[mpich-discuss] Fwd: Make MPICH on Arch Linux
Scott O'Malley
scottyomalley at gmail.com
Fri May 23 17:02:34 CDT 2014
After moving the build folder to my home directory I was able to get the
make command to start correctly but it's still crashing out with an error
which seems to stem from the gcc compiler, has anyone any advice?
I've attached the new m.txt and c.txt
Scott
On 23 May 2014 19:05, Kenneth Raffenetti <raffenet at mcs.anl.gov> wrote:
> I think you may be running into the OOM Killer. Is memory usage high on
> your machine? Is /tmp a tmpfs and not a real partition? If so, can you try
> building elsewhere?
>
> Ken
>
>
> On 05/23/2014 12:54 PM, Scott O'Malley wrote:
>
>> Hi Guys
>>
>> I'm trying to build MPICH for Arch but when I get to the Make section of
>> the user guide 3.1 I get an error, I've looked through the m.txt file as
>> the guide suggests but the error message isn't particularly helpful.
>>
>>
>>
>> --
>> - Scott
>>
>>
>>
>> --
>> - Scott
>>
>>
>> _______________________________________________
>> discuss mailing list discuss at mpich.org
>> To manage subscription options or unsubscribe:
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>>
>> _______________________________________________
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--
- Scott
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Configuring MPICH version 3.1 with '-prefix=/home/pi/mpich-install/' '--disable-f77' '--disable-fc'
Running on system: Linux alarmpi 3.10.38-1-ARCH #1 PREEMPT Sun Apr 27 13:01:46 MDT 2014 armv6l GNU/Linux
checking for icc... no
checking for pgcc... no
checking for xlc... no
checking for xlC... no
checking for pathcc... no
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking how to run the C preprocessor... gcc -E
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking whether make supports nested variables... yes
checking dependency style of gcc... gcc3
checking whether to enable maintainer-specific portions of Makefiles... yes
checking for ar... ar
checking the archiver (ar) interface... ar
checking build system type... armv6l-unknown-linux-gnueabihf
checking host system type... armv6l-unknown-linux-gnueabihf
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert armv6l-unknown-linux-gnueabihf file names to armv6l-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert armv6l-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking whether make supports nested variables... (cached) yes
checking for icpc... no
checking for pgCC... no
checking for xlC... no
checking for pathCC... no
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... yes
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether we are using the GNU Fortran 77 compiler... no
checking whether no accepts -g... no
checking whether we are using the GNU Fortran compiler... no
checking whether no accepts -g... no
configure: RUNNING PREREQ FOR ch3:nemesis
checking for getpagesize... yes
checking for getpagesize... (cached) yes
configure: ===== configuring src/mpl =====
configure: running /bin/sh /home/pi/mpich-3.1/src/mpl/configure --disable-option-checking '--prefix=/home/pi/mpich-install' '--disable-f77' '--disable-fc' --cache-file=/dev/null --srcdir=/home/pi/mpich-3.1/src/mpl
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for style of include used by make... GNU
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking the archiver (ar) interface... ar
checking build system type... armv6l-unknown-linux-gnueabihf
checking host system type... armv6l-unknown-linux-gnueabihf
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert armv6l-unknown-linux-gnueabihf file names to armv6l-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert armv6l-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking whether make supports nested variables... (cached) yes
checking for an ANSI C-conforming const... yes
checking for C/C++ restrict keyword... __restrict
checking for inline... inline
checking for variable argument list macro functionality... yes
checking for gcov... gcov
checking whether the compiler supports __typeof(variable)... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking ctype.h usability... yes
checking ctype.h presence... yes
checking for ctype.h... yes
checking search.h usability... yes
checking search.h presence... yes
checking for search.h... yes
checking for sys/types.h... (cached) yes
checking sys/uio.h usability... yes
checking sys/uio.h presence... yes
checking for sys/uio.h... yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking valgrind.h usability... no
checking valgrind.h presence... no
checking for valgrind.h... no
checking memcheck.h usability... no
checking memcheck.h presence... no
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checking valgrind/valgrind.h usability... no
checking valgrind/valgrind.h presence... no
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checking valgrind/memcheck.h usability... no
checking valgrind/memcheck.h presence... no
checking for valgrind/memcheck.h... no
checking helgrind.h usability... no
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checking valgrind/helgrind.h usability... no
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checking for valgrind/helgrind.h... no
checking drd.h usability... no
checking drd.h presence... no
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checking valgrind/drd.h usability... no
checking valgrind/drd.h presence... no
checking for valgrind/drd.h... no
checking whether the valgrind headers are broken or too old... yes
checking for strdup... yes
checking whether strdup needs a declaration... no
checking for snprintf... yes
checking whether snprintf needs a declaration... no
checking for strncmp... yes
checking whether strncmp needs a declaration... no
checking for putenv... yes
checking whether putenv needs a declaration... no
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating localdefs
config.status: creating include/config.h
config.status: include/config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing include/mplconfig.h commands
config.status: creating include/mplconfig.h - prefix MPL for include/config.h defines
config.status: include/mplconfig.h is unchanged
configure: ===== done with src/mpl configure =====
configure: sourcing src/mpl/localdefs
configure: ===== configuring src/openpa =====
configure: running /bin/sh /home/pi/mpich-3.1/src/openpa/configure --disable-option-checking '--prefix=/home/pi/mpich-install' --with-atomic-primitives=auto_allow_emulation '--disable-f77' '--disable-fc' --cache-file=/dev/null --srcdir=/home/pi/mpich-3.1/src/openpa
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking the archiver (ar) interface... ar
checking build system type... armv6l-unknown-linux-gnueabihf
checking host system type... armv6l-unknown-linux-gnueabihf
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert armv6l-unknown-linux-gnueabihf file names to armv6l-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert armv6l-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking whether make supports nested variables... (cached) yes
checking for gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking whether gcc understands -c and -o together... (cached) yes
checking dependency style of gcc... (cached) gcc3
checking whether to enable assertions... yes
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking atomic.h usability... no
checking atomic.h presence... no
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checking intrin.h usability... no
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checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for C/C++ restrict keyword... __restrict
checking for inline... inline
checking for an ANSI C-conforming const... yes
checking for pthread_create in -lpthread... yes
checking for pthread_yield... yes
checking if 100 threads can be run at once... yes
checking size of void *... 4
checking size of int... 4
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking if compiler rejects bogus asm statements... yes
checking for support for gcc x86/x86_64 primitives... no
checking for support for gcc x86 primitives for pre-Pentium 4... no
checking for support for gcc ia64 primitives... no
checking for support for gcc PowerPC atomics... no
checking for support for gcc ARM atomics... no
checking for support for gcc SiCortex atomics... no
checking for support for gcc atomic intrinsics... yes
checking for support for Windows NT atomic intrinsics... no
checking for support for Sun atomic operations library... no
checking whether to enable strict fairness checks... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating openpa.pc
config.status: creating src/config.h
config.status: src/config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing src/opa_config.h commands
config.status: creating src/opa_config.h - prefix OPA for src/config.h defines
config.status: src/opa_config.h is unchanged
configure: ===== done with src/openpa configure =====
sourcing /home/pi/mpich-3.1/src/pm/hydra/mpichprereq
checking whether the compiler defines __func__... yes
checking whether the compiler defines __FUNC__... no
checking whether the compiler sets __FUNCTION__... yes
checking whether C compiler accepts option -O2... yes
checking whether C compiler option -O2 works with an invalid prototype program... yes
checking whether routines compiled with -O2 can be linked with ones compiled without -O2... yes
checking for type of weak symbol alias support... pragma weak
checking whether __attribute__ ((weak)) allowed... yes
checking whether __attribute__ ((weak_import)) allowed... yes
checking whether __attribute__((weak,alias(...))) allowed... no
checking for multiple weak symbol support... yes
checking for shared library (esp. rpath) characteristics of CC... done (results in src/env/cc_shlib.conf)
checking whether the C++ compiler g++ can build an executable... yes
checking whether C++ compiler works with string... yes
checking whether the compiler supports exceptions... yes
checking whether the compiler recognizes bool as a built-in type... yes
checking whether the compiler implements namespaces... yes
checking whether <iostream> available... yes
checking whether the compiler implements the namespace std... yes
checking whether <math> available... no
checking for GNU g++ version... 4 . 8
checking for shared library (esp. rpath) characteristics of CXX... done (results in src/env/cxx_shlib.conf)
checking for perl... /usr/bin/perl
checking for ar... ar
checking for ranlib... ranlib
checking for killall... killall
checking whether install works... yes
checking whether mkdir -p works... yes
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for bash... /usr/bin/bash
checking whether /usr/bin/bash supports arrays... yes
checking for doctext... false
checking for an ANSI C-conforming const... yes
checking for working volatile... yes
checking for C/C++ restrict keyword... __restrict
checking for inline... inline
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking if C compiler supports __builtin_expect... yes
checking whether byte ordering is bigendian... no
checking whether C compiler allows unaligned doubles... yes
checking whether gcc supports __func__... yes
checking whether long double is supported... yes
checking whether long long is supported... yes
checking for max C struct integer alignment... eight
checking for max C struct floating point alignment... sixteen
checking for max C struct alignment of structs with doubles... eight
checking for max C struct floating point alignment with long doubles... sixteen
configure: WARNING: Structures containing long doubles may be aligned differently from structures with floats or longs. MPICH does not handle this case automatically and you should avoid assumed extents for structures containing float types.
checking if alignment of structs with doubles is based on position... no
checking if alignment of structs with long long ints is based on position... no
checking if double alignment breaks rules, find actual alignment... no
checking for alignment restrictions on pointers... int or better
checking size of char... 1
checking size of unsigned char... 1
checking size of short... 2
checking size of unsigned short... 2
checking size of int... 4
checking size of unsigned int... 4
checking size of long... 4
checking size of unsigned long... 4
checking size of long long... 8
checking size of unsigned long long... 8
checking size of float... 4
checking size of double... 8
checking size of long double... 8
checking size of void *... 4
checking for ANSI C header files... (cached) yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking size of wchar_t... 4
checking size of float_int... 8
checking size of double_int... 16
checking size of long_int... 8
checking size of short_int... 8
checking size of two_int... 8
checking size of long_double_int... 16
checking sys/bitypes.h usability... yes
checking sys/bitypes.h presence... yes
checking for sys/bitypes.h... yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for int8_t... yes
checking for int16_t... yes
checking for int32_t... yes
checking for int64_t... yes
checking for uint8_t... yes
checking for uint16_t... yes
checking for uint32_t... yes
checking for uint64_t... yes
checking stdbool.h usability... yes
checking stdbool.h presence... yes
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checking complex.h usability... yes
checking complex.h presence... yes
checking for complex.h... yes
checking size of _Bool... 1
checking size of float _Complex... 8
checking size of double _Complex... 16
checking size of long double _Complex... 16
checking for _Bool... yes
checking for float _Complex... yes
checking for double _Complex... yes
checking for long double _Complex... yes
checking size of bool... 1
checking complex usability... yes
checking complex presence... yes
checking for complex... yes
checking size of Complex... 8
checking size of DoubleComplex... 16
checking size of LongDoubleComplex... 16
checking for alignment restrictions on int64_t... no
checking for alignment restrictions on int32_t... no
checking for gcc __asm__ and pentium cmpxchgl instruction... no
checking for gcc __asm__ and AMD x86_64 cmpxchgq instruction... no
checking for gcc __asm__ and IA64 xchg4 instruction... no
checking for gcov... gcov
checking for ANSI C header files... (cached) yes
checking for stdlib.h... (cached) yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking for sys/types.h... (cached) yes
checking for string.h... (cached) yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
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checking for stddef.h... (cached) yes
checking errno.h usability... yes
checking errno.h presence... yes
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checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
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checking sys/time.h usability... yes
checking sys/time.h presence... yes
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checking for unistd.h... (cached) yes
checking endian.h usability... yes
checking endian.h presence... yes
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checking assert.h usability... yes
checking assert.h presence... yes
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checking sys/param.h usability... yes
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checking for sys/param.h... yes
checking for sys/uio.h... yes
checking for size_t... yes
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checking whether vsnprintf needs a declaration... no
checking for strerror... yes
checking for strncasecmp... yes
checking whether strerror_r is declared... yes
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checking whether strerror_r returns char *... no
checking whether strerror_r needs a declaration... no
checking for snprintf... yes
checking whether snprintf needs a declaration... no
checking for qsort... yes
checking for va_copy... yes
checking for variable argument list macro functionality... yes
checking for working alloca.h... yes
checking for alloca... yes
checking for strdup... yes
checking whether strdup needs a declaration... no
checking for mkstemp... yes
checking whether mkstemp needs a declaration... no
checking for fdopen... yes
checking whether fdopen needs a declaration... yes
checking for putenv... yes
checking whether putenv needs a declaration... no
checking for clock_gettime... yes
checking for clock_getres... yes
checking for gethrtime... no
checking for mach_absolute_time... no
checking for gettimeofday... yes
checking for library containing clock_gettime... none required
checking for library containing clock_getres... none required
checking whether struct timespec is defined in time.h... yes
checking for CLOCK_REALTIME defined in time.h... yes
checking size of MPIR_Bsend_data_t... 56
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for pthread_key_create in -lpthread... yes
checking for pthread_yield... yes
checking for pthread_key_create... yes
checking for pthread_cleanup_push... no
checking whether pthread_cleanup_push is available (may be a macro in pthread.h)... no
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configure: RUNNING CONFIGURE FOR CH3 DEVICE
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configure: RUNNING CONFIGURE FOR ch3:nemesis
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configure: Using a memory-mapped file for shared memory
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configure: ===== configuring src/mpi/romio =====
configure: running /bin/sh /home/pi/mpich-3.1/src/mpi/romio/configure --disable-option-checking '--prefix=/home/pi/mpich-install' '--disable-f77' '--disable-fc' --cache-file=/dev/null --srcdir=/home/pi/mpich-3.1/src/mpi/romio
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checking whether build environment is sane... yes
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checking for gawk... gawk
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checking whether make supports nested variables... yes
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checking whether the C compiler works... yes
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checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking the archiver (ar) interface... ar
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checking host system type... armv6l-unknown-linux-gnueabihf
checking how to print strings... printf
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checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
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checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
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checking command to parse /usr/bin/nm -B output from gcc object... ok
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checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
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Configuring with args dummy mt
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checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for architecture... LINUX
ROMIO home directory is /home/pi/mpich-3.1/src/mpi/romio
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checking size of long long... 8
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Overriding Array test for MPICH
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checking whether struct flock compatible with MPI_Offset... yes
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checking configured file systems... testfs ufs nfs
configure: WARNING: File locks may not work with NFS. See the Installation and
users manual for instructions on testing and if necessary fixing this
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setting SYSDEP_INC to
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setting CC to gcc
setting F77 to :
setting TEST_CC to $(bindir)/mpicc
setting TEST_F77 to $(bindir)/mpif77
setting CFLAGS to -O2 -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -DHAVE_ROMIOCONF_H -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64
setting USER_CFLAGS to
setting USER_FFLAGS to
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating localdefs
config.status: creating mpi2-other/info/Makefile
config.status: creating mpi2-other/array/Makefile
config.status: creating test/Makefile
config.status: creating test/misc.c
config.status: creating test/large_file.c
config.status: creating test/runtests
config.status: creating test-internal/Makefile
config.status: creating util/romioinstall
config.status: creating include/mpio.h
config.status: creating include/mpiof.h
config.status: creating mpi2-other/info/fortran/Makefile
config.status: creating mpi2-other/array/fortran/Makefile
config.status: creating test/fmisc.f
config.status: creating test/fcoll_test.f
config.status: creating test/pfcoll_test.f
config.status: creating test/fperf.f
config.status: creating adio/include/romioconf.h
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing default-1 commands
configure: ===== done with src/mpi/romio configure =====
configure: sourcing src/mpi/romio/localdefs
configure: ===== configuring src/pm/hydra =====
configure: running /bin/sh /home/pi/mpich-3.1/src/pm/hydra/configure --disable-option-checking '--prefix=/home/pi/mpich-install' '--disable-f77' '--disable-fc' --cache-file=/dev/null --srcdir=/home/pi/mpich-3.1/src/pm/hydra
checking build system type... armv6l-unknown-linux-gnueabihf
checking host system type... armv6l-unknown-linux-gnueabihf
checking target system type... armv6l-unknown-linux-gnueabihf
checking whether the C compiler works... yes
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checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
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checking for sys/stat.h... yes
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checking whether build environment is sane... yes
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checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking whether make supports nested variables... yes
checking dependency style of gcc... gcc3
checking the archiver (ar) interface... ar
checking whether make supports nested variables... (cached) yes
checking for doctext... false
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checking for inline... inline
checking size of unsigned long... 4
checking for size_t... yes
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checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
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checking whether ln -s works... yes
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checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert armv6l-unknown-linux-gnueabihf file names to armv6l-unknown-linux-gnueabihf format... func_convert_file_noop
checking how to convert armv6l-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
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checking command to parse /usr/bin/nm -B output from gcc object... ok
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checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... yes
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checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for variable argument list macro functionality... yes
checking whether __attribute__ allowed... yes
checking whether __attribute__((format)) allowed... yes
checking whether the compiler defines __func__... yes
checking whether the compiler defines __FUNC__... no
checking whether the compiler sets __FUNCTION__... yes
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checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
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checking bootstrap server... user,ssh,rsh,fork,slurm,ll,lsf,sge,pbs,cobalt,manual,persist
checking tm.h usability... no
checking tm.h presence... no
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checking process manager... pmiserv
checking user interface... mpich
checking desired processor topology libraries... hwloc
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for X... libraries , headers
###
### Configuring hwloc core
###
checking hwloc building mode... embedded
configure: hwloc builddir: /home/pi/mpich-build/src/pm/hydra/tools/topo/hwloc/hwloc
configure: hwloc srcdir: /home/pi/mpich-3.1/src/pm/hydra/tools/topo/hwloc/hwloc
configure: Detected VPATH build
checking if want hwloc maintainer support... disabled (embedded mode)
checking for hwloc directory prefix... tools/topo/hwloc/hwloc/
checking for hwloc symbol prefix... hwloc_
checking size of void *... 4
checking which OS support to include... Linux
checking which CPU support to include... unknown
checking size of unsigned long... (cached) 4
checking size of unsigned int... 4
checking for the C compiler vendor... gnu
checking for __attribute__... yes
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checking if gcc supports -fvisibility=hidden... yes
checking whether to enable symbol visibility... yes (via -fvisibility=hidden)
configure: WARNING: "-fvisibility=hidden" has been added to the hwloc CFLAGS
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checking sys/mman.h presence... yes
checking for sys/mman.h... yes
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checking for main in -lgdi32... no
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checking picl.h usability... no
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checking whether function sched_setaffinity is declared... yes
checking for old prototype of sched_setaffinity... no
checking for working CPU_SET... yes
checking for working CPU_SET_S... yes
checking for working _syscall3... no
checking for KERRIGHED... no
checking for lib... no
checking for bash... /bin/sh
checking for ffs... yes
checking whether function ffs is declared... yes
checking for ffsl... yes
checking whether function ffsl is declared... yes
checking for fls... no
checking for flsl... no
checking for clz... no
checking for clzl... no
checking for openat... yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking for getpagesize... yes
checking for memalign... yes
checking for posix_memalign... yes
checking sys/utsname.h usability... yes
checking sys/utsname.h presence... yes
checking for sys/utsname.h... yes
checking for uname... yes
checking pthread_np.h usability... no
checking pthread_np.h presence... no
checking for pthread_np.h... no
checking whether pthread_setaffinity_np is declared... yes
checking whether pthread_getaffinity_np is declared... yes
checking for sched_setaffinity... yes
checking for sys/cpuset.h... no
checking for cpuset_setaffinity... no
checking for library containing pthread_getthrds_np... no
checking for cpuset_setid... no
checking numaif.h usability... no
checking numaif.h presence... no
checking for numaif.h... no
checking for PCIACCESS... yes
checking for pci_slot_match_iterator_create... yes
checking for final PCIACCESS support... yes
checking CL/cl_ext.h usability... no
checking CL/cl_ext.h presence... no
checking for CL/cl_ext.h... no
checking cuda.h usability... no
checking cuda.h presence... no
checking for cuda.h... no
checking cuda_runtime_api.h usability... no
checking cuda_runtime_api.h presence... no
checking for cuda_runtime_api.h... no
checking nvml.h usability... no
checking nvml.h presence... no
checking for nvml.h... no
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... no
checking X11/Xlib.h usability... yes
checking X11/Xlib.h presence... yes
checking for X11/Xlib.h... yes
checking for XOpenDisplay in -lX11... yes
checking X11/Xutil.h usability... yes
checking X11/Xutil.h presence... yes
checking for X11/Xutil.h... yes
checking X11/keysym.h usability... yes
checking X11/keysym.h presence... yes
checking for X11/keysym.h... yes
checking NVCtrl/NVCtrl.h usability... no
checking NVCtrl/NVCtrl.h presence... no
checking for NVCtrl/NVCtrl.h... no
checking for LIBXML2... yes
checking for xmlNewDoc... yes
checking for final LIBXML2 support... yes
checking for cpuid... no
checking for pthread_mutex_lock... yes
checking if plugin support is enabled... no
checking components to build statically... noos xml synthetic custom xml_nolibxml linux linuxpci pci xml_libxml
checking components to build as plugins...
checking available processor topology libraries... hwloc
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for pthread_key_create in -lpthread... yes
checking checkpointing library... blcr
checking libcr.h usability... no
checking libcr.h presence... no
checking for libcr.h... no
checking for cr_init in -lcr... no
checking demux engine... poll,select,port
checking for poll... yes
checking for select... yes
checking debugging support... none
checking error checking... yes
checking warnings... no
checking profiling... yes
checking libftb.h usability... no
checking libftb.h presence... no
checking for libftb.h... no
checking for FTB_Connect in -lftb... no
checking for strsignal... (cached) yes
checking whether strsignal needs a declaration... no
checking for sigaction... (cached) yes
checking for signal... (cached) yes
checking for sigset... yes
checking for struct sigaction and sa_handler... yes
checking for gethostname... yes
checking whether gethostname needs a declaration... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating tools/topo/hwloc/hwloc/Makefile
config.status: creating tools/topo/hwloc/hwloc/include/Makefile
config.status: creating tools/topo/hwloc/hwloc/src/Makefile
config.status: creating Makefile
config.status: creating tools/bootstrap/src/bsci_init.c
config.status: creating hydra-doxygen.cfg
config.status: creating include/hydra_config.h
config.status: creating tools/topo/hwloc/hwloc/include/private/autogen/config.h
config.status: creating tools/topo/hwloc/hwloc/include/hwloc/autogen/config.h
config.status: executing depfiles commands
config.status: executing libtool commands
configure: ===== done with src/pm/hydra configure =====
checking size of OPA_ptr_t... 4
configure: WARNING: Could not define Fortran MPI datatypes for C
checking the sizeof MPI_Offset... 8
checking for size of MPI_Status... 20
configure: WARNING: The ch3 device did not set the maximum size of an error string, 512 being used.
configure: creating ./config.lt
config.lt: creating libtool
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating src/mpid/ch3/channels/nemesis/include/mpid_nem_net_module_defs.h
config.status: creating src/mpid/ch3/channels/nemesis/src/mpid_nem_net_array.c
config.status: creating Makefile
config.status: creating examples/Makefile
config.status: creating test/Makefile
config.status: creating test/commands/Makefile
config.status: creating src/include/mpichinfo.h
config.status: creating mpich-doxygen
config.status: creating src/include/glue_romio.h
config.status: creating src/include/mpichtimer.h
config.status: creating src/binding/cxx/mpicxx.h
config.status: creating src/binding/f77/mpif.h
config.status: creating src/binding/f77/setbotf.f
config.status: creating src/binding/f77/setbot.c
config.status: creating src/binding/f90/mpi_sizeofs.f90
config.status: creating src/binding/f90/mpi_base.f90
config.status: creating src/binding/f90/mpi_constants.f90
config.status: creating src/packaging/pkgconfig/mpich.pc
config.status: creating src/packaging/envmods/mpich.module
config.status: WARNING: '/home/pi/mpich-3.1/src/packaging/envmods/mpich.module.in' seems to ignore the --datarootdir setting
config.status: creating src/env/mpixxx_opts.conf
config.status: creating src/env/mpicc.sh
config.status: creating src/env/mpicc.bash
config.status: creating src/env/mpicxx.sh
config.status: creating src/env/mpicxx.bash
config.status: creating src/env/mpif77.sh
config.status: creating src/env/mpif77.bash
config.status: creating src/env/mpif90.sh
config.status: creating src/env/mpif90.bash
config.status: creating src/env/parkill
config.status: creating src/util/dbg/getfuncstack
config.status: creating src/include/mpi.h
config.status: creating doc/design/Makefile
config.status: creating doc/installguide/Makefile
config.status: creating doc/logging/Makefile
config.status: creating doc/refman/Makefile
config.status: creating doc/userguide/Makefile
config.status: creating test/commands/cmdtests
config.status: creating src/include/mpichconf.h
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing default-1 commands
config.status: executing default-2 commands
config.status: executing default-3 commands
config.status: executing default-4 commands
config.status: executing default-5 commands
=== configuring in test/mpi (/home/pi/mpich-build/test/mpi)
configure: running /bin/sh /home/pi/mpich-3.1/test/mpi/configure --disable-option-checking '--prefix=/home/pi/mpich-install' '--disable-f77' '--disable-fc' --cache-file=/dev/null --srcdir=/home/pi/mpich-3.1/test/mpi
RUNNING CONFIGURE FOR MPI TESTS
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... yes
checking whether make supports nested variables... (cached) yes
checking for make... make
checking whether clock skew breaks make... no
checking whether make supports include... yes
checking whether make allows comments in actions... yes
checking for virtual path format... VPATH
checking whether make sets CFLAGS... yes
checking for style of include used by make... GNU
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... gcc3
checking whether long double is supported... yes
checking whether long long is supported... yes
checking for an ANSI C-conforming const... yes
checking for C/C++ restrict keyword... __restrict
checking for ranlib... ranlib
checking the archiver (ar) interface... ar
checking for grep that handles long lines and -e... /usr/bin/grep
checking for fgrep... /usr/bin/grep -F
checking how to run the C preprocessor... gcc -E
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking sys/resource.h usability... yes
checking sys/resource.h presence... yes
checking for sys/resource.h... yes
checking for int8_t... yes
checking for int16_t... yes
checking for int32_t... yes
checking for int64_t... yes
checking for uint8_t... yes
checking for uint16_t... yes
checking for uint32_t... yes
checking for uint64_t... yes
checking for _Bool... yes
checking for float _Complex... yes
checking for double _Complex... yes
checking for long double _Complex... yes
checking size of void *... 4
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for library containing pthread_create... -lpthread
checking for library containing pthread_barrier_init... none required
checking for pthread_create... yes
checking for pthread_yield... yes
checking for pthread_barrier_init... yes
checking for pthread_barrier_wait... yes
checking whether struct hostent contains h_addr_list... yes
checking for getrusage... yes
checking whether we are using the GNU Fortran 77 compiler... no
checking whether no accepts -g... no
configure: WARNING: Selecting integer*8 as the Fortran type for MPI_Offset
configure: WARNING: Selecting integer as the Fortran type for MPI_Aint
checking whether we are using the GNU Fortran compiler... no
checking whether no accepts -g... no
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking whether <iostream> available... yes
checking whether the compiler implements namespaces... yes
checking whether the compiler implements the namespace std... yes
checking whether MPI_2DOUBLE_COMPLEX is available... yes
checking whether MPI_2COMPLEX is available... yes
checking size of void *... (cached) 4
checking size of int... 4
checking size of long... 4
checking size of long long... 8
checking size of short... 2
checking for C integer type of address size... int
checking for perl... /usr/bin/perl
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating maint/testmerge
config.status: creating runtests
config.status: creating checktests
config.status: creating Makefile
config.status: creating basic/Makefile
config.status: creating attr/Makefile
config.status: creating util/Makefile
config.status: creating coll/Makefile
config.status: creating comm/Makefile
config.status: creating datatype/Makefile
config.status: creating datatype/testlist
config.status: creating errhan/Makefile
config.status: creating group/Makefile
config.status: creating info/Makefile
config.status: creating init/Makefile
config.status: creating pt2pt/Makefile
config.status: creating mpi_t/Makefile
config.status: creating rma/Makefile
config.status: creating rma/testlist
config.status: creating spawn/Makefile
config.status: creating topo/Makefile
config.status: creating io/Makefile
config.status: creating f77/Makefile
config.status: creating f77/attr/Makefile
config.status: creating f77/attr/attraints.h
config.status: creating f77/pt2pt/attr1aints.h
config.status: creating f77/ext/add1size.h
config.status: creating f77/datatype/Makefile
config.status: creating f77/datatype/typeaints.h
config.status: creating f77/util/Makefile
config.status: creating f77/coll/Makefile
config.status: creating f77/comm/Makefile
config.status: creating f77/topo/Makefile
config.status: creating f77/init/Makefile
config.status: creating f77/rma/addsize.h
config.status: creating f77/pt2pt/Makefile
config.status: creating f77/info/Makefile
config.status: creating f77/spawn/Makefile
config.status: creating f77/spawn/testlist
config.status: creating f77/spawn/type1aint.h
config.status: creating f77/rma/Makefile
config.status: creating f77/ext/Makefile
config.status: creating f77/ext/testlist
config.status: creating f77/io/Makefile
config.status: creating f77/io/iooffset.h
config.status: creating f77/io/iodisp.h
config.status: creating f77/io/ioaint.h
config.status: creating f77/profile/Makefile
config.status: creating f90/Makefile
config.status: creating f90/attr/Makefile
config.status: creating f90/datatype/Makefile
config.status: creating f90/f90types/Makefile
config.status: creating f90/util/Makefile
config.status: creating f90/coll/Makefile
config.status: creating f90/comm/Makefile
config.status: creating f90/topo/Makefile
config.status: creating f90/init/Makefile
config.status: creating f90/pt2pt/Makefile
config.status: creating f90/rma/Makefile
config.status: creating f90/info/Makefile
config.status: creating f90/spawn/Makefile
config.status: creating f90/spawn/testlist
config.status: creating f90/timer/Makefile
config.status: creating f90/ext/Makefile
config.status: creating f90/ext/testlist
config.status: creating f90/io/Makefile
config.status: creating f90/misc/Makefile
config.status: creating f90/profile/Makefile
config.status: creating cxx/Makefile
config.status: creating cxx/util/Makefile
config.status: creating cxx/attr/Makefile
config.status: creating cxx/pt2pt/Makefile
config.status: creating cxx/comm/Makefile
config.status: creating cxx/coll/Makefile
config.status: creating cxx/errhan/Makefile
config.status: creating cxx/info/Makefile
config.status: creating cxx/datatype/Makefile
config.status: creating cxx/io/Makefile
config.status: creating cxx/init/Makefile
config.status: creating cxx/rma/Makefile
config.status: creating cxx/spawn/Makefile
config.status: creating cxx/topo/Makefile
config.status: creating threads/Makefile
config.status: creating threads/pt2pt/Makefile
config.status: creating threads/util/Makefile
config.status: creating threads/comm/Makefile
config.status: creating threads/init/Makefile
config.status: creating threads/mpi_t/Makefile
config.status: creating threads/spawn/Makefile
config.status: creating threads/rma/Makefile
config.status: creating errors/Makefile
config.status: creating errors/attr/Makefile
config.status: creating errors/basic/Makefile
config.status: creating errors/coll/Makefile
config.status: creating errors/comm/Makefile
config.status: creating errors/datatype/Makefile
config.status: creating errors/faults/Makefile
config.status: creating errors/group/Makefile
config.status: creating errors/pt2pt/Makefile
config.status: creating errors/rma/Makefile
config.status: creating errors/spawn/Makefile
config.status: creating errors/topo/Makefile
config.status: creating errors/io/Makefile
config.status: creating errors/cxx/Makefile
config.status: creating errors/cxx/errhan/Makefile
config.status: creating errors/cxx/io/Makefile
config.status: creating errors/f77/Makefile
config.status: creating errors/f77/io/Makefile
config.status: creating errors/f77/io/addsize.h
config.status: creating errors/f77/io/iooffset.h
config.status: creating errors/f90/Makefile
config.status: creating errors/f90/io/Makefile
config.status: creating ckpoint/Makefile
config.status: creating ft/Makefile
config.status: creating manual/Makefile
config.status: creating manual/manyconnect
config.status: creating manual/mpi_t/Makefile
config.status: creating perf/Makefile
config.status: creating testlist
config.status: creating cxx/testlist
config.status: creating cxx/topo/testlist
config.status: creating f77/testlist
config.status: creating f90/testlist
config.status: creating threads/testlist
config.status: creating errors/testlist
config.status: creating errors/cxx/testlist
config.status: creating errors/f77/testlist
config.status: creating errors/f90/testlist
config.status: creating impls/testlist
config.status: creating impls/Makefile
config.status: creating impls/hydra/Makefile
config.status: creating impls/hydra/proc_binding.sh
config.status: creating impls/mpich/Makefile
config.status: creating impls/mpich/testlist
config.status: creating impls/mpich/mpi_t/Makefile
config.status: creating include/mpitestconf.h
config.status: executing depfiles commands
config.status: executing default-1 commands
config.status: executing default-2 commands
config.status: executing default-3 commands
config.status: executing default-4 commands
Configuration completed.
-------------- next part --------------
make all-recursive
make[1]: Entering directory '/home/pi/mpich-build'
Making all in /home/pi/mpich-build/src/mpl
make[2]: Entering directory '/home/pi/mpich-build/src/mpl'
CC src/mplstr.lo
CC src/mpltrmem.lo
CC src/mplenv.lo
CC src/mplsock.lo
CCLD libmpl.la
make[2]: Leaving directory '/home/pi/mpich-build/src/mpl'
Making all in /home/pi/mpich-build/src/openpa
make[2]: Entering directory '/home/pi/mpich-build/src/openpa'
Making all in src
make[3]: Entering directory '/home/pi/mpich-build/src/openpa/src'
make all-am
make[4]: Entering directory '/home/pi/mpich-build/src/openpa/src'
CC opa_primitives.lo
CC opa_queue.lo
CCLD libopa.la
make[4]: Leaving directory '/home/pi/mpich-build/src/openpa/src'
make[3]: Leaving directory '/home/pi/mpich-build/src/openpa/src'
Making all in test
make[3]: Entering directory '/home/pi/mpich-build/src/openpa/test'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/home/pi/mpich-build/src/openpa/test'
make[3]: Entering directory '/home/pi/mpich-build/src/openpa'
make[3]: Nothing to be done for 'all-am'.
make[3]: Leaving directory '/home/pi/mpich-build/src/openpa'
make[2]: Leaving directory '/home/pi/mpich-build/src/openpa'
Making all in src/mpi/romio
make[2]: Entering directory '/home/pi/mpich-build/src/mpi/romio'
make[3]: Entering directory '/home/pi/mpich-build/src/mpi/romio'
CC mpi-io/close.lo
CC mpi-io/delete.lo
CC mpi-io/file_c2f.lo
CC mpi-io/file_f2c.lo
CC mpi-io/fsync.lo
CC mpi-io/get_amode.lo
CC mpi-io/get_atom.lo
CC mpi-io/get_bytoff.lo
CC mpi-io/get_extent.lo
CC mpi-io/get_group.lo
CC mpi-io/get_info.lo
CC mpi-io/get_posn.lo
CC mpi-io/get_posn_sh.lo
CC mpi-io/get_size.lo
CC mpi-io/get_view.lo
CC mpi-io/iread.lo
CC mpi-io/iread_at.lo
CC mpi-io/iread_sh.lo
CC mpi-io/iwrite.lo
CC mpi-io/iwrite_at.lo
CC mpi-io/iwrite_sh.lo
CC mpi-io/open.lo
CC mpi-io/prealloc.lo
CC mpi-io/rd_atallb.lo
CC mpi-io/rd_atalle.lo
CC mpi-io/read.lo
CC mpi-io/read_all.lo
CC mpi-io/read_allb.lo
CC mpi-io/read_alle.lo
CC mpi-io/read_at.lo
CC mpi-io/read_atall.lo
CC mpi-io/read_ord.lo
CC mpi-io/read_ordb.lo
CC mpi-io/read_orde.lo
CC mpi-io/read_sh.lo
CC mpi-io/register_datarep.lo
CC mpi-io/seek.lo
CC mpi-io/seek_sh.lo
CC mpi-io/set_atom.lo
CC mpi-io/set_info.lo
CC mpi-io/set_size.lo
CC mpi-io/set_view.lo
CC mpi-io/wr_atallb.lo
CC mpi-io/wr_atalle.lo
CC mpi-io/write.lo
CC mpi-io/write_all.lo
CC mpi-io/write_allb.lo
CC mpi-io/write_alle.lo
CC mpi-io/write_at.lo
CC mpi-io/write_atall.lo
CC mpi-io/write_ord.lo
CC mpi-io/write_ordb.lo
CC mpi-io/write_orde.lo
CC mpi-io/write_sh.lo
CC mpi-io/glue/mpich/mpio_file.lo
CC mpi-io/glue/mpich/mpio_err.lo
CC mpi-io/mpich_fileutil.lo
CC mpi-io/mpir-mpioinit.lo
CC mpi-io/mpiu_greq.lo
CC mpi-io/mpiu_external32.lo
CC adio/ad_nfs/ad_nfs_read.lo
CC adio/ad_nfs/ad_nfs_open.lo
CC adio/ad_nfs/ad_nfs_write.lo
CC adio/ad_nfs/ad_nfs_done.lo
CC adio/ad_nfs/ad_nfs_fcntl.lo
CC adio/ad_nfs/ad_nfs_iread.lo
CC adio/ad_nfs/ad_nfs_iwrite.lo
CC adio/ad_nfs/ad_nfs_wait.lo
CC adio/ad_nfs/ad_nfs_setsh.lo
CC adio/ad_nfs/ad_nfs_getsh.lo
CC adio/ad_nfs/ad_nfs.lo
CC adio/ad_nfs/ad_nfs_resize.lo
CC adio/ad_nfs/ad_nfs_features.lo
CC adio/ad_testfs/ad_testfs_close.lo
CC adio/ad_testfs/ad_testfs_read.lo
CC adio/ad_testfs/ad_testfs_rdcoll.lo
CC adio/ad_testfs/ad_testfs_wrcoll.lo
CC adio/ad_testfs/ad_testfs_open.lo
CC adio/ad_testfs/ad_testfs_write.lo
CC adio/ad_testfs/ad_testfs_done.lo
CC adio/ad_testfs/ad_testfs_fcntl.lo
CC adio/ad_testfs/ad_testfs_iread.lo
CC adio/ad_testfs/ad_testfs_iwrite.lo
CC adio/ad_testfs/ad_testfs_wait.lo
CC adio/ad_testfs/ad_testfs_flush.lo
CC adio/ad_testfs/ad_testfs_seek.lo
CC adio/ad_testfs/ad_testfs_resize.lo
CC adio/ad_testfs/ad_testfs_hints.lo
CC adio/ad_testfs/ad_testfs_delete.lo
CC adio/ad_testfs/ad_testfs.lo
CC adio/ad_ufs/ad_ufs.lo
CC adio/ad_ufs/ad_ufs_open.lo
CC adio/common/ad_aggregate.lo
CC adio/common/ad_aggregate_new.lo
CC adio/common/ad_close.lo
CC adio/common/ad_coll_build_req_new.lo
gcc: internal compiler error: Killed (program cc1)
Please submit a full bug report,
with preprocessed source if appropriate.
See <https://github.com/archlinuxarm/PKGBUILDs/issues> for instructions.
Makefile:3409: recipe for target 'adio/common/ad_coll_build_req_new.lo' failed
make[3]: *** [adio/common/ad_coll_build_req_new.lo] Error 1
make[3]: Leaving directory '/home/pi/mpich-build/src/mpi/romio'
Makefile:4260: recipe for target 'all-recursive' failed
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory '/home/pi/mpich-build/src/mpi/romio'
Makefile:23946: recipe for target 'all-recursive' failed
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory '/home/pi/mpich-build'
Makefile:6857: recipe for target 'all' failed
make: *** [all] Error 2
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