[mpich-devel] hwloc build failing on Mac with GCC

Jeff Hammond jhammond at alcf.anl.gov
Thu Aug 1 09:33:46 CDT 2013 

I didn't ./autogen.sh after my git update.  Maybe that's the issue.  Anyways, I'm doing that now and then following Dave's instructions.

Jeff

----- Original Message -----
> From: "David Goodell (dgoodell)" <dgoodell at cisco.com>
> To: "<devel at mpich.org>" <devel at mpich.org>
> Cc: "Jeff Hammond" <jhammond at alcf.anl.gov>
> Sent: Thursday, August 1, 2013 8:57:44 AM
> Subject: Re: [mpich-devel] hwloc build failing on Mac with GCC
> 
> From the error message, this is the sort of thing that usually shows
> up when "-arch x86_64" and "-arch i386" flags get dropped or
> mismatched somewhere in configure.  Sometimes it's an "-m32"/"-m64"
> issue instead.
> 
> ----8<----
>   CCLD     hydra_persist
> ld: warning: ignoring file
> /Users/jhammond/eclipse/MPICH2/git/build-gcc/src/pm/hydra/tools/topo/hwloc/hwloc/src/.libs/libhwloc_embedded.a,
> file was built for archive which is not the architecture being
> linked (x86_64):
> /Users/jhammond/eclipse/MPICH2/git/build-gcc/src/pm/hydra/tools/topo/hwloc/hwloc/src/.libs/libhwloc_embedded.a
> Undefined symbols for architecture x86_64:
> ----8<----
> 
> One source of such a mismatch for me in the past has been differing
> 32/64 defaults between my C compiler and my Fortran compiler, though
> that doesn't seem likely in this case because:
> 
> 1) all of your compilers are from MacPorts and presumably should have
> the same default;
> 
> 2) this is an hydra/hwloc build error, so Fortran probably isn't
> entering into this.
> 
> "make clean", rebuild with V=1, and check for compiler argument
> mismatch between the hwloc files and the hydra files.
> 
> -Dave
> 
> On Aug 1, 2013, at 8:28 AM, Wesley Bland <wbland at mcs.anl.gov> wrote:
> 
> > I used the exact same setup without an issue. I'm not sure what's
> > going on.
> > 
> > On August 1, 2013 at 8:22:03 AM, Wesley Bland (wbland at mcs.anl.gov)
> > wrote:
> > 
> >> 10.7.4 is the OS version, not the kernel version. I'm building on
> >> my laptop on the same version as you without any issues. I've
> >> been using GCC as well, but I'll try your exact config to see if
> >> something different happens for me.
> >> 
> >> Wesley
> >> 
> >> On July 31, 2013 at 6:33:34 PM, Jeff Hammond
> >> (jhammond at alcf.anl.gov) wrote:
> >> 
> >>> How different is 11.4.2 from 10.7.4? Seems like a big diff in the
> >>> OS dimension.
> >>> 
> >>> I'd really like to try to narrow this down because I'm currently
> >>> blocked on this w.r.t. an app I'm trying to run.
> >>> 
> >>> Jeff
> >>> 
> >>> ----- Original Message -----
> >>> > From: "Ken Raffenetti" <raffenet at mcs.anl.gov>
> >>> > To: devel at mpich.org
> >>> > Sent: Wednesday, July 31, 2013 5:40:55 PM
> >>> > Subject: Re: [mpich-devel] hwloc build failing on Mac with GCC
> >>> > 
> >>> > I'll just note that building on our OSX 10.7.4 test environment
> >>> > doesn't show any issues in this configuration.
> >>> > 
> >>> > ----- Original Message -----
> >>> > > From: "Jeff Hammond" <jhammond at alcf.anl.gov>
> >>> > > To: devel at mpich.org
> >>> > > Sent: Wednesday, July 31, 2013 4:00:59 PM
> >>> > > Subject: Re: [mpich-devel] hwloc build failing on Mac with
> >>> > > GCC
> >>> > > 
> >>> > > Yes, that's right. Sorry. It's attached.
> >>> > > 
> >>> > > Jeff
> >>> > > 
> >>> > > ----- Original Message -----
> >>> > > > From: "Ken Raffenetti" <raffenet at mcs.anl.gov>
> >>> > > > To: devel at mpich.org
> >>> > > > Sent: Wednesday, July 31, 2013 3:51:01 PM
> >>> > > > Subject: Re: [mpich-devel] hwloc build failing on Mac with
> >>> > > > GCC
> >>> > > > 
> >>> > > > Maybe I'm missing something, but I fail to find a problem
> >>> > > > in the
> >>> > > > attachment. Did you mean to attach a make log?
> >>> > > > 
> >>> > > > ----- Original Message -----
> >>> > > > > From: "Jeff Hammond" <jhammond at alcf.anl.gov>
> >>> > > > > To: "MPICH" <devel at mpich.org>
> >>> > > > > Sent: Wednesday, July 31, 2013 2:43:55 PM
> >>> > > > > Subject: [mpich-devel] hwloc build failing on Mac with
> >>> > > > > GCC
> >>> > > > > 
> >>> > > > > Am I stupid or is something broken? This is the git head
> >>> > > > > as of
> >>> > > > > a
> >>> > > > > few
> >>> > > > > minutes ago.
> >>> > > > > 
> >>> > > > > Note that the essence of the problem is in the
> >>> > > > > attachment. I
> >>> > > > > will
> >>> > > > > not
> >>> > > > > repeat it here.
> >>> > > > > 
> >>> > > > > Thanks,
> >>> > > > > 
> >>> > > > > Jeff
> >>> > > > > 
> >>> > > > > Jeffs-MacBook-Pro:build-gcc jhammond$ gcc -v
> >>> > > > > Using built-in specs.
> >>> > > > > COLLECT_GCC=gcc
> >>> > > > > COLLECT_LTO_WRAPPER=/opt/local/libexec/gcc/x86_64-apple-darwin11/4.8.1/lto-wrapper
> >>> > > > > Target: x86_64-apple-darwin11
> >>> > > > > Configured with: ../gcc-4.8.1/configure
> >>> > > > > --prefix=/opt/local
> >>> > > > > --build=x86_64-apple-darwin11
> >>> > > > > --enable-languages=c,c++,objc,obj-c++,lto,fortran,java
> >>> > > > > --libdir=/opt/local/lib/gcc48
> >>> > > > > --includedir=/opt/local/include/gcc48
> >>> > > > > --infodir=/opt/local/share/info
> >>> > > > > --mandir=/opt/local/share/man
> >>> > > > > --datarootdir=/opt/local/share/gcc-4.8
> >>> > > > > --with-local-prefix=/opt/local
> >>> > > > > --with-system-zlib --disable-nls --program-suffix=-mp-4.8
> >>> > > > > --with-gxx-include-dir=/opt/local/include/gcc48/c++/
> >>> > > > > --with-gmp=/opt/local --with-mpfr=/opt/local
> >>> > > > > --with-mpc=/opt/local
> >>> > > > > --with-ppl=/opt/local --with-cloog=/opt/local
> >>> > > > > --enable-cloog-backend=isl --disable-cloog-version-check
> >>> > > > > --enable-stage1-checking --disable-multilib --enable-lto
> >>> > > > > --enable-libstdcxx-time --with-as=/opt/local/bin/as
> >>> > > > > --with-ld=/opt/local/bin/ld --with-ar=/opt/local/bin/ar
> >>> > > > > --with-bugurl=https://trac.macports.org/newticket
> >>> > > > > --with-pkgversion='MacPorts gcc48 4.8.1_1'
> >>> > > > > Thread model: posix
> >>> > > > > gcc version 4.8.1 (MacPorts gcc48 4.8.1_1)
> >>> > > > > Jeffs-MacBook-Pro:build-gcc jhammond$ g++ -v
> >>> > > > > Using built-in specs.
> >>> > > > > COLLECT_GCC=g++
> >>> > > > > COLLECT_LTO_WRAPPER=/opt/local/libexec/gcc/x86_64-apple-darwin11/4.8.1/lto-wrapper
> >>> > > > > Target: x86_64-apple-darwin11
> >>> > > > > Configured with: ../gcc-4.8.1/configure
> >>> > > > > --prefix=/opt/local
> >>> > > > > --build=x86_64-apple-darwin11
> >>> > > > > --enable-languages=c,c++,objc,obj-c++,lto,fortran,java
> >>> > > > > --libdir=/opt/local/lib/gcc48
> >>> > > > > --includedir=/opt/local/include/gcc48
> >>> > > > > --infodir=/opt/local/share/info
> >>> > > > > --mandir=/opt/local/share/man
> >>> > > > > --datarootdir=/opt/local/share/gcc-4.8
> >>> > > > > --with-local-prefix=/opt/local
> >>> > > > > --with-system-zlib --disable-nls --program-suffix=-mp-4.8
> >>> > > > > --with-gxx-include-dir=/opt/local/include/gcc48/c++/
> >>> > > > > --with-gmp=/opt/local --with-mpfr=/opt/local
> >>> > > > > --with-mpc=/opt/local
> >>> > > > > --with-ppl=/opt/local --with-cloog=/opt/local
> >>> > > > > --enable-cloog-backend=isl --disable-cloog-version-check
> >>> > > > > --enable-stage1-checking --disable-multilib --enable-lto
> >>> > > > > --enable-libstdcxx-time --with-as=/opt/local/bin/as
> >>> > > > > --with-ld=/opt/local/bin/ld --with-ar=/opt/local/bin/ar
> >>> > > > > --with-bugurl=https://trac.macports.org/newticket
> >>> > > > > --with-pkgversion='MacPorts gcc48 4.8.1_1'
> >>> > > > > Thread model: posix
> >>> > > > > gcc version 4.8.1 (MacPorts gcc48 4.8.1_1)
> >>> > > > > Jeffs-MacBook-Pro:build-gcc jhammond$ gfortran -v
> >>> > > > > Using built-in specs.
> >>> > > > > COLLECT_GCC=gfortran
> >>> > > > > COLLECT_LTO_WRAPPER=/opt/local/libexec/gcc/x86_64-apple-darwin11/4.8.1/lto-wrapper
> >>> > > > > Target: x86_64-apple-darwin11
> >>> > > > > Configured with: ../gcc-4.8.1/configure
> >>> > > > > --prefix=/opt/local
> >>> > > > > --build=x86_64-apple-darwin11
> >>> > > > > --enable-languages=c,c++,objc,obj-c++,lto,fortran,java
> >>> > > > > --libdir=/opt/local/lib/gcc48
> >>> > > > > --includedir=/opt/local/include/gcc48
> >>> > > > > --infodir=/opt/local/share/info
> >>> > > > > --mandir=/opt/local/share/man
> >>> > > > > --datarootdir=/opt/local/share/gcc-4.8
> >>> > > > > --with-local-prefix=/opt/local
> >>> > > > > --with-system-zlib --disable-nls --program-suffix=-mp-4.8
> >>> > > > > --with-gxx-include-dir=/opt/local/include/gcc48/c++/
> >>> > > > > --with-gmp=/opt/local --with-mpfr=/opt/local
> >>> > > > > --with-mpc=/opt/local
> >>> > > > > --with-ppl=/opt/local --with-cloog=/opt/local
> >>> > > > > --enable-cloog-backend=isl --disable-cloog-version-check
> >>> > > > > --enable-stage1-checking --disable-multilib --enable-lto
> >>> > > > > --enable-libstdcxx-time --with-as=/opt/local/bin/as
> >>> > > > > --with-ld=/opt/local/bin/ld --with-ar=/opt/local/bin/ar
> >>> > > > > --with-bugurl=https://trac.macports.org/newticket
> >>> > > > > --with-pkgversion='MacPorts gcc48 4.8.1_1'
> >>> > > > > Thread model: posix
> >>> > > > > gcc version 4.8.1 (MacPorts gcc48 4.8.1_1)
> >>> > > > > Jeffs-MacBook-Pro:build-gcc jhammond$ uname -a
> >>> > > > > Darwin Jeffs-MacBook-Pro.local 11.4.2 Darwin Kernel
> >>> > > > > Version
> >>> > > > > 11.4.2:
> >>> > > > > Thu Aug 23 16:25:48 PDT 2012;
> >>> > > > > root:xnu-1699.32.7~1/RELEASE_X86_64
> >>> > > > > x86_64
> >>> > > > > 
> >>> > > > > --
> >>> > > > > Jeff Hammond
> >>> > > > > Argonne Leadership Computing Facility
> >>> > > > > University of Chicago Computation Institute
> >>> > > > > jhammond at alcf.anl.gov / (630) 252-5381
> >>> > > > > http://www.linkedin.com/in/jeffhammond
> >>> > > > > https://wiki.alcf.anl.gov/parts/index.php/User:Jhammond
> >>> > > > > ALCF docs: http://www.alcf.anl.gov/user-guides
> >>> > > > > 
> >>> > > > 
> >>> > > 
> >>> > > --
> >>> > > Jeff Hammond
> >>> > > Argonne Leadership Computing Facility
> >>> > > University of Chicago Computation Institute
> >>> > > jhammond at alcf.anl.gov / (630) 252-5381
> >>> > > http://www.linkedin.com/in/jeffhammond
> >>> > > https://wiki.alcf.anl.gov/parts/index.php/User:Jhammond
> >>> > > ALCF docs: http://www.alcf.anl.gov/user-guides
> >>> > > 
> >>> > > 
> >>> > 
> >>> 
> >>> --
> >>> Jeff Hammond
> >>> Argonne Leadership Computing Facility
> >>> University of Chicago Computation Institute
> >>> jhammond at alcf.anl.gov / (630) 252-5381
> >>> http://www.linkedin.com/in/jeffhammond
> >>> https://wiki.alcf.anl.gov/parts/index.php/User:Jhammond
> >>> ALCF docs: http://www.alcf.anl.gov/user-guides
> >> 
> >> 
> > 
> > 
> 
> 

-- 
Jeff Hammond
Argonne Leadership Computing Facility
University of Chicago Computation Institute
jhammond at alcf.anl.gov / (630) 252-5381
http://www.linkedin.com/in/jeffhammond
https://wiki.alcf.anl.gov/parts/index.php/User:Jhammond
ALCF docs: http://www.alcf.anl.gov/user-guides

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