[mpich-discuss] MPICH-3.0.4 on Ubuntu
Ярослав Иванов
ivanov.jaroslaw at gmail.com
Sun Jan 5 11:13:05 CST 2014
Hello!
I want to install MPICH-3.0.4 on my virtual ubuntu machine, but I got some
errors.
Install Guide: step 6
http://www.mpich.org/static/downloads/3.0.4/mpich-3.0.4-installguide.pdf
When I try:
"make |& tee m.txt"
It return error in param_vals.c no such file
So, I remake it with option VERBOSE=1. There are c and m txt files.
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Configuring MPICH version 3.0.4 with '-prefix=/home/jaroslaw/mpich-install' '--disable-f77' '--disable-fc'
Running on system: Linux jaroslaw-virtual-machine 3.2.0-58-generic-pae #88-Ubuntu SMP Tue Dec 3 18:00:02 UTC 2013 i686 i686 i386 GNU/Linux
checking for icc... no
checking for pgcc... no
checking for xlc... no
checking for xlC... no
checking for pathcc... no
checking for cc... cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking whether cc understands -c and -o together... yes
checking how to run the C preprocessor... cc -E
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking whether make supports nested variables... yes
checking dependency style of cc... gcc3
checking whether to enable maintainer-specific portions of Makefiles... yes
checking for ar... ar
checking the archiver (ar) interface... ar
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by cc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop
checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from cc object... ok
checking for sysroot... no
checking for mt... mt
checking if mt is a manifest tool... no
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if cc supports -fno-rtti -fno-exceptions... no
checking for cc option to produce PIC... -fPIC -DPIC
checking if cc PIC flag -fPIC -DPIC works... yes
checking if cc static flag -static works... yes
checking if cc supports -c -o file.o... yes
checking if cc supports -c -o file.o... (cached) yes
checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking whether make supports nested variables... (cached) yes
checking for icpc... no
checking for pgCC... no
checking for xlC... no
checking for pathCC... no
checking for c++... c++
checking whether we are using the GNU C++ compiler... yes
checking whether c++ accepts -g... yes
checking dependency style of c++... gcc3
checking how to run the C++ preprocessor... c++ -E
checking for ld used by c++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes
checking for c++ option to produce PIC... -fPIC -DPIC
checking if c++ PIC flag -fPIC -DPIC works... yes
checking if c++ static flag -static works... yes
checking if c++ supports -c -o file.o... yes
checking if c++ supports -c -o file.o... (cached) yes
checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether we are using the GNU Fortran 77 compiler... no
checking whether no accepts -g... no
checking whether we are using the GNU Fortran compiler... no
checking whether no accepts -g... no
configure: RUNNING PREREQ FOR ch3:nemesis
checking for getpagesize... yes
configure: ===== configuring src/mpl =====
configure: running /bin/bash /home/jaroslaw/libraries/mpich-3.0.4/src/mpl/configure --disable-option-checking '--prefix=/home/jaroslaw/mpich-install' '--disable-f77' '--disable-fc' --cache-file=/dev/null --srcdir=/home/jaroslaw/libraries/mpich-3.0.4/src/mpl
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking dependency style of cc... gcc3
checking the archiver (ar) interface... ar
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by cc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop
checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from cc object... ok
checking for sysroot... no
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... cc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if cc supports -fno-rtti -fno-exceptions... no
checking for cc option to produce PIC... -fPIC -DPIC
checking if cc PIC flag -fPIC -DPIC works... yes
checking if cc static flag -static works... yes
checking if cc supports -c -o file.o... yes
checking if cc supports -c -o file.o... (cached) yes
checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking whether make supports nested variables... yes
checking for an ANSI C-conforming const... yes
checking for C/C++ restrict keyword... __restrict
checking for variable argument list macro functionality... yes
checking for gcov... gcov
checking whether the compiler supports __typeof(variable)... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking ctype.h usability... yes
checking ctype.h presence... yes
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checking search.h usability... yes
checking search.h presence... yes
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checking for stdint.h... (cached) yes
checking valgrind.h usability... no
checking valgrind.h presence... no
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checking memcheck.h usability... no
checking memcheck.h presence... no
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checking for putenv... yes
checking whether putenv needs a declaration... no
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating localdefs
config.status: creating include/config.h
config.status: include/config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing include/mplconfig.h commands
config.status: creating include/mplconfig.h - prefix MPL for include/config.h defines
config.status: include/mplconfig.h is unchanged
configure: ===== done with src/mpl configure =====
configure: sourcing src/mpl/localdefs
configure: ===== configuring src/openpa =====
configure: running /bin/bash /home/jaroslaw/libraries/mpich-3.0.4/src/openpa/configure --disable-option-checking '--prefix=/home/jaroslaw/mpich-install' --with-atomic-primitives=auto_allow_emulation '--disable-f77' '--disable-fc' --cache-file=/dev/null --srcdir=/home/jaroslaw/libraries/mpich-3.0.4/src/openpa
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking for gcc... cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking dependency style of cc... gcc3
checking the archiver (ar) interface... ar
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by cc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop
checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from cc object... ok
checking for sysroot... no
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... cc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if cc supports -fno-rtti -fno-exceptions... no
checking for cc option to produce PIC... -fPIC -DPIC
checking if cc PIC flag -fPIC -DPIC works... yes
checking if cc static flag -static works... yes
checking if cc supports -c -o file.o... yes
checking if cc supports -c -o file.o... (cached) yes
checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking whether make supports nested variables... yes
checking for gcc... (cached) cc
checking whether we are using the GNU C compiler... (cached) yes
checking whether cc accepts -g... (cached) yes
checking for cc option to accept ISO C89... (cached) none needed
checking dependency style of cc... (cached) gcc3
checking whether to enable assertions... yes
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking atomic.h usability... no
checking atomic.h presence... no
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checking intrin.h usability... no
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checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for C/C++ restrict keyword... __restrict
checking for inline... inline
checking for an ANSI C-conforming const... yes
checking for pthread_create in -lpthread... yes
checking for pthread_yield... yes
checking if 100 threads can be run at once... yes
checking size of void *... 4
checking size of int... 4
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking if compiler rejects bogus asm statements... yes
checking for support for gcc x86/x86_64 primitives... yes
checking for support for gcc x86 primitives for pre-Pentium 4... yes
checking for support for gcc ia64 primitives... no
checking for support for gcc PowerPC atomics... no
checking for support for gcc ARM atomics... no
checking for support for gcc SiCortex atomics... no
checking for support for gcc atomic intrinsics... yes
checking for support for Windows NT atomic intrinsics... no
checking for support for Sun atomic operations library... no
checking whether to enable strict fairness checks... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating openpa.pc
config.status: creating src/config.h
config.status: src/config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing src/opa_config.h commands
config.status: creating src/opa_config.h - prefix OPA for src/config.h defines
config.status: src/opa_config.h is unchanged
configure: ===== done with src/openpa configure =====
sourcing /home/jaroslaw/libraries/mpich-3.0.4/src/pm/hydra/mpichprereq
checking whether the compiler defines __func__... yes
checking whether the compiler defines __FUNC__... no
checking whether the compiler sets __FUNCTION__... yes
checking whether C compiler accepts option -O2... yes
checking whether C compiler option -O2 works with an invalid prototype program... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking for type of weak symbol alias support... pragma weak
checking whether __attribute__ ((weak)) allowed... yes
checking whether __attribute__ ((weak_import)) allowed... yes
checking whether __attribute__((weak,alias(...))) allowed... no
checking for multiple weak symbol support... yes
checking for shared library (esp. rpath) characteristics of CC... done (results in src/env/cc_shlib.conf)
checking whether the C++ compiler c++ can build an executable... yes
checking whether C++ compiler works with string... yes
checking whether the compiler supports exceptions... yes
checking whether the compiler recognizes bool as a built-in type... yes
checking whether the compiler implements namespaces... yes
checking whether <iostream> available... yes
checking whether the compiler implements the namespace std... yes
checking whether <math> available... no
checking for GNU g++ version... 4 . 6
checking for shared library (esp. rpath) characteristics of CXX... done (results in src/env/cxx_shlib.conf)
checking whether C++ compiler accepts option -O2... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking for perl... /usr/bin/perl
checking for ar... ar
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checking for killall... killall
checking whether install works... yes
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checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for bash... /bin/bash
checking whether /bin/bash supports arrays... yes
checking for doctext... false
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checking for working volatile... yes
checking for C/C++ restrict keyword... __restrict
checking for inline... inline
checking whether __attribute__ allowed... yes
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checking whether byte ordering is bigendian... no
checking whether C compiler allows unaligned doubles... yes
checking whether cc supports __func__... yes
checking whether long double is supported... yes
checking whether long long is supported... yes
checking for max C struct integer alignment... four
checking for max C struct floating point alignment... four
checking for max C struct alignment of structs with doubles... four
checking for max C struct floating point alignment with long doubles... four
checking if alignment of structs with doubles is based on position... no
checking if alignment of structs with long long ints is based on position... no
checking if double alignment breaks rules, find actual alignment... no
checking for alignment restrictions on pointers... int or better
checking size of char... 1
checking size of unsigned char... 1
checking size of short... 2
checking size of unsigned short... 2
checking size of int... 4
checking size of unsigned int... 4
checking size of long... 4
checking size of unsigned long... 4
checking size of long long... 8
checking size of unsigned long long... 8
checking size of float... 4
checking size of double... 8
checking size of long double... 12
checking size of void *... 4
checking for ANSI C header files... (cached) yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking size of wchar_t... 4
checking size of float_int... 8
checking size of double_int... 12
checking size of long_int... 8
checking size of short_int... 8
checking size of two_int... 8
checking size of long_double_int... 16
checking sys/bitypes.h usability... yes
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checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for int8_t... yes
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checking for int32_t... yes
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checking stdbool.h usability... yes
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checking complex.h usability... yes
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checking size of _Bool... 1
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checking size of double _Complex... 16
checking size of long double _Complex... 24
checking for _Bool... yes
checking for float _Complex... yes
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checking size of bool... 1
checking complex usability... yes
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checking for complex... yes
checking size of Complex... 8
checking size of DoubleComplex... 16
checking size of LongDoubleComplex... 24
checking for alignment restrictions on int64_t... no
checking for alignment restrictions on int32_t... no
checking size of MPIR_Bsend_data_t... 56
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checking for gcc __asm__ and AMD x86_64 cmpxchgq instruction... no
checking for gcc __asm__ and IA64 xchg4 instruction... no
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checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE_NP... yes
checking whether pthread.h defines PTHREAD_MUTEX_RECURSIVE... yes
checking whether pthread.h defines PTHREAD_MUTEX_ERRORCHECK_NP... yes
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configure: RUNNING CONFIGURE FOR CH3 DEVICE
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configure: RUNNING CONFIGURE FOR ch3:nemesis
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configure: Using a memory-mapped file for shared memory
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configure: ===== configuring src/mpi/romio =====
configure: running /bin/bash /home/jaroslaw/libraries/mpich-3.0.4/src/mpi/romio/configure --disable-option-checking '--prefix=/home/jaroslaw/mpich-install' '--disable-f77' '--disable-fc' --cache-file=/dev/null --srcdir=/home/jaroslaw/libraries/mpich-3.0.4/src/mpi/romio
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Configuring with args dummy mt
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ROMIO home directory is /home/jaroslaw/libraries/mpich-3.0.4/src/mpi/romio
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Overriding Array test for MPICH
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configure: WARNING: File locks may not work with NFS. See the Installation and
users manual for instructions on testing and if necessary fixing this
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setting SYSDEP_INC to
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setting CC to cc
setting F77 to :
setting TEST_CC to $(bindir)/mpicc
setting TEST_F77 to $(bindir)/mpif77
setting CFLAGS to -O2 -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64
setting USER_CFLAGS to
setting USER_FFLAGS to
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating localdefs
config.status: creating mpi2-other/info/Makefile
config.status: creating mpi2-other/array/Makefile
config.status: creating test/Makefile
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config.status: creating test/large_file.c
config.status: creating test/runtests
config.status: creating test-internal/Makefile
config.status: creating util/romioinstall
config.status: creating include/mpio.h
config.status: creating include/mpiof.h
config.status: creating mpi2-other/info/fortran/Makefile
config.status: creating mpi2-other/array/fortran/Makefile
config.status: creating test/fmisc.f
config.status: creating test/fcoll_test.f
config.status: creating test/pfcoll_test.f
config.status: creating test/fperf.f
config.status: creating adio/include/romioconf.h
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing default-1 commands
configure: ===== done with src/mpi/romio configure =====
configure: sourcing src/mpi/romio/localdefs
configure: ===== configuring src/pm/hydra =====
configure: running /bin/bash /home/jaroslaw/libraries/mpich-3.0.4/src/pm/hydra/configure --disable-option-checking '--prefix=/home/jaroslaw/mpich-install' '--disable-f77' '--disable-fc' --cache-file=/dev/null --srcdir=/home/jaroslaw/libraries/mpich-3.0.4/src/pm/hydra
checking build system type... i686-pc-linux-gnu
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###
### Configuring hwloc core
###
checking hwloc building mode... embedded
configure: hwloc builddir: /tmp/jaroslaw/mpich-3.0.4/src/pm/hydra/tools/topo/hwloc/hwloc
configure: hwloc srcdir: /home/jaroslaw/libraries/mpich-3.0.4/src/pm/hydra/tools/topo/hwloc/hwloc
configure: Detected VPATH build
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checking for hwloc symbol prefix... hwloc_
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configure: WARNING: "-fvisibility=hidden" has been added to the hwloc CFLAGS
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checking components to build as plugins...
checking available processor topology libraries... hwloc
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checking warnings... no
checking profiling... yes
checking libftb.h usability... no
checking libftb.h presence... no
checking for libftb.h... no
checking for FTB_Connect in -lftb... no
checking for strsignal... (cached) yes
checking whether strsignal needs a declaration... no
checking for sigaction... (cached) yes
checking for signal... (cached) yes
checking for sigset... yes
checking for struct sigaction and sa_handler... yes
checking for gethostname... yes
checking whether gethostname needs a declaration... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating tools/topo/hwloc/hwloc/Makefile
config.status: creating tools/topo/hwloc/hwloc/include/Makefile
config.status: creating tools/topo/hwloc/hwloc/src/Makefile
config.status: creating Makefile
config.status: creating tools/bootstrap/src/bsci_init.c
config.status: creating hydra-doxygen.cfg
config.status: creating include/hydra_config.h
config.status: creating tools/topo/hwloc/hwloc/include/private/autogen/config.h
config.status: creating tools/topo/hwloc/hwloc/include/hwloc/autogen/config.h
config.status: executing depfiles commands
config.status: executing libtool commands
configure: ===== done with src/pm/hydra configure =====
checking size of OPA_ptr_t... 4
configure: WARNING: Could not define Fortran MPI datatypes for C
checking the sizeof MPI_Offset... 8
checking for size of MPI_Status... 32
configure: creating ./config.lt
config.lt: creating libtool
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating src/mpid/ch3/channels/nemesis/include/mpid_nem_net_module_defs.h
config.status: creating src/mpid/ch3/channels/nemesis/src/mpid_nem_net_array.c
config.status: creating Makefile
config.status: creating examples/Makefile
config.status: creating test/Makefile
config.status: creating test/commands/Makefile
config.status: creating src/include/mpichinfo.h
config.status: creating mpich-doxygen
config.status: creating src/include/glue_romio.h
config.status: creating src/include/mpichtimer.h
config.status: creating src/binding/cxx/mpicxx.h
config.status: creating src/binding/f77/mpif.h
config.status: creating src/binding/f77/setbotf.f
config.status: creating src/binding/f77/setbot.c
config.status: creating src/binding/f90/mpi_sizeofs.f90
config.status: creating src/binding/f90/mpi_base.f90
config.status: creating src/packaging/pkgconfig/mpich.pc
config.status: creating src/packaging/envmods/mpich.module
config.status: WARNING: '/home/jaroslaw/libraries/mpich-3.0.4/src/packaging/envmods/mpich.module.in' seems to ignore the --datarootdir setting
config.status: creating src/env/mpixxx_opts.conf
config.status: creating src/env/mpicc.sh
config.status: creating src/env/mpicc.conf
config.status: creating src/env/mpicc.bash
config.status: creating src/env/mpicxx.sh
config.status: creating src/env/mpicxx.conf
config.status: creating src/env/mpicxx.bash
config.status: creating src/env/mpif77.sh
config.status: creating src/env/mpif77.conf
config.status: creating src/env/mpif77.bash
config.status: creating src/env/mpif90.sh
config.status: creating src/env/mpif90.conf
config.status: creating src/env/mpif90.bash
config.status: creating src/env/parkill
config.status: creating src/util/dbg/getfuncstack
config.status: creating src/include/mpi.h
config.status: creating doc/design/Makefile
config.status: creating doc/installguide/Makefile
config.status: creating doc/logging/Makefile
config.status: creating doc/refman/Makefile
config.status: creating doc/smpd/Makefile
config.status: creating doc/userguide/Makefile
config.status: creating doc/windev/Makefile
config.status: creating test/commands/cmdtests
config.status: creating src/include/mpichconf.h
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing default-1 commands
config.status: executing default-2 commands
config.status: executing default-3 commands
config.status: executing default-4 commands
config.status: executing default-5 commands
=== configuring in test/mpi (/tmp/jaroslaw/mpich-3.0.4/test/mpi)
configure: running /bin/bash /home/jaroslaw/libraries/mpich-3.0.4/test/mpi/configure --disable-option-checking '--prefix=/home/jaroslaw/mpich-install' '--disable-f77' '--disable-fc' --cache-file=/dev/null --srcdir=/home/jaroslaw/libraries/mpich-3.0.4/test/mpi
RUNNING CONFIGURE FOR MPI TESTS
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... yes
checking whether make supports nested variables... (cached) yes
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for style of include used by make... GNU
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking dependency style of cc... gcc3
checking whether long double is supported... yes
checking whether long long is supported... yes
checking for an ANSI C-conforming const... yes
checking for C/C++ restrict keyword... __restrict
checking for ranlib... ranlib
checking the archiver (ar) interface... ar
checking for grep that handles long lines and -e... /bin/grep
checking for fgrep... /bin/grep -F
checking how to run the C preprocessor... cc -E
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking sys/resource.h usability... yes
checking sys/resource.h presence... yes
checking for sys/resource.h... yes
checking for int8_t... yes
checking for int16_t... yes
checking for int32_t... yes
checking for int64_t... yes
checking for uint8_t... yes
checking for uint16_t... yes
checking for uint32_t... yes
checking for uint64_t... yes
checking for _Bool... yes
checking for float _Complex... yes
checking for double _Complex... yes
checking for long double _Complex... yes
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for library containing pthread_create... -lpthread
checking for library containing pthread_barrier_init... none required
checking for pthread_create... yes
checking for pthread_yield... yes
checking for pthread_barrier_init... yes
checking for pthread_barrier_wait... yes
checking whether struct hostent contains h_addr_list... yes
checking for getrusage... yes
checking whether we are using the GNU Fortran 77 compiler... no
checking whether no accepts -g... no
configure: WARNING: Selecting integer*8 as the Fortran type for MPI_Offset
configure: WARNING: Selecting integer as the Fortran type for MPI_Aint
checking whether we are using the GNU Fortran compiler... no
checking whether no accepts -g... no
checking whether we are using the GNU C++ compiler... yes
checking whether c++ accepts -g... yes
checking dependency style of c++... gcc3
checking whether <iostream> available... yes
checking whether the compiler implements namespaces... yes
checking whether the compiler implements the namespace std... yes
checking whether MPI_2DOUBLE_COMPLEX is available... no
checking whether MPI_2COMPLEX is available... no
checking size of void *... 4
checking size of int... 4
checking size of long... 4
checking size of long long... 8
checking size of short... 2
checking for C integer type of address size... int
checking for perl... /usr/bin/perl
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating maint/testmerge
config.status: creating runtests
config.status: creating checktests
config.status: creating Makefile
config.status: creating basic/Makefile
config.status: creating attr/Makefile
config.status: creating util/Makefile
config.status: creating coll/Makefile
config.status: creating comm/Makefile
config.status: creating datatype/Makefile
config.status: creating errhan/Makefile
config.status: creating group/Makefile
config.status: creating info/Makefile
config.status: creating init/Makefile
config.status: creating pt2pt/Makefile
config.status: creating mpi_t/Makefile
config.status: creating rma/Makefile
config.status: creating spawn/Makefile
config.status: creating topo/Makefile
config.status: creating io/Makefile
config.status: creating f77/Makefile
config.status: creating f77/attr/Makefile
config.status: creating f77/attr/attraints.h
config.status: creating f77/pt2pt/attr1aints.h
config.status: creating f77/ext/add1size.h
config.status: creating f77/datatype/Makefile
config.status: creating f77/datatype/typeaints.h
config.status: creating f77/util/Makefile
config.status: creating f77/coll/Makefile
config.status: creating f77/comm/Makefile
config.status: creating f77/topo/Makefile
config.status: creating f77/init/Makefile
config.status: creating f77/rma/addsize.h
config.status: creating f77/pt2pt/Makefile
config.status: creating f77/info/Makefile
config.status: creating f77/spawn/Makefile
config.status: creating f77/spawn/testlist
config.status: creating f77/spawn/type1aint.h
config.status: creating f77/rma/Makefile
config.status: creating f77/ext/Makefile
config.status: creating f77/ext/testlist
config.status: creating f77/io/Makefile
config.status: creating f77/io/iooffset.h
config.status: creating f77/io/iodisp.h
config.status: creating f77/io/ioaint.h
config.status: creating f90/Makefile
config.status: creating f90/attr/Makefile
config.status: creating f90/datatype/Makefile
config.status: creating f90/f90types/Makefile
config.status: creating f90/util/Makefile
config.status: creating f90/coll/Makefile
config.status: creating f90/comm/Makefile
config.status: creating f90/topo/Makefile
config.status: creating f90/init/Makefile
config.status: creating f90/pt2pt/Makefile
config.status: creating f90/rma/Makefile
config.status: creating f90/info/Makefile
config.status: creating f90/spawn/Makefile
config.status: creating f90/spawn/testlist
config.status: creating f90/timer/Makefile
config.status: creating f90/ext/Makefile
config.status: creating f90/ext/testlist
config.status: creating f90/io/Makefile
config.status: creating f90/misc/Makefile
config.status: creating cxx/Makefile
config.status: creating cxx/util/Makefile
config.status: creating cxx/attr/Makefile
config.status: creating cxx/pt2pt/Makefile
config.status: creating cxx/comm/Makefile
config.status: creating cxx/coll/Makefile
config.status: creating cxx/errhan/Makefile
config.status: creating cxx/info/Makefile
config.status: creating cxx/datatype/Makefile
config.status: creating cxx/io/Makefile
config.status: creating cxx/init/Makefile
config.status: creating cxx/rma/Makefile
config.status: creating cxx/spawn/Makefile
config.status: creating threads/Makefile
config.status: creating threads/pt2pt/Makefile
config.status: creating threads/util/Makefile
config.status: creating threads/comm/Makefile
config.status: creating threads/init/Makefile
config.status: creating threads/spawn/Makefile
config.status: creating errors/Makefile
config.status: creating errors/attr/Makefile
config.status: creating errors/basic/Makefile
config.status: creating errors/coll/Makefile
config.status: creating errors/comm/Makefile
config.status: creating errors/datatype/Makefile
config.status: creating errors/faults/Makefile
config.status: creating errors/group/Makefile
config.status: creating errors/pt2pt/Makefile
config.status: creating errors/rma/Makefile
config.status: creating errors/spawn/Makefile
config.status: creating errors/topo/Makefile
config.status: creating errors/io/Makefile
config.status: creating errors/cxx/Makefile
config.status: creating errors/cxx/errhan/Makefile
config.status: creating errors/cxx/io/Makefile
config.status: creating errors/f77/Makefile
config.status: creating errors/f77/errhan/Makefile
config.status: creating errors/f77/errhan/addsize.h
config.status: creating errors/f77/errhan/iooffset.h
config.status: creating errors/f90/Makefile
config.status: creating errors/f90/errhan/Makefile
config.status: creating manual/Makefile
config.status: creating manual/manyconnect
config.status: creating manual/mpi_t/Makefile
config.status: creating perf/Makefile
config.status: creating testlist
config.status: creating cxx/testlist
config.status: creating f77/testlist
config.status: creating f90/testlist
config.status: creating threads/testlist
config.status: creating errors/testlist
config.status: creating errors/cxx/testlist
config.status: creating include/mpitestconf.h
config.status: executing depfiles commands
config.status: executing default-1 commands
config.status: executing default-2 commands
config.status: executing default-3 commands
Configuration completed.
-------------- next part --------------
make all-recursive
make[1]: Entering directory `/tmp/jaroslaw/mpich-3.0.4'
Making all in src/mpl
make[2]: Entering directory `/tmp/jaroslaw/mpich-3.0.4/src/mpl'
CC mplstr.lo
CC mpltrmem.lo
/home/jaroslaw/libraries/mpich-3.0.4/src/mpl/src/mpltrmem.c: In function 'MPL_trfree':
/home/jaroslaw/libraries/mpich-3.0.4/src/mpl/src/mpltrmem.c:347:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'size_t' [-Wformat]
/home/jaroslaw/libraries/mpich-3.0.4/src/mpl/src/mpltrmem.c:367:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'size_t' [-Wformat]
/home/jaroslaw/libraries/mpich-3.0.4/src/mpl/src/mpltrmem.c:409:9: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t' [-Wformat]
/home/jaroslaw/libraries/mpich-3.0.4/src/mpl/src/mpltrmem.c: In function 'MPL_trvalid2':
/home/jaroslaw/libraries/mpich-3.0.4/src/mpl/src/mpltrmem.c:525:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'size_t' [-Wformat]
/home/jaroslaw/libraries/mpich-3.0.4/src/mpl/src/mpltrmem.c: In function 'MPL_trdump':
/home/jaroslaw/libraries/mpich-3.0.4/src/mpl/src/mpltrmem.c:591:13: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t' [-Wformat]
CC mplenv.lo
CCLD libmpl.la
make[2]: Leaving directory `/tmp/jaroslaw/mpich-3.0.4/src/mpl'
Making all in src/openpa
make[2]: Entering directory `/tmp/jaroslaw/mpich-3.0.4/src/openpa'
Making all in src
make[3]: Entering directory `/tmp/jaroslaw/mpich-3.0.4/src/openpa/src'
make all-am
make[4]: Entering directory `/tmp/jaroslaw/mpich-3.0.4/src/openpa/src'
CC opa_primitives.lo
CC opa_queue.lo
CCLD libopa.la
make[4]: Leaving directory `/tmp/jaroslaw/mpich-3.0.4/src/openpa/src'
make[3]: Leaving directory `/tmp/jaroslaw/mpich-3.0.4/src/openpa/src'
Making all in test
make[3]: Entering directory `/tmp/jaroslaw/mpich-3.0.4/src/openpa/test'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/tmp/jaroslaw/mpich-3.0.4/src/openpa/test'
make[3]: Entering directory `/tmp/jaroslaw/mpich-3.0.4/src/openpa'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/tmp/jaroslaw/mpich-3.0.4/src/openpa'
make[2]: Leaving directory `/tmp/jaroslaw/mpich-3.0.4/src/openpa'
Making all in src/mpi/romio
make[2]: Entering directory `/tmp/jaroslaw/mpich-3.0.4/src/mpi/romio'
make[3]: Entering directory `/tmp/jaroslaw/mpich-3.0.4/src/mpi/romio'
(CDPATH="${ZSH_VERSION+.}:" && cd /home/jaroslaw/libraries/mpich-3.0.4/src/mpi/romio && /bin/bash /home/jaroslaw/libraries/mpich-3.0.4/src/mpi/romio/confdb/missing --run autoheader)
/home/jaroslaw/libraries/mpich-3.0.4/src/mpi/romio/confdb/missing: line 51: autoheader: command not found
WARNING: 'autoheader' is missing on your system. You should only need it if
you modified 'acconfig.h' or 'configure.ac'. You might want
to install the Autoconf and GNU m4 packages. Grab them
from any GNU archive site.
rm -f adio/include/stamp-h1
touch /home/jaroslaw/libraries/mpich-3.0.4/src/mpi/romio/adio/include/romioconf.h.in
cd . && /bin/bash ./config.status adio/include/romioconf.h
config.status: creating adio/include/romioconf.h
config.status: adio/include/romioconf.h is unchanged
CC mpi-io/close.lo
CC mpi-io/delete.lo
CC mpi-io/file_c2f.lo
CC mpi-io/file_f2c.lo
CC mpi-io/fsync.lo
CC mpi-io/get_amode.lo
CC mpi-io/get_atom.lo
CC mpi-io/get_bytoff.lo
CC mpi-io/get_extent.lo
CC mpi-io/get_group.lo
CC mpi-io/get_info.lo
CC mpi-io/get_posn.lo
CC mpi-io/get_posn_sh.lo
CC mpi-io/get_size.lo
CC mpi-io/get_view.lo
CC mpi-io/iread.lo
CC mpi-io/iread_at.lo
CC mpi-io/iread_sh.lo
CC mpi-io/iwrite.lo
CC mpi-io/iwrite_at.lo
CC mpi-io/iwrite_sh.lo
CC mpi-io/open.lo
CC mpi-io/prealloc.lo
CC mpi-io/rd_atallb.lo
CC mpi-io/rd_atalle.lo
CC mpi-io/read.lo
CC mpi-io/read_all.lo
CC mpi-io/read_allb.lo
CC mpi-io/read_alle.lo
CC mpi-io/read_at.lo
CC mpi-io/read_atall.lo
CC mpi-io/read_ord.lo
CC mpi-io/read_ordb.lo
CC mpi-io/read_orde.lo
CC mpi-io/read_sh.lo
CC mpi-io/register_datarep.lo
CC mpi-io/seek.lo
CC mpi-io/seek_sh.lo
CC mpi-io/set_atom.lo
CC mpi-io/set_info.lo
CC mpi-io/set_size.lo
CC mpi-io/set_view.lo
CC mpi-io/wr_atallb.lo
CC mpi-io/wr_atalle.lo
CC mpi-io/write.lo
CC mpi-io/write_all.lo
CC mpi-io/write_allb.lo
CC mpi-io/write_alle.lo
CC mpi-io/write_at.lo
CC mpi-io/write_atall.lo
CC mpi-io/write_ord.lo
CC mpi-io/write_ordb.lo
CC mpi-io/write_orde.lo
CC mpi-io/write_sh.lo
CC mpi-io/glue/mpich/mpio_file.lo
CC mpi-io/glue/mpich/mpio_err.lo
CC mpi-io/mpich_fileutil.lo
CC mpi-io/mpir-mpioinit.lo
CC mpi-io/mpiu_greq.lo
CC mpi-io/mpiu_external32.lo
CC adio/ad_nfs/ad_nfs_read.lo
CC adio/ad_nfs/ad_nfs_open.lo
CC adio/ad_nfs/ad_nfs_write.lo
CC adio/ad_nfs/ad_nfs_done.lo
CC adio/ad_nfs/ad_nfs_fcntl.lo
CC adio/ad_nfs/ad_nfs_iread.lo
CC adio/ad_nfs/ad_nfs_iwrite.lo
CC adio/ad_nfs/ad_nfs_wait.lo
CC adio/ad_nfs/ad_nfs_setsh.lo
CC adio/ad_nfs/ad_nfs_getsh.lo
CC adio/ad_nfs/ad_nfs.lo
CC adio/ad_nfs/ad_nfs_resize.lo
CC adio/ad_nfs/ad_nfs_features.lo
CC adio/ad_testfs/ad_testfs_close.lo
CC adio/ad_testfs/ad_testfs_read.lo
CC adio/ad_testfs/ad_testfs_rdcoll.lo
CC adio/ad_testfs/ad_testfs_wrcoll.lo
CC adio/ad_testfs/ad_testfs_open.lo
CC adio/ad_testfs/ad_testfs_write.lo
CC adio/ad_testfs/ad_testfs_done.lo
CC adio/ad_testfs/ad_testfs_fcntl.lo
CC adio/ad_testfs/ad_testfs_iread.lo
CC adio/ad_testfs/ad_testfs_iwrite.lo
CC adio/ad_testfs/ad_testfs_wait.lo
CC adio/ad_testfs/ad_testfs_flush.lo
CC adio/ad_testfs/ad_testfs_seek.lo
CC adio/ad_testfs/ad_testfs_resize.lo
CC adio/ad_testfs/ad_testfs_hints.lo
CC adio/ad_testfs/ad_testfs_delete.lo
CC adio/ad_testfs/ad_testfs.lo
CC adio/ad_ufs/ad_ufs.lo
CC adio/ad_ufs/ad_ufs_open.lo
CC adio/common/ad_aggregate.lo
CC adio/common/ad_aggregate_new.lo
CC adio/common/ad_close.lo
CC adio/common/ad_coll_build_req_new.lo
CC adio/common/ad_coll_exch_new.lo
CC adio/common/ad_darray.lo
CC adio/common/ad_delete.lo
CC adio/common/ad_done.lo
CC adio/common/ad_done_fake.lo
CC adio/common/ad_end.lo
CC adio/common/ad_fcntl.lo
CC adio/common/ad_features.lo
CC adio/common/ad_flush.lo
CC adio/common/ad_fstype.lo
CC adio/common/ad_get_sh_fp.lo
CC adio/common/ad_hints.lo
CC adio/common/ad_init.lo
CC adio/common/ad_io_coll.lo
CC adio/common/ad_iopen.lo
CC adio/common/ad_iread.lo
CC adio/common/ad_iread_fake.lo
CC adio/common/ad_iwrite.lo
CC adio/common/ad_iwrite_fake.lo
CC adio/common/ad_open.lo
CC adio/common/ad_opencoll.lo
CC adio/common/ad_opencoll_failsafe.lo
CC adio/common/ad_opencoll_scalable.lo
CC adio/common/ad_prealloc.lo
CC adio/common/ad_read.lo
CC adio/common/ad_read_coll.lo
CC adio/common/ad_read_str.lo
CC adio/common/ad_read_str_naive.lo
CC adio/common/ad_resize.lo
CC adio/common/ad_seek.lo
CC adio/common/ad_set_sh_fp.lo
CC adio/common/ad_set_view.lo
CC adio/common/ad_subarray.lo
CC adio/common/ad_wait.lo
CC adio/common/ad_wait_fake.lo
CC adio/common/ad_write.lo
CC adio/common/ad_write_coll.lo
CC adio/common/ad_write_nolock.lo
CC adio/common/ad_write_str.lo
CC adio/common/ad_write_str_naive.lo
CC adio/common/adi_close.lo
CC adio/common/byte_offset.lo
CC adio/common/cb_config_list.lo
CC adio/common/eof_offset.lo
CC adio/common/error.lo
CC adio/common/flatten.lo
CC adio/common/get_fp_posn.lo
CC adio/common/greq_fns.lo
CC adio/common/heap-sort.lo
CC adio/common/iscontig.lo
CC adio/common/lock.lo
CC adio/common/malloc.lo
CC adio/common/shfp_fname.lo
CC adio/common/status_setb.lo
CC adio/common/strfns.lo
CC adio/common/system_hints.lo
CCLD libromio.la
make[3]: Leaving directory `/tmp/jaroslaw/mpich-3.0.4/src/mpi/romio'
make[2]: Leaving directory `/tmp/jaroslaw/mpich-3.0.4/src/mpi/romio'
Making all in src/pm/hydra
make[2]: Entering directory `/tmp/jaroslaw/mpich-3.0.4/src/pm/hydra'
Making all in mpl
make[3]: Entering directory `/tmp/jaroslaw/mpich-3.0.4/src/pm/hydra/mpl'
CC mplstr.lo
CC mpltrmem.lo
/home/jaroslaw/libraries/mpich-3.0.4/src/pm/hydra/mpl/src/mpltrmem.c: In function 'MPL_trfree':
/home/jaroslaw/libraries/mpich-3.0.4/src/pm/hydra/mpl/src/mpltrmem.c:347:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'size_t' [-Wformat]
/home/jaroslaw/libraries/mpich-3.0.4/src/pm/hydra/mpl/src/mpltrmem.c:367:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'size_t' [-Wformat]
/home/jaroslaw/libraries/mpich-3.0.4/src/pm/hydra/mpl/src/mpltrmem.c:409:9: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t' [-Wformat]
/home/jaroslaw/libraries/mpich-3.0.4/src/pm/hydra/mpl/src/mpltrmem.c: In function 'MPL_trvalid2':
/home/jaroslaw/libraries/mpich-3.0.4/src/pm/hydra/mpl/src/mpltrmem.c:525:17: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'size_t' [-Wformat]
/home/jaroslaw/libraries/mpich-3.0.4/src/pm/hydra/mpl/src/mpltrmem.c: In function 'MPL_trdump':
/home/jaroslaw/libraries/mpich-3.0.4/src/pm/hydra/mpl/src/mpltrmem.c:591:13: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'size_t' [-Wformat]
CC mplenv.lo
CCLD libmpl.la
make[3]: Leaving directory `/tmp/jaroslaw/mpich-3.0.4/src/pm/hydra/mpl'
Making all in tools/topo/hwloc/hwloc
make[3]: Entering directory `/tmp/jaroslaw/mpich-3.0.4/src/pm/hydra/tools/topo/hwloc/hwloc'
Making all in src
make[4]: Entering directory `/tmp/jaroslaw/mpich-3.0.4/src/pm/hydra/tools/topo/hwloc/hwloc/src'
make[5]: Entering directory `/tmp/jaroslaw/mpich-3.0.4/src/pm/hydra/tools/topo/hwloc/hwloc/src'
CC topology.lo
CC traversal.lo
CC distances.lo
CC components.lo
CC bind.lo
CC bitmap.lo
CC misc.lo
CC base64.lo
CC topology-noos.lo
CC topology-synthetic.lo
CC topology-custom.lo
CC topology-xml.lo
CC topology-xml-nolibxml.lo
CC topology-linux.lo
CC topology-x86.lo
CCLD libhwloc_embedded.la
make[5]: Leaving directory `/tmp/jaroslaw/mpich-3.0.4/src/pm/hydra/tools/topo/hwloc/hwloc/src'
make[4]: Leaving directory `/tmp/jaroslaw/mpich-3.0.4/src/pm/hydra/tools/topo/hwloc/hwloc/src'
Making all in include
make[4]: Entering directory `/tmp/jaroslaw/mpich-3.0.4/src/pm/hydra/tools/topo/hwloc/hwloc/include'
make[4]: Nothing to be done for `all'.
make[4]: Leaving directory `/tmp/jaroslaw/mpich-3.0.4/src/pm/hydra/tools/topo/hwloc/hwloc/include'
make[4]: Entering directory `/tmp/jaroslaw/mpich-3.0.4/src/pm/hydra/tools/topo/hwloc/hwloc'
make[4]: Nothing to be done for `all-am'.
make[4]: Leaving directory `/tmp/jaroslaw/mpich-3.0.4/src/pm/hydra/tools/topo/hwloc/hwloc'
make[3]: Leaving directory `/tmp/jaroslaw/mpich-3.0.4/src/pm/hydra/tools/topo/hwloc/hwloc'
Making all in .
make[3]: Entering directory `/tmp/jaroslaw/mpich-3.0.4/src/pm/hydra'
(CDPATH="${ZSH_VERSION+.}:" && cd /home/jaroslaw/libraries/mpich-3.0.4/src/pm/hydra && /bin/bash /home/jaroslaw/libraries/mpich-3.0.4/src/pm/hydra/confdb/missing --run autoheader)
/home/jaroslaw/libraries/mpich-3.0.4/src/pm/hydra/confdb/missing: line 51: autoheader: command not found
WARNING: 'autoheader' is missing on your system. You should only need it if
you modified 'acconfig.h' or 'configure.ac'. You might want
to install the Autoconf and GNU m4 packages. Grab them
from any GNU archive site.
rm -f include/stamp-h1
touch /home/jaroslaw/libraries/mpich-3.0.4/src/pm/hydra/include/hydra_config.h.in
cd . && /bin/bash ./config.status include/hydra_config.h
config.status: creating include/hydra_config.h
config.status: include/hydra_config.h is unchanged
CC alloc.lo
CC args.lo
CC dbg.lo
CC env.lo
CC launch.lo
CC others.lo
CC signals.lo
CC sock.lo
CC string.lo
CC topo.lo
CC topo_hwloc.lo
CC bsci_init.lo
CC bsci_finalize.lo
CC bsci_launch.lo
CC bsci_query_node_list.lo
CC bsci_query_proxy_id.lo
CC bsci_query_native_int.lo
CC bsci_wait.lo
CC bsci_env.lo
CC bscu_wait.lo
CC bscu_cb.lo
CC external_common.lo
CC external_common_launch.lo
CC fork_init.lo
CC user_init.lo
CC manual_init.lo
CC rsh_init.lo
CC rsh_env.lo
CC ssh_init.lo
CC ssh.lo
CC ssh_env.lo
CC ssh_finalize.lo
CC slurm_init.lo
CC slurm_launch.lo
CC slurm_env.lo
CC slurm_query_native_int.lo
CC slurm_query_node_list.lo
CC slurm_query_proxy_id.lo
CC ll_init.lo
CC ll_launch.lo
CC ll_query_native_int.lo
CC ll_query_node_list.lo
CC ll_query_proxy_id.lo
CC ll_env.lo
CC lsf_init.lo
CC lsf_query_native_int.lo
CC lsf_query_node_list.lo
CC lsf_env.lo
CC sge_init.lo
CC sge_query_native_int.lo
CC sge_query_node_list.lo
CC sge_env.lo
CC pbs_init.lo
CC pbs_query_native_int.lo
CC pbs_query_node_list.lo
CC cobalt_init.lo
CC cobalt_query_native_int.lo
CC cobalt_query_node_list.lo
CC persist_init.lo
CC persist_launch.lo
CC persist_wait.lo
CC ckpoint.lo
CC demux.lo
CC demux_poll.lo
CC demux_select.lo
CC debugger.lo
CC hydt_ftb_dummy.lo
CC uiu.lo
CCLD libhydra.la
CC pmiserv_pmi.lo
CC pmiserv_pmi_v1.lo
CC pmiserv_pmi_v2.lo
CC pmiserv_pmci.lo
CC pmiserv_cb.lo
CC pmiserv_utils.lo
CC common.lo
CC pmi_v2_common.lo
CCLD libpm.la
CC hydra_persist-persist_server.o
CCLD hydra_persist
CC hydra_nameserver-hydra_nameserver.o
CCLD hydra_nameserver
CC hydra_pmi_proxy-pmip.o
CC hydra_pmi_proxy-pmip_cb.o
CC hydra_pmi_proxy-pmip_utils.o
CC hydra_pmi_proxy-pmip_pmi_v1.o
CC hydra_pmi_proxy-pmip_pmi_v2.o
CC hydra_pmi_proxy-common.o
CC hydra_pmi_proxy-pmi_v2_common.o
CCLD hydra_pmi_proxy
CC mpiexec.o
CC utils.o
CCLD mpiexec.hydra
make[3]: Leaving directory `/tmp/jaroslaw/mpich-3.0.4/src/pm/hydra'
make[2]: Leaving directory `/tmp/jaroslaw/mpich-3.0.4/src/pm/hydra'
Making all in .
make[2]: Entering directory `/tmp/jaroslaw/mpich-3.0.4'
(CDPATH="${ZSH_VERSION+.}:" && cd /home/jaroslaw/libraries/mpich-3.0.4 && /bin/bash /home/jaroslaw/libraries/mpich-3.0.4/confdb/missing --run autoheader)
/home/jaroslaw/libraries/mpich-3.0.4/confdb/missing: line 51: autoheader: command not found
WARNING: 'autoheader' is missing on your system. You should only need it if
you modified 'acconfig.h' or 'configure.ac'. You might want
to install the Autoconf and GNU m4 packages. Grab them
from any GNU archive site.
rm -f src/include/stamp-h1
touch /home/jaroslaw/libraries/mpich-3.0.4/src/include/mpichconf.h.in
cd . && /bin/bash ./config.status src/include/mpichconf.h
config.status: creating src/include/mpichconf.h
config.status: src/include/mpichconf.h is unchanged
CC src/mpi/attr/attrutil.lo
CC src/mpi/attr/dup_fn.lo
CC src/mpi/coll/allred_group.lo
CC src/mpi/coll/barrier_group.lo
CC src/mpi/coll/helper_fns.lo
CC src/mpi/coll/opsum.lo
CC src/mpi/coll/opmax.lo
CC src/mpi/coll/opmin.lo
CC src/mpi/coll/opband.lo
CC src/mpi/coll/opbor.lo
CC src/mpi/coll/opbxor.lo
CC src/mpi/coll/opland.lo
CC src/mpi/coll/oplor.lo
CC src/mpi/coll/oplxor.lo
CC src/mpi/coll/opprod.lo
CC src/mpi/coll/opminloc.lo
CC src/mpi/coll/opmaxloc.lo
CC src/mpi/coll/opno_op.lo
CC src/mpi/coll/opreplace.lo
CC src/mpi/coll/nbcutil.lo
CC src/mpi/comm/commutil.lo
CC src/mpi/datatype/typeutil.lo
CC src/mpi/errhan/errutil.lo
CC src/mpi/errhan/dynerrutil.lo
CC src/mpi/group/grouputil.lo
CC src/mpi/info/infoutil.lo
CC src/mpi/init/initinfo.lo
CC src/mpi/init/async.lo
CC src/mpi/pt2pt/bsendutil.lo
CC src/mpi/pt2pt/mpir_request.lo
CC src/mpi/rma/winutil.lo
CC src/mpi/rma/rmatypeutil.lo
CC src/mpi/timer/mpidtime.lo
CC src/mpi/topo/topoutil.lo
CC src/util/dbg/dbg_printf.lo
CC src/util/dbg/timelimit.lo
CC src/util/dbg/exit.lo
CC src/util/instrm/states.lo
CC src/util/instrm/instr.lo
CC src/util/mem/trmem.lo
CC src/util/mem/handlemem.lo
CC src/util/mem/safestr.lo
CC src/util/mem/argstr.lo
CC src/util/mem/strerror.lo
CC src/util/msgs/msgprint.lo
CC src/util/other/outliers.lo
CC src/util/other/assert.lo
CC src/util/param/param_vals.lo
CC src/util/procmap/local_proc.lo
CC src/util/thread/mpiu_thread.lo
CC src/glue/romio/glue_romio.lo
CC src/mpid/ch3/src/ch3u_buffer.lo
CC src/mpid/ch3/src/ch3u_comm.lo
CC src/mpid/ch3/src/ch3u_comm_spawn_multiple.lo
CC src/mpid/ch3/src/ch3u_handle_connection.lo
CC src/mpid/ch3/src/ch3u_handle_recv_pkt.lo
CC src/mpid/ch3/src/ch3u_handle_recv_req.lo
CC src/mpid/ch3/src/ch3u_handle_send_req.lo
CC src/mpid/ch3/src/ch3u_port.lo
CC src/mpid/ch3/src/ch3u_recvq.lo
CC src/mpid/ch3/src/ch3u_request.lo
CC src/mpid/ch3/src/ch3u_rma_acc_ops.lo
CC src/mpid/ch3/src/ch3u_rma_ops.lo
CC src/mpid/ch3/src/ch3u_rma_reqops.lo
CC src/mpid/ch3/src/ch3u_rma_sync.lo
CC src/mpid/ch3/src/ch3u_rndv.lo
CC src/mpid/ch3/src/ch3u_eager.lo
CC src/mpid/ch3/src/ch3u_eagersync.lo
CC src/mpid/ch3/src/ch3u_win_fns.lo
CC src/mpid/ch3/src/mpid_abort.lo
CC src/mpid/ch3/src/mpid_cancel_recv.lo
CC src/mpid/ch3/src/mpid_cancel_send.lo
CC src/mpid/ch3/src/mpid_comm_disconnect.lo
CC src/mpid/ch3/src/mpid_comm_group_failed.lo
CC src/mpid/ch3/src/mpid_comm_reenable_anysource.lo
CC src/mpid/ch3/src/mpid_comm_spawn_multiple.lo
CC src/mpid/ch3/src/mpid_finalize.lo
CC src/mpid/ch3/src/mpid_get_universe_size.lo
CC src/mpid/ch3/src/mpid_getpname.lo
CC src/mpid/ch3/src/mpid_improbe.lo
CC src/mpid/ch3/src/mpid_imrecv.lo
CC src/mpid/ch3/src/mpid_init.lo
CC src/mpid/ch3/src/mpid_iprobe.lo
CC src/mpid/ch3/src/mpid_irecv.lo
CC src/mpid/ch3/src/mpid_irsend.lo
CC src/mpid/ch3/src/mpid_isend.lo
CC src/mpid/ch3/src/mpid_issend.lo
CC src/mpid/ch3/src/mpid_mprobe.lo
CC src/mpid/ch3/src/mpid_mrecv.lo
CC src/mpid/ch3/src/mpid_port.lo
CC src/mpid/ch3/src/mpid_probe.lo
CC src/mpid/ch3/src/mpid_recv.lo
CC src/mpid/ch3/src/mpid_rsend.lo
CC src/mpid/ch3/src/mpid_send.lo
CC src/mpid/ch3/src/mpid_ssend.lo
CC src/mpid/ch3/src/mpid_startall.lo
CC src/mpid/ch3/src/mpid_vc.lo
CC src/mpid/ch3/src/mpid_rma.lo
CC src/mpid/ch3/src/mpidi_isend_self.lo
CC src/mpid/ch3/src/mpidi_pg.lo
CC src/mpid/ch3/src/mpidi_printf.lo
CC src/mpid/ch3/channels/nemesis/src/ch3_finalize.lo
CC src/mpid/ch3/channels/nemesis/src/ch3_init.lo
CC src/mpid/ch3/channels/nemesis/src/ch3_isend.lo
CC src/mpid/ch3/channels/nemesis/src/ch3_isendv.lo
CC src/mpid/ch3/channels/nemesis/src/ch3_istartmsg.lo
CC src/mpid/ch3/channels/nemesis/src/ch3_istartmsgv.lo
CC src/mpid/ch3/channels/nemesis/src/ch3_progress.lo
CC src/mpid/ch3/channels/nemesis/src/ch3_abort.lo
CC src/mpid/ch3/channels/nemesis/src/ch3_rma_shm.lo
CC src/mpid/ch3/channels/nemesis/src/ch3_win_fns.lo
CC src/mpid/ch3/channels/nemesis/src/ch3i_comm.lo
CC src/mpid/ch3/channels/nemesis/src/ch3i_eagernoncontig.lo
CC src/mpid/ch3/channels/nemesis/src/mpid_nem_alloc.lo
CC src/mpid/ch3/channels/nemesis/src/mpid_nem_init.lo
CC src/mpid/ch3/channels/nemesis/src/mpid_nem_barrier.lo
CC src/mpid/ch3/channels/nemesis/src/mpid_nem_mpich.lo
CC src/mpid/ch3/channels/nemesis/src/mpid_nem_ckpt.lo
CC src/mpid/ch3/channels/nemesis/src/mpid_nem_finalize.lo
CC src/mpid/ch3/channels/nemesis/src/mpid_nem_network_poll.lo
CC src/mpid/ch3/channels/nemesis/src/mpid_nem_network.lo
CC src/mpid/ch3/channels/nemesis/src/mpid_nem_debug.lo
CC src/mpid/ch3/channels/nemesis/src/mpid_nem_lmt.lo
CC src/mpid/ch3/channels/nemesis/src/mpid_nem_lmt_shm.lo
CC src/mpid/ch3/channels/nemesis/src/mpid_nem_net_array.lo
CC src/mpid/ch3/channels/nemesis/src/mpid_nem_lmt_dma.lo
CC src/mpid/ch3/channels/nemesis/src/mpid_nem_lmt_vmsplice.lo
CC src/mpid/ch3/channels/nemesis/netmod/tcp/tcp_finalize.lo
CC src/mpid/ch3/channels/nemesis/netmod/tcp/tcp_init.lo
CC src/mpid/ch3/channels/nemesis/netmod/tcp/tcp_send.lo
CC src/mpid/ch3/channels/nemesis/netmod/tcp/tcp_utility.lo
CC src/mpid/ch3/channels/nemesis/netmod/tcp/socksm.lo
CC src/mpid/ch3/channels/nemesis/netmod/tcp/tcp_getip.lo
CC src/mpid/ch3/channels/nemesis/netmod/tcp/tcp_ckpt.lo
CC src/mpid/ch3/channels/nemesis/netmod/none/none.lo
CC src/mpid/ch3/channels/nemesis/utils/monitor/papi_defs.lo
CC src/mpid/ch3/channels/nemesis/utils/replacements/mkstemp.lo
CC src/mpid/common/datatype/dataloop/darray_support.lo
CC src/mpid/common/datatype/dataloop/dataloop.lo
CC src/mpid/common/datatype/dataloop/dataloop_create.lo
CC src/mpid/common/datatype/dataloop/dataloop_create_blockindexed.lo
CC src/mpid/common/datatype/dataloop/dataloop_create_contig.lo
CC src/mpid/common/datatype/dataloop/dataloop_create_indexed.lo
CC src/mpid/common/datatype/dataloop/dataloop_create_pairtype.lo
CC src/mpid/common/datatype/dataloop/dataloop_create_struct.lo
CC src/mpid/common/datatype/dataloop/dataloop_create_vector.lo
CC src/mpid/common/datatype/dataloop/segment.lo
CC src/mpid/common/datatype/dataloop/segment_count.lo
CC src/mpid/common/datatype/dataloop/segment_flatten.lo
CC src/mpid/common/datatype/dataloop/segment_packunpack.lo
CC src/mpid/common/datatype/dataloop/subarray_support.lo
CC src/mpid/common/datatype/mpid_contents_support.lo
CC src/mpid/common/datatype/mpid_datatype_contents.lo
CC src/mpid/common/datatype/mpid_datatype_free.lo
CC src/mpid/common/datatype/mpid_ext32_datatype.lo
CC src/mpid/common/datatype/mpid_ext32_segment.lo
CC src/mpid/common/datatype/mpid_segment.lo
CC src/mpid/common/datatype/mpid_type_blockindexed.lo
CC src/mpid/common/datatype/mpid_type_commit.lo
CC src/mpid/common/datatype/mpid_type_contiguous.lo
CC src/mpid/common/datatype/mpid_type_create_pairtype.lo
CC src/mpid/common/datatype/mpid_type_create_resized.lo
CC src/mpid/common/datatype/mpid_type_debug.lo
CC src/mpid/common/datatype/mpid_type_dup.lo
CC src/mpid/common/datatype/mpid_type_get_contents.lo
CC src/mpid/common/datatype/mpid_type_get_envelope.lo
CC src/mpid/common/datatype/mpid_type_indexed.lo
CC src/mpid/common/datatype/mpid_type_struct.lo
CC src/mpid/common/datatype/mpid_type_vector.lo
CC src/mpid/common/datatype/mpid_type_zerolen.lo
CC src/mpid/common/datatype/mpir_type_flatten.lo
CC src/mpid/common/datatype/mpir_type_get_contig_blocks.lo
CC src/mpid/common/sched/mpid_sched.lo
CC src/mpid/common/thread/mpid_thread.lo
CC src/mpi_t/mpi_t_util.lo
CC src/nameserv/file/file_nameserv.lo
CC src/pmi/simple/simple_pmiutil.lo
CC src/pmi/simple/simple_pmi.lo
CC src/mpi/attr/attr_delete.lo
CC src/mpi/attr/attr_get.lo
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CC src/mpi/attr/comm_create_keyval.lo
CC src/mpi/attr/comm_delete_attr.lo
CC src/mpi/attr/comm_free_keyval.lo
CC src/mpi/attr/comm_get_attr.lo
CC src/mpi/attr/comm_set_attr.lo
CC src/mpi/attr/keyval_create.lo
CC src/mpi/attr/keyval_free.lo
CC src/mpi/attr/type_create_keyval.lo
CC src/mpi/attr/type_delete_attr.lo
CC src/mpi/attr/type_free_keyval.lo
CC src/mpi/attr/type_get_attr.lo
CC src/mpi/attr/type_set_attr.lo
CC src/mpi/attr/win_create_keyval.lo
CC src/mpi/attr/win_delete_attr.lo
CC src/mpi/attr/win_free_keyval.lo
CC src/mpi/attr/win_get_attr.lo
CC src/mpi/attr/win_set_attr.lo
CC src/mpi/coll/allreduce.lo
CC src/mpi/coll/barrier.lo
CC src/mpi/coll/op_create.lo
CC src/mpi/coll/op_free.lo
CC src/mpi/coll/bcast.lo
CC src/mpi/coll/alltoall.lo
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CC src/mpi/coll/reduce.lo
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CC src/mpi/coll/scan.lo
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CC src/mpi/coll/allgather.lo
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CC src/mpi/coll/red_scat.lo
CC src/mpi/coll/alltoallw.lo
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CC src/mpi/coll/op_commutative.lo
CC src/mpi/coll/red_scat_block.lo
CC src/mpi/coll/iallgather.lo
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CC src/mpi/coll/ialltoall.lo
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CC src/mpi/coll/ired_scat.lo
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CC src/mpi/comm/comm_create_group.lo
CC src/mpi/comm/comm_dup.lo
CC src/mpi/comm/comm_dup_with_info.lo
CC src/mpi/comm/comm_free.lo
CC src/mpi/comm/comm_get_name.lo
CC src/mpi/comm/comm_get_info.lo
CC src/mpi/comm/comm_set_info.lo
CC src/mpi/comm/comm_group.lo
CC src/mpi/comm/comm_idup.lo
CC src/mpi/comm/comm_rank.lo
CC src/mpi/comm/comm_size.lo
CC src/mpi/comm/comm_remote_group.lo
CC src/mpi/comm/comm_remote_size.lo
CC src/mpi/comm/comm_set_name.lo
CC src/mpi/comm/comm_split.lo
CC src/mpi/comm/comm_test_inter.lo
CC src/mpi/comm/intercomm_create.lo
CC src/mpi/comm/intercomm_merge.lo
CC src/mpi/comm/comm_split_type.lo
CC src/mpi/comm/comm_group_failed.lo
CC src/mpi/comm/comm_reenable_anysource.lo
CC src/mpi/comm/comm_remote_group_failed.lo
CC src/mpi/datatype/address.lo
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CC src/mpi/datatype/get_count.lo
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CC src/mpi/datatype/pack_size.lo
CC src/mpi/datatype/status_set_elements.lo
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CC src/mpi/datatype/type_get_name.lo
CC src/mpi/datatype/type_set_name.lo
CC src/mpi/datatype/type_size.lo
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CC src/mpi/datatype/type_commit.lo
CC src/mpi/datatype/type_indexed.lo
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CC src/mpi/datatype/type_struct.lo
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CC src/mpi/datatype/type_free.lo
CC src/mpi/datatype/type_hvector.lo
CC src/mpi/datatype/type_dup.lo
CC src/mpi/datatype/type_get_envelope.lo
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CC src/mpi/datatype/type_get_extent.lo
CC src/mpi/datatype/type_get_extent_x.lo
CC src/mpi/datatype/type_get_true_extent.lo
CC src/mpi/datatype/type_get_true_extent_x.lo
CC src/mpi/datatype/type_match_size.lo
CC src/mpi/datatype/type_create_struct.lo
CC src/mpi/datatype/type_create_hindexed.lo
CC src/mpi/datatype/type_create_hvector.lo
CC src/mpi/datatype/pack_external.lo
CC src/mpi/datatype/pack_external_size.lo
CC src/mpi/datatype/unpack_external.lo
CC src/mpi/datatype/type_create_indexed_block.lo
CC src/mpi/datatype/type_create_hindexed_block.lo
CC src/mpi/datatype/type_create_resized.lo
CC src/mpi/datatype/type_create_darray.lo
CC src/mpi/datatype/type_create_subarray.lo
CC src/mpi/errhan/add_error_code.lo
CC src/mpi/errhan/add_error_class.lo
CC src/mpi/errhan/add_error_string.lo
CC src/mpi/errhan/comm_call_errhandler.lo
CC src/mpi/errhan/comm_create_errhandler.lo
CC src/mpi/errhan/comm_get_errhandler.lo
CC src/mpi/errhan/comm_set_errhandler.lo
CC src/mpi/errhan/errhandler_create.lo
CC src/mpi/errhan/errhandler_free.lo
CC src/mpi/errhan/errhandler_get.lo
CC src/mpi/errhan/errhandler_set.lo
CC src/mpi/errhan/error_class.lo
CC src/mpi/errhan/error_string.lo
CC src/mpi/errhan/file_create_errhandler.lo
CC src/mpi/errhan/file_get_errhandler.lo
CC src/mpi/errhan/file_set_errhandler.lo
CC src/mpi/errhan/file_call_errhandler.lo
CC src/mpi/errhan/win_create_errhandler.lo
CC src/mpi/errhan/win_call_errhandler.lo
CC src/mpi/errhan/win_get_errhandler.lo
CC src/mpi/errhan/win_set_errhandler.lo
CC src/mpi/group/group_compare.lo
CC src/mpi/group/group_difference.lo
CC src/mpi/group/group_excl.lo
CC src/mpi/group/group_free.lo
CC src/mpi/group/group_incl.lo
CC src/mpi/group/group_intersection.lo
CC src/mpi/group/group_range_excl.lo
CC src/mpi/group/group_range_incl.lo
CC src/mpi/group/group_rank.lo
CC src/mpi/group/group_size.lo
CC src/mpi/group/group_translate_ranks.lo
CC src/mpi/group/group_union.lo
CC src/mpi/info/info_create.lo
CC src/mpi/info/info_delete.lo
CC src/mpi/info/info_dup.lo
CC src/mpi/info/info_free.lo
CC src/mpi/info/info_get.lo
CC src/mpi/info/info_getn.lo
CC src/mpi/info/info_getnth.lo
CC src/mpi/info/info_getvallen.lo
CC src/mpi/info/info_set.lo
CC src/mpi/init/abort.lo
CC src/mpi/init/init.lo
CC src/mpi/init/initialized.lo
CC src/mpi/init/initthread.lo
CC src/mpi/init/ismain.lo
CC src/mpi/init/finalize.lo
CC src/mpi/init/finalized.lo
CC src/mpi/init/querythread.lo
CC src/mpi/misc/getpname.lo
CC src/mpi/misc/pcontrol.lo
CC src/mpi/misc/version.lo
CC src/mpi/misc/library_version.lo
CC src/mpi/pt2pt/bsend.lo
CC src/mpi/pt2pt/bsend_init.lo
CC src/mpi/pt2pt/bufattach.lo
CC src/mpi/pt2pt/buffree.lo
CC src/mpi/pt2pt/cancel.lo
CC src/mpi/pt2pt/greq_start.lo
CC src/mpi/pt2pt/greq_complete.lo
CC src/mpi/pt2pt/ibsend.lo
CC src/mpi/pt2pt/improbe.lo
CC src/mpi/pt2pt/imrecv.lo
CC src/mpi/pt2pt/iprobe.lo
CC src/mpi/pt2pt/irecv.lo
CC src/mpi/pt2pt/irsend.lo
CC src/mpi/pt2pt/isend.lo
CC src/mpi/pt2pt/issend.lo
CC src/mpi/pt2pt/mprobe.lo
CC src/mpi/pt2pt/mrecv.lo
CC src/mpi/pt2pt/probe.lo
CC src/mpi/pt2pt/recv.lo
CC src/mpi/pt2pt/recv_init.lo
CC src/mpi/pt2pt/request_free.lo
CC src/mpi/pt2pt/request_get_status.lo
CC src/mpi/pt2pt/rsend.lo
CC src/mpi/pt2pt/rsend_init.lo
CC src/mpi/pt2pt/send.lo
CC src/mpi/pt2pt/send_init.lo
CC src/mpi/pt2pt/sendrecv.lo
CC src/mpi/pt2pt/sendrecv_rep.lo
CC src/mpi/pt2pt/status_set_cancelled.lo
CC src/mpi/pt2pt/ssend.lo
CC src/mpi/pt2pt/ssend_init.lo
CC src/mpi/pt2pt/start.lo
CC src/mpi/pt2pt/startall.lo
CC src/mpi/pt2pt/test.lo
CC src/mpi/pt2pt/test_cancelled.lo
CC src/mpi/pt2pt/testall.lo
CC src/mpi/pt2pt/testany.lo
CC src/mpi/pt2pt/testsome.lo
CC src/mpi/pt2pt/wait.lo
CC src/mpi/pt2pt/waitall.lo
CC src/mpi/pt2pt/waitany.lo
CC src/mpi/pt2pt/waitsome.lo
CC src/mpi/rma/accumulate.lo
CC src/mpi/rma/alloc_mem.lo
CC src/mpi/rma/compare_and_swap.lo
CC src/mpi/rma/fetch_and_op.lo
CC src/mpi/rma/free_mem.lo
CC src/mpi/rma/get.lo
CC src/mpi/rma/get_accumulate.lo
CC src/mpi/rma/put.lo
CC src/mpi/rma/raccumulate.lo
CC src/mpi/rma/rget.lo
CC src/mpi/rma/rget_accumulate.lo
CC src/mpi/rma/rput.lo
CC src/mpi/rma/win_allocate.lo
CC src/mpi/rma/win_allocate_shared.lo
CC src/mpi/rma/win_attach.lo
CC src/mpi/rma/win_complete.lo
CC src/mpi/rma/win_create.lo
CC src/mpi/rma/win_create_dynamic.lo
CC src/mpi/rma/win_detach.lo
CC src/mpi/rma/win_fence.lo
CC src/mpi/rma/win_flush.lo
CC src/mpi/rma/win_flush_all.lo
CC src/mpi/rma/win_flush_local.lo
CC src/mpi/rma/win_flush_local_all.lo
CC src/mpi/rma/win_free.lo
CC src/mpi/rma/win_get_group.lo
CC src/mpi/rma/win_get_info.lo
CC src/mpi/rma/win_get_name.lo
CC src/mpi/rma/win_lock.lo
CC src/mpi/rma/win_lock_all.lo
CC src/mpi/rma/win_post.lo
CC src/mpi/rma/win_set_info.lo
CC src/mpi/rma/win_set_name.lo
CC src/mpi/rma/win_shared_query.lo
CC src/mpi/rma/win_start.lo
CC src/mpi/rma/win_sync.lo
CC src/mpi/rma/win_test.lo
CC src/mpi/rma/win_unlock.lo
CC src/mpi/rma/win_unlock_all.lo
CC src/mpi/rma/win_wait.lo
CC src/mpi/spawn/comm_disconnect.lo
CC src/mpi/spawn/comm_get_parent.lo
CC src/mpi/spawn/comm_join.lo
CC src/mpi/spawn/comm_spawn.lo
CC src/mpi/spawn/comm_spawn_multiple.lo
CC src/mpi/spawn/lookup_name.lo
CC src/mpi/spawn/publish_name.lo
CC src/mpi/spawn/unpublish_name.lo
CC src/mpi/spawn/open_port.lo
CC src/mpi/spawn/close_port.lo
CC src/mpi/spawn/comm_connect.lo
CC src/mpi/spawn/comm_accept.lo
CC src/mpi/timer/wtime.lo
CC src/mpi/timer/wtick.lo
CC src/mpi/topo/cart_coords.lo
CC src/mpi/topo/cart_create.lo
CC src/mpi/topo/cart_get.lo
CC src/mpi/topo/cart_map.lo
CC src/mpi/topo/cart_rank.lo
CC src/mpi/topo/cart_shift.lo
CC src/mpi/topo/cart_sub.lo
CC src/mpi/topo/dims_create.lo
CC src/mpi/topo/graph_get.lo
CC src/mpi/topo/graph_map.lo
CC src/mpi/topo/graph_nbr.lo
CC src/mpi/topo/graphcreate.lo
CC src/mpi/topo/graphdimsget.lo
CC src/mpi/topo/graphnbrcnt.lo
CC src/mpi/topo/cartdim_get.lo
CC src/mpi/topo/topo_test.lo
CC src/mpi/topo/dist_gr_create_adj.lo
CC src/mpi/topo/dist_gr_create.lo
CC src/mpi/topo/dist_gr_neighb_count.lo
CC src/mpi/topo/dist_gr_neighb.lo
CC src/mpi/topo/inhb_allgather.lo
CC src/mpi/topo/inhb_allgatherv.lo
CC src/mpi/topo/inhb_alltoall.lo
CC src/mpi/topo/inhb_alltoallv.lo
CC src/mpi/topo/inhb_alltoallw.lo
CC src/mpi/topo/nhb_allgather.lo
CC src/mpi/topo/nhb_allgatherv.lo
CC src/mpi/topo/nhb_alltoall.lo
CC src/mpi/topo/nhb_alltoallv.lo
CC src/mpi/topo/nhb_alltoallw.lo
CC src/mutex/mutex_create.lo
CC src/mutex/mutex_free.lo
CC src/mutex/mutex_lock.lo
CC src/mutex/mutex_unlock.lo
CC src/mpi_t/cat_changed.lo
CC src/mpi_t/cat_get_categories.lo
CC src/mpi_t/cat_get_cvars.lo
CC src/mpi_t/cat_get_info.lo
CC src/mpi_t/cat_get_num.lo
CC src/mpi_t/cat_get_pv.lo
CC src/mpi_t/cvar_get_info.lo
CC src/mpi_t/cvar_get_num.lo
CC src/mpi_t/cvar_handle_alloc.lo
CC src/mpi_t/cvar_handle_free.lo
CC src/mpi_t/cvar_read.lo
CC src/mpi_t/cvar_write.lo
CC src/mpi_t/enum_get_info.lo
CC src/mpi_t/enum_get_item.lo
CC src/mpi_t/mpit_finalize.lo
CC src/mpi_t/mpit_init_thread.lo
CC src/mpi_t/pvar_get_info.lo
CC src/mpi_t/pvar_get_num.lo
CC src/mpi_t/pvar_handle_alloc.lo
CC src/mpi_t/pvar_handle_free.lo
CC src/mpi_t/pvar_read.lo
CC src/mpi_t/pvar_readreset.lo
CC src/mpi_t/pvar_reset.lo
CC src/mpi_t/pvar_session_create.lo
CC src/mpi_t/pvar_session_free.lo
CC src/mpi_t/pvar_start.lo
CC src/mpi_t/pvar_stop.lo
CC src/mpi_t/pvar_write.lo
GEN lib/libmpich.la
CXX src/binding/cxx/initcxx.lo
CXXLD lib/libmpichcxx.la
CC src/env/mpichversion.o
CCLD src/env/mpichversion
cp -p src/env/mpicc.bash src/env/mpicc
cp -p src/env/mpicxx.bash src/env/mpicxx
make[2]: Leaving directory `/tmp/jaroslaw/mpich-3.0.4'
Making all in examples
make[2]: Entering directory `/tmp/jaroslaw/mpich-3.0.4/examples'
CC cpi.o
CCLD cpi
make[2]: Leaving directory `/tmp/jaroslaw/mpich-3.0.4/examples'
make[1]: Leaving directory `/tmp/jaroslaw/mpich-3.0.4'
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