[mpich-discuss] mpirun not running in batch mode.
Reuti
reuti at staff.uni-marburg.de
Wed Jun 11 04:24:19 CDT 2014
Hi,
Am 11.06.2014 um 10:55 schrieb Francisco Pastor:
> Hi mpich users
>
> I know I am using an old version of mpich but this one has been working for a long time so when building a new cluster we decided to use the same one. The point is that we have installed RAMS meteorological model with mpich2-1.0.5 and it runs fine when running from console but not with cron or at.
Is it running at root then or by a normal user? The path may be different when starting with these methodes too.
As it's a new cluster: did you look into the option to install a queuing system?
-- Reuti
> If the script that runs the model is scheduled with cron it just starts processes on the main node but not in the rest of the cluster nodes.
>
> While waiting for your help I will try to upgrade to a newer mpich version.
>
> I can't find the reason why this is happening, probably I made some mistake. Can you help me? Any idea will be welcome and tried.
>
> Following I attach some information that could be useful to understand my problem.
>
> meteo at ventus:~$ mpich2version
> Version: 1.0.5
> Device: ch3:sock
> Configure Options:
> CC: gcc
> CXX: c++
> F77: f95
> F90: f95
>
>
> Processes in the main node when run with `at`
>
> meteo at ventus:~/RAMS/RUN$ ps -ef | grep rams
> meteo 20324 18460 0 09:32 ? 00:00:00 python2 /usr/local/mpich2-1.0.5p4/bin/mpirun -envall -n 40 ./rams60 -f RAMSIN.operatiu
> meteo 20331 20326 0 09:32 ? 00:00:00 ./rams60 -f RAMSIN.operatiu
> meteo 20332 20327 0 09:32 ? 00:00:00 ./rams60 -f RAMSIN.operatiu
> meteo 20333 20328 0 09:32 ? 00:00:00 ./rams60 -f RAMSIN.operatiu
> meteo 20334 20329 0 09:32 ? 00:00:00 ./rams60 -f RAMSIN.operatiu
> meteo 20335 20330 0 09:32 ? 00:00:00 ./rams60 -f RAMSIN.operatiu
> meteo 20336 20325 0 09:32 ? 00:00:00 ./rams60 -f RAMSIN.operatiu
> meteo 20343 18113 0 09:33 pts/4 00:00:00 grep --color=auto rams
>
> log of mpirun
>
> meteo at ventus:~/RAMS/RUN$ cat log_rams_operatiu-INITIAL-20140611-0000
> in main 1024
> numarg: 2
> in main 1024
> numarg: 2
> in main 1024
> numarg: 2
> in main 1024
> numarg: 2
> in main 1024
> numarg: 2
> in main 1024
> numarg: 2
> in main 1024
> numarg: 2
> in main 1024
> numarg: 2
> par init numargs: 3 ./rams60 1024 0
> par init args: 0 argvp[i] ./rams60
> par init args: 1 argvp[i] -f
> par init args: 2 argvp[i] RAMSIN.operatiu
> par init RAMS_MPI defined
> par init numargs: 3 ./rams60 1024 0
> par init args: 0 argvp[i] ./rams60
> par init args: 1 argvp[i] -f
> par init args: 2 argvp[i] RAMSIN.operatiu
> par init RAMS_MPI defined
> par init numargs: 3 ./rams60 1024 0
> par init args: 0 argvp[i] ./rams60
> par init args: 1 argvp[i] -f
> par init args: 2 argvp[i] RAMSIN.operatiu
> par init RAMS_MPI defined
> par init numargs: 3 ./rams60 1024 0
> par init args: 0 argvp[i] ./rams60
> par init args: 1 argvp[i] -f
> par init args: 2 argvp[i] RAMSIN.operatiu
> par init RAMS_MPI defined
> par init numargs: 3 ./rams60 1024 0
> par init args: 0 argvp[i] ./rams60
> par init args: 1 argvp[i] -f
> par init args: 2 argvp[i] RAMSIN.operatiu
> par init RAMS_MPI defined
> par init numargs: 3 ./rams60 1024 0
> par init args: 0 argvp[i] ./rams60
> par init args: 1 argvp[i] -f
> par init args: 2 argvp[i] RAMSIN.operatiu
> par init RAMS_MPI defined
> par init numargs: 3 ./rams60 1024 0
> par init args: 0 argvp[i] ./rams60
> par init args: 1 argvp[i] -f
> par init args: 2 argvp[i] RAMSIN.operatiu
> par init RAMS_MPI defined
> par init numargs: 3 ./rams60 1024 0
> par init args: 0 argvp[i] ./rams60
> par init args: 1 argvp[i] -f
> par init args: 2 argvp[i] RAMSIN.operatiu
> par init RAMS_MPI defined
>
> Mpich options to compile RAMS model
>
> MPI_PATH=/usr/local/mpich2-1.0.5p4
> PAR_INCS=-I$(MPI_PATH)/src/include
> PAR_LIBS=-L$(MPI_PATH)/lib/ -lmpich
> PAR_DEFS=-DRAMS_MPI
>
> Thank you very much for your help.
>
> --
> -----------
> Dr. Francisco Pastor
> Meteorology department, Instituto Universitario CEAM-UMH
> http://www.ceam.es
> -----------
> Mendeley profile: http://www.mendeley.com/profiles/francisco-pastor1/
> Google Scholar: http://scholar.google.com/citations?user=V3mmCdkAAAAJ&hl=es
> Researcher ID: http://www.researcherid.com/rid/B-8331-2008
> Cosis profile: http://www.cosis.net/profile/francisco.pastor
> -----------
> mail: paco at ceam.es
> skype: paco.pastor.guzman
> -----------
> Parque Tecnologico, C/ Charles R. Darwin, 14
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