[mpich-discuss] MPICH error on CentOS

[bharat gupta]

DO I need to add some command in mpd.hosts file


On Thu, Nov 7, 2013 at 9:22 AM, bharat gupta <bharat.85.monu at gmail.com>wrote:

> I don't know much about mpi , as I am using gromacs which was complied
> with mpi option. , But I read somewhere that
>
>  " If a file named .mpd.conf is available in the user's home directory,
> only the user can have read and write privileges. The file must minimally
> contain a line with secretword=*<secretword>*. If you want to run MPD as
> root, create the mpd.conf file in the /etc directory instead of .mpd.conf in
> the root's home directory to run mpd as root. Avoid starting the MPD ring
> under the root account." Here'e the link
> http://software.intel.com/sites/products/documentation/hpc/ics/impi/41/lin/Reference_Manual/Multipurpose_Daemon_Commands.htm
>
> And after using chmod 700 , I still get the same error, but when I create
> a file mpd.conf in /etc I get the and added the secretword=<secretword>
> line in the file and run the same command, I get this error:-
>
> root at localhost INGT]# mpirun -np 24 mdrun -v -deffnm mdrun
> mpdroot: perror msg: No such file or directory
> mpdroot: cannot connect to local mpd at: /tmp/mpd2.console_root
>     probable cause:  no mpd daemon on this machine
>     possible cause:  unix socket /tmp/mpd2.console_root has been removed
>
> mpiexec_localhost.localdomain (__init__ 1208): forked process failed;
> status=255
>
>
> On Thu, Nov 7, 2013 at 9:11 AM, Ricardo Román Brenes <
> roman.ricardo at gmail.com> wrote:
>
>> Try using chmod 700.  Can you run any other mpi example? Like cpi.c
>> On Nov 6, 2013 6:08 PM, "bharat gupta" <bharat.85.monu at gmail.com> wrote:
>>
>>> It have changed the file permission (rw) for root , ls -l mpd.hosts
>>> gives the output
>>> -rw-r--r--, 1 root root
>>>
>>>
>>> On Thu, Nov 7, 2013 at 9:02 AM, Ricardo Román Brenes <
>>> roman.ricardo at gmail.com> wrote:
>>>
>>>> With rwx permission just for root?
>>>> On Nov 6, 2013 6:00 PM, "bharat gupta" <bharat.85.monu at gmail.com>
>>>> wrote:
>>>>
>>>>> I have created the file mpd.hosts in /etc folder in the root , but
>>>>> still it shows the same error ... /usr/bin/mpdroot: open failed for
>>>>> root's mpd conf filempiexec_localhost.localdomain (__init__ 1208):
>>>>> forked process failed; status=255
>>>>>
>>>>>
>>>>> On Thu, Nov 7, 2013 at 8:45 AM, Ricardo Román Brenes <
>>>>> roman.ricardo at gmail.com> wrote:
>>>>>
>>>>>> You need to create a mpd.hosts in /etc if you want to run mpd as root
>>>>>> On Nov 6, 2013 5:41 PM, "bharat gupta" <bharat.85.monu at gmail.com>
>>>>>> wrote:
>>>>>>
>>>>>>> Hi,
>>>>>>>
>>>>>>> I am getting the following error while using the command -
>>>>>>>
>>>>>>> [root at localhost INGT]# mpirun -np 24 mdrun_mpi -v -deffnm npt
>>>>>>>
>>>>>>> Error -
>>>>>>>
>>>>>>> /usr/bin/mpdroot: open failed for root's mpd conf
>>>>>>> filempiexec_localhost.localdomain (__init__ 1208): forked process failed;
>>>>>>> status=255
>>>>>>>
>>>>>>> I complied gromacs using - ./configure --enable-shared --enable-mpi.
>>>>>>> I have installed the mpich package , this is what I get when I check for
>>>>>>> mpirun and mpiexec -
>>>>>>>
>>>>>>> [root at localhost /]# which mpirun
>>>>>>> /usr/bin/mpirun
>>>>>>> [root at localhost /]# which mpiexec
>>>>>>> /usr/bin/mpiexec
>>>>>>>
>>>>>>> What could be the problem here ??
>>>>>>>
>>>>>>> Thanks
>>>>>>> --------
>>>>>>> Bharat
>>>>>>>
>>>>>>>
>>>>>>>
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>>>>>>
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>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Bharat
>>>>> Ph.D. Candidate
>>>>> Biomolecular Engineering Laboratory
>>>>> Pusan National University
>>>>> South Korea
>>>>> Mobile no. - 010-5818-3680
>>>>>
>>>>>
>>>>> _______________________________________________
>>>>> discuss mailing list     discuss at mpich.org
>>>>> To manage subscription options or unsubscribe:
>>>>> https://lists.mpich.org/mailman/listinfo/discuss
>>>>>
>>>>
>>>> _______________________________________________
>>>> discuss mailing list     discuss at mpich.org
>>>> To manage subscription options or unsubscribe:
>>>> https://lists.mpich.org/mailman/listinfo/discuss
>>>>
>>>
>>>
>>>
>>> --
>>> Bharat
>>> Ph.D. Candidate
>>> Biomolecular Engineering Laboratory
>>> Pusan National University
>>> South Korea
>>> Mobile no. - 010-5818-3680
>>>
>>>
>>> _______________________________________________
>>> discuss mailing list     discuss at mpich.org
>>> To manage subscription options or unsubscribe:
>>> https://lists.mpich.org/mailman/listinfo/discuss
>>>
>>
>> _______________________________________________
>> discuss mailing list     discuss at mpich.org
>> To manage subscription options or unsubscribe:
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>>
>
>
>
> --
> Bharat
> Ph.D. Candidate
> Biomolecular Engineering Laboratory
> Pusan National University
> South Korea
> Mobile no. - 010-5818-3680
>
>


-- 
Bharat
Ph.D. Candidate
Biomolecular Engineering Laboratory
Pusan National University
South Korea
Mobile no. - 010-5818-3680
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