[mpich-discuss] mpirun not running in batch mode.

Fri Jun 13 06:25:36 CDT 2014

Gilles,

This is running for the hostname script (giving exactly the same log for 
shell and crontab) but adding these two lines does not work for my 
original script.

Here is the output of my process:

Log of /usr/local/mpich2-1.0.5p4/bin/mpirun -n 40 ./rams60

  in main        1024
  numarg:           0
par init numargs: 1 ./rams60 1024 0
par init args: 0 argvp[i] ./rams60
par init RAMS_MPI defined
  in main        1024
  numarg:           0
par init numargs: 1 ./rams60 1024 0
par init args: 0 argvp[i] ./rams60
par init RAMS_MPI defined
  in main        1024
  numarg:           0
par init numargs: 1 ./rams60 1024 0
par init args: 0 argvp[i] ./rams60
par init RAMS_MPI defined

It starts three rams60 processes in the main node (ventus) and no 
processess in the rest of nodes (ventus2-5)

meteo at ventus:~/RAMS/RUN$ ps -ef | grep rams
meteo    11064 10476  0 13:01 ?        00:00:00 python2 
/usr/local/mpich2-1.0.5p4/bin/mpirun -n 40 ./rams60
meteo    11068 11066  0 13:01 ?        00:00:00 ./rams60
meteo    11069 11067  0 13:01 ?        00:00:00 ./rams60
meteo    11070 11065  0 13:01 ?        00:00:00 ./rams60
meteo    11362  9342  0 13:06 pts/7    00:00:00 grep --color=auto rams

These are RAMS compile options in case the problem is application related:

MPI_PATH=/usr/local/mpich2-1.0.5p4
PAR_INCS=-I$(MPI_PATH)/src/include
PAR_LIBS=-L$(MPI_PATH)/lib/ -lmpich
PAR_DEFS=-DRAMS_MPI

Thanks

El 13/06/2014 11:39, Gilles Gouaillardet escribió:
> Francisco,
>
> i cannot access to the vernote.com web site :-(
>
> anyway, you can try to add the following two lines :
>
> export PATH=/usr/local/mpich2-1.0.5/bin:$PATH
> export LD_LIBRARY_PATH=/usr/local/mpich2-1.0.5/lib:$LD_LIBRARY_PATH
>
> at the beginning of your cron script and try again
>
> Cheers,
>
> Gilles
>
> On 2014/06/13 18:44, Francisco Pastor wrote:
>> I tried what you said and it seems you are right about environment. In
>> the case run from crontab there is an error message telling mpirun is
>> not found and a warning:
>>
>> "ldd: faltan los ficheros de argumentos /(missing argument files)"/
>>
>> You can see full output of shell, at and crontab in:
>>
>>   https://www.evernote.com/shard/s162/sh/641d8db6-9252-49f5-b7d7-3592e0591c2f/f0bccdd25e1b5ac444879b6212f34912
>>
>>
>> Should I add export PATH=/usr/local/mpich2-1.0.5 to the script? I'm
>> gonna try. What about the ldd message?
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-- 
-----------
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http://www.ceam.es
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