[mpich-discuss] MPICH 3.1rc2 build error on Darwin.
Salmon, Rene
salmr0 at bp.com
Mon Jan 13 22:12:51 CST 2014
Thanks for the replies. Here is a bit more info. I tried this with both mpich 3.1rc2 and mpich 3.0.4
mpich 3.1rc2
============
This seems to compile with out any error messages using gcc.
./configure CC=gcc CXX=g++ F77=gfortran FC=gfortran --prefix=/opt/ilocal/ --enable-fc
make
mpich 3.1rc2
=========
This fails. I have the output of make V=1 at the end of this email.
./configure CC=icc CXX=icpc F77=ifort FC=ifort --prefix=/opt/ilocal/ --enable-fc
make
mpich 3.0.4
===========
This seems to work with mpich 3.0.4. No error messages.
./configure CC=icc CXX=icpc F77=ifort FC=ifort --prefix=/opt/ilocal/ --enable-fc
make
Here is the output to make V=1 for mpich 3.2rc2 using intel compilers.
================================
In file included from ../src/include/mpi.h(2145),
from cpi.c(7):
../src/include/mpio.h(227): warning #1787: alias definitions not supported on this platform; attribute ignored
int MPI_File_get_atomicity(MPI_File fh, int *flag) MPICH_ATTR_WEAK_ALIAS("PMPI_File_get_atomicity");
^
In file included from ../src/include/mpi.h(2145),
from cpi.c(7):
../src/include/mpio.h(228): warning #1787: alias definitions not supported on this platform; attribute ignored
int MPI_File_sync(MPI_File fh) MPICH_ATTR_WEAK_ALIAS("PMPI_File_sync");
^
In file included from ../src/include/mpi.h(2145),
from cpi.c(7):
../src/include/mpio.h(264): warning #1787: alias definitions not supported on this platform; attribute ignored
MPI_File MPI_File_f2c(MPI_Fint file) MPICH_ATTR_WEAK_ALIAS("PMPI_File_f2c");
^
In file included from ../src/include/mpi.h(2145),
from cpi.c(7):
../src/include/mpio.h(265): warning #1787: alias definitions not supported on this platform; attribute ignored
MPI_Fint MPI_File_c2f(MPI_File file) MPICH_ATTR_WEAK_ALIAS("PMPI_File_c2f");
^
/bin/sh ../libtool --tag=CC --mode=link icc -O2 -L../lib -L/opt/ilocal/src/mpich-3.1rc2/src/mpl -L/opt/ilocal/src/mpich-3.1rc2/src/openpa/src -Wl,-flat_namespace -static -Wl,-flat_namespace -o cpi cpi.o -lm -lpthread -lmpich -lmpl -lopa -lopa -lmpl -lpthread
libtool: link: icc -O2 -Wl,-flat_namespace -Wl,-flat_namespace -o cpi cpi.o -L../lib -L/opt/ilocal/src/mpich-3.1rc2/src/mpl -L/opt/ilocal/src/mpich-3.1rc2/src/openpa/src -lm /opt/ilocal/src/mpich-3.1rc2/lib/.libs/libmpich.a /opt/ilocal/src/mpich-3.1rc2/src/openpa/src/.libs/libopa.a /opt/ilocal/src/mpich-3.1rc2/src/mpl/.libs/libmpl.a -lpthread
Undefined symbols for architecture x86_64:
"_MPI_Bcast", referenced from:
_main in cpi.o
"_MPI_Comm_rank", referenced from:
_main in cpi.o
"_MPI_Comm_size", referenced from:
_main in cpi.o
"_MPI_Finalize", referenced from:
_main in cpi.o
"_MPI_Get_processor_name", referenced from:
_main in cpi.o
"_MPI_Init", referenced from:
_main in cpi.o
"_MPI_Reduce", referenced from:
_main in cpi.o
"_MPI_Wtime", referenced from:
_main in cpi.o
ld: symbol(s) not found for architecture x86_64
make[2]: *** [cpi] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2
-----Original Message-----
From: discuss-bounces at mpich.org on behalf of Eric A. Borisch
Sent: Mon 1/13/2014 12:39 AM
To: discuss at mpich.org
Subject: [mpich-discuss] MPICH 3.1rc2 build error on Darwin.
He's building with icc/ifort, so it's not being done via MacPorts. I don't think he even needs MP or Homebrew installed to build MPICH, just Intel's tools (and Xcode).
Building with 'make V=1' (or configuring with --disable-silent-rules) will provide more insight into what is going on. If you do have MP or Homebrew installed, you can rule out most interaction by removing their locations (/opt/local/bin, or /usr/local/bin, respectively) from PATH.
Jeff, I'm sorry to year you were unhappy with the (MP) tools. FWIW, it's been reworked to have a standardized MPICH version (with GCC's Fortan and the system's default C compiler) that is installed for use by any (macports-built) package that needs it.
Thanks,
- Eric
On Sunday, January 12, 2014, Jeff Hammond wrote:
Might be the MacPorts garbage that bit me a while back too. If GCC fails, I suggest wiping MacPorts and installing Homebrew and the associated toolchain.
Jeff
Sent from my iPhone
> On Jan 12, 2014, at 7:58 PM, Rajeev Thakur <thakur at mcs.anl.gov> wrote:
>
> It sounds like a 32-bit, 64-bit incompatibility between some installed compilers/linker. Are you able to build with gcc?
>
>
>> On Jan 10, 2014, at 3:09 PM, "Salmon, Rene" <salmr0 at bp.com> wrote:
>>
>>
>> Hi,
>>
>> Just trying to build MPICH 3.1rc2 on a Mac. The build seems to work but fails while trying to compile the examples. This is using the intel compilers.
>>
>> ifort,icc version 14.0.0.074
>>
>> Here is the config line.
>> ./configure CC=icc CXX=icpc F77=ifort FC=ifort --enable-fc
>>
>>
>> error message.
>>
>> make[4]: Nothing to be done for `all'.
>> make[4]: Nothing to be done for `all-am'.
>> Making all in .
>> Making all in .
>> Making all in examples
>> CCLD cpi
>> Undefined symbols for architecture x86_64:
>> "_MPI_Bcast", referenced from:
>> _main in cpi.o
>> "_MPI_Comm_rank", referenced from:
>> _main in cpi.o
>> "_MPI_Comm_size", referenced from:
>> _main in cpi.o
>> "_MPI_Finalize", referenced from:
>> _main in cpi.o
>> "_MPI_Get_processor_name", referenced from:
>> _main in cpi.o
>> "_MPI_Init", referenced from:
>> _main in cpi.o
>> "_MPI_Reduce", referenced from:
>> _main in cpi.o
>> "_MPI_Wtime", referenced from:
>> _main in cpi.o
>> ld: symbol(s) not found for architecture x86_64
>> make[2]: *** [cpi] Error 1
>> make[1]: *** [all-recursive] Error 1
>> make: *** [all] Error 2
>>
>> Thank you.
>>
>> Rene
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