO_WRAPPER=/opt/local/libexec/gcc/x86_64-apple-darwin11/4.8.1/lto-wrapper 
>>> > > > > Target: x86_64-apple-darwin11 
>>> > > > > Configured with: ../gcc-4.8.1/configure --prefix=/opt/local 
>>> > > > > --build=x86_64-apple-darwin11 
>>> > > > > --enable-languages=c,c++,objc,obj-c++,lto,fortran,java 
>>> > > > > --libdir=/opt/local/lib/gcc48 
>>> > > > > --includedir=/opt/local/include/gcc48 
>>> > > > > --infodir=/opt/local/share/info --mandir=/opt/local/share/man 
>>> > > > > --datarootdir=/opt/local/share/gcc-4.8 
>>> > > > > --with-local-prefix=/opt/local 
>>> > > > > --with-system-zlib --disable-nls --program-suffix=-mp-4.8 
>>> > > > > --with-gxx-include-dir=/opt/local/include/gcc48/c++/ 
>>> > > > > --with-gmp=/opt/local --with-mpfr=/opt/local 
>>> > > > > --with-mpc=/opt/local 
>>> > > > > --with-ppl=/opt/local --with-cloog=/opt/local 
>>> > > > > --enable-cloog-backend=isl --disable-cloog-version-check 
>>> > > > > --enable-stage1-checking --disable-multilib --enable-lto 
>>> > > > > --enable-libstdcxx-time --with-as=/opt/local/bin/as 
>>> > > > > --with-ld=/opt/local/bin/ld --with-ar=/opt/local/bin/ar 
>>> > > > > --with-bugurl=https://trac.macports.org/newticket 
>>> > > > > --with-pkgversion='MacPorts gcc48 4.8.1_1' 
>>> > > > > Thread model: posix 
>>> > > > > gcc version 4.8.1 (MacPorts gcc48 4.8.1_1) 
>>> > > > > Jeffs-MacBook-Pro:build-gcc jhammond$ g++ -v 
>>> > > > > Using built-in specs. 
>>> > > > > COLLECT_GCC=g++ 
>>> > > > > COLLECT_LTO_WRAPPER=/opt/local/libexec/gcc/x86_64-apple-darwin11/4.8.1/lto-wrapper 
>>> > > > > Target: x86_64-apple-darwin11 
>>> > > > > Configured with: ../gcc-4.8.1/configure --prefix=/opt/local 
>>> > > > > --build=x86_64-apple-darwin11 
>>> > > > > --enable-languages=c,c++,objc,obj-c++,lto,fortran,java 
>>> > > > > --libdir=/opt/local/lib/gcc48 
>>> > > > > --includedir=/opt/local/include/gcc48 
>>> > > > > --infodir=/opt/local/share/info --mandir=/opt/local/share/man 
>>> > > > > --datarootdir=/opt/local/share/gcc-4.8 
>>> > > > > --with-local-prefix=/opt/local 
>>> > > > > --with-system-zlib --disable-nls --program-suffix=-mp-4.8 
>>> > > > > --with-gxx-include-dir=/opt/local/include/gcc48/c++/ 
>>> > > > > --with-gmp=/opt/local --with-mpfr=/opt/local 
>>> > > > > --with-mpc=/opt/local 
>>> > > > > --with-ppl=/opt/local --with-cloog=/opt/local 
>>> > > > > --enable-cloog-backend=isl --disable-cloog-version-check 
>>> > > > > --enable-stage1-checking --disable-multilib --enable-lto 
>>> > > > > --enable-libstdcxx-time --with-as=/opt/local/bin/as 
>>> > > > > --with-ld=/opt/local/bin/ld --with-ar=/opt/local/bin/ar 
>>> > > > > --with-bugurl=https://trac.macports.org/newticket 
>>> > > > > --with-pkgversion='MacPorts gcc48 4.8.1_1' 
>>> > > > > Thread model: posix 
>>> > > > > gcc version 4.8.1 (MacPorts gcc48 4.8.1_1) 
>>> > > > > Jeffs-MacBook-Pro:build-gcc jhammond$ gfortran -v 
>>> > > > > Using built-in specs. 
>>> > > > > COLLECT_GCC=gfortran 
>>> > > > > COLLECT_LTO_WRAPPER=/opt/local/libexec/gcc/x86_64-apple-darwin11/4.8.1/lto-wrapper 
>>> > > > > Target: x86_64-apple-darwin11 
>>> > > > > Configured with: ../gcc-4.8.1/configure --prefix=/opt/local 
>>> > > > > --build=x86_64-apple-darwin11 
>>> > > > > --enable-languages=c,c++,objc,obj-c++,lto,fortran,java 
>>> > > > > --libdir=/opt/local/lib/gcc48 
>>> > > > > --includedir=/opt/local/include/gcc48 
>>> > > > > --infodir=/opt/local/share/info --mandir=/opt/local/share/man 
>>> > > > > --datarootdir=/opt/local/share/gcc-4.8 
>>> > > > > --with-local-prefix=/opt/local 
>>> > > > > --with-system-zlib --disable-nls --program-suffix=-mp-4.8 
>>> > > > > --with-gxx-include-dir=/opt/local/include/gcc48/c++/ 
>>> > > > > --with-gmp=/opt/local --with-mpfr=/opt/local 
>>> > > > > --with-mpc=/opt/local 
>>> > > > > --with-ppl=/opt/local --with-cloog=/opt/local 
>>> > > > > --enable-cloog-backend=isl --disable-cloog-version-check 
>>> > > > > --enable-stage1-checking --disable-multilib --enable-lto 
>>> > > > > --enable-libstdcxx-time --with-as=/opt/local/bin/as 
>>> > > > > --with-ld=/opt/local/bin/ld --with-ar=/opt/local/bin/ar 
>>> > > > > --with-bugurl=https://trac.macports.org/newticket 
>>> > > > > --with-pkgversion='MacPorts gcc48 4.8.1_1' 
>>> > > > > Thread model: posix 
>>> > > > > gcc version 4.8.1 (MacPorts gcc48 4.8.1_1) 
>>> > > > > Jeffs-MacBook-Pro:build-gcc jhammond$ uname -a 
>>> > > > > Darwin Jeffs-MacBook-Pro.local 11.4.2 Darwin Kernel Version 
>>> > > > > 11.4.2: 
>>> > > > > Thu Aug 23 16:25:48 PDT 2012; 
>>> > > > > root:xnu-1699.32.7~1/RELEASE_X86_64 
>>> > > > > x86_64 
>>> > > > > 
>>> > > > > -- 
>>> > > > > Jeff Hammond 
>>> > > > > Argonne Leadership Computing Facility 
>>> > > > > University of Chicago Computation Institute 
>>> > > > > jhammond at alcf.anl.gov / (630) 252-5381 
>>> > > > > http://www.linkedin.com/in/jeffhammond 
>>> > > > > https://wiki.alcf.anl.gov/parts/index.php/User:Jhammond 
>>> > > > > ALCF docs: http://www.alcf.anl.gov/user-guides 
>>> > > > > 
>>> > > > 
>>> > > 
>>> > > -- 
>>> > > Jeff Hammond 
>>> > > Argonne Leadership Computing Facility 
>>> > > University of Chicago Computation Institute 
>>> > > jhammond at alcf.anl.gov / (630) 252-5381 
>>> > > http://www.linkedin.com/in/jeffhammond 
>>> > > https://wiki.alcf.anl.gov/parts/index.php/User:Jhammond 
>>> > > ALCF docs: http://www.alcf.anl.gov/user-guides 
>>> > > 
>>> > > 
>>> > 
>>> 
>>> -- 
>>> Jeff Hammond 
>>> Argonne Leadership Computing Facility 
>>> University of Chicago Computation Institute 
>>> jhammond at alcf.anl.gov / (630) 252-5381 
>>> http://www.linkedin.com/in/jeffhammond 
>>> https://wiki.alcf.anl.gov/parts/index.php/User:Jhammond 
>>> ALCF docs: http://www.alcf.anl.gov/user-guides 
>> 
>> 
> 
>

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