[mpich-discuss] MPICH 3.1.4 with Slurm 14.11.9

[Guo, Yanfei]

Can you try using “—with-slurm=/usr/scheduler/slurm/lib” when you run ./configure?

Yanfei Guo
Postdoctoral Appointee
MCS Division, ANL







On 10/14/15, 3:21 PM, "Davide Vanzo" <vanzod at accre.vanderbilt.edu> wrote:

>Pavan,
>maybe you missed in the crowd of my previous email. Anyway, yes, the library is there:
>
>
>$ ls /usr/scheduler/slurm/lib
>libpmi2.a         libpmi.la        libslurmdb.la         libslurm.so.28
>libpmi2.la        libpmi.so        libslurmdb.so         libslurm.so.28.0.0
>libpmi2.so        libpmi.so.0      libslurmdb.so.28      slurm
>libpmi2.so.0      libpmi.so.0.0.0  libslurmdb.so.28.0.0
>libpmi2.so.0.0.0  libslurm.a       libslurm.la
>libpmi.a          libslurmdb.a     libslurm.so
>
>
>Davide
>
>
>
>
>On Wed, 2015-10-14 at 20:17 +0000, Balaji, Pavan wrote:
>
>
>
>Can you make sure you have SLURM's libpmi in the location you specified below (/usr/scheduler/slurm/lib)?
>
>
>  -- Pavan
>
>
>
>
>
>From: Davide Vanzo
>Reply-To: "discuss at mpich.org"
>Date: Wednesday, October 14, 2015 at 2:29 PM
>To: "discuss at mpich.org"
>Subject: [mpich-discuss] MPICH 3.1.4 with Slurm 14.11.9
>
>
>
>Hello all,
>I'm trying to compile MPICH 3.1.4 with GNU compilers 4.9.0 on a system with Slurm 14.11.9. I want to test the performance fall when using srun vs. mpiexec.hydra.
>I followed the guide and I added the slurm flags to configure as follows:
>
>
>
>
>./configure --with-device=ch3:nemesis --prefix=$PREFIX --enable-fortran=yes --enable-cxx --enable-shared --with-pmi=slurm --with-pm=no --with-slurm=/usr/scheduler/slurm
>
>
>
>
>The only compiler options I'm using are:
>
>
>MPICHLIB_xFLAGS="-O3 -march=corei7"
>
>
>
>
>MPICH builds correctly, but when I run make testing, I get the following error:
>
>
>
>
>( cd test && make  testing )
>make[1]: Entering directory `/gpfs22/local/centos6/mpich/3.1.4/nehalem/gcc49/ether/source/test'
>(NOXMLCLOSE=YES && export NOXMLCLOSE && cd mpi && make testing)
>make[2]: Entering directory `/gpfs22/local/centos6/mpich/3.1.4/nehalem/gcc49/ether/source/test/mpi'
>./runtests -srcdir=. -tests=testlist \
>-mpiexec=/usr/local/mpich/3.1.4/nehalem/gcc49/ether/bin/mpiexec -xmlfile=summary.xml \
>-tapfile=summary.tap -junitfile=summary.junit.xml
>Looking in ./testlist
>Processing directory attr
>Looking in ./attr/testlist
>Failed to build attrt; make[3]: Entering directory `/gpfs22/local/centos6/mpich/3.1.4/nehalem/gcc49/ether/source/test/mpi/attr'
>  CC       attrt.o
>  CCLD     attrt
>/usr/bin/ld: cannot find -lpmi
>collect2: ld returned 1 exit status
>make[3]: *** [attrt] Error 1
>make[3]: Leaving directory `/gpfs22/local/centos6/mpich/3.1.4/nehalem/gcc49/ether/source/test/mpi/attr'
>
>
>
>
>although /usr/scheduler/slurm/lib/libpmi.la exists.
>So I tried to explicitly use the lib and include path in the configure options: no luck.
>I also set "-L/usr/scheduler/slurm/lib" in the xFLAGS, but no effect.
>Any suggestion?
>Please let me know if I missed some information and thank you in advance for your help.
>
>
>Best regards,
>Davide
>
>
>-- 
>Davide Vanzo, PhD
>Application Developer
>Advanced Computing Center for Research and Education (ACCRE)
>Vanderbilt University - Hill Center 201
>www.accre.vanderbilt.edu <http://www.accre.vanderbilt.edu/>
>
>
>
>
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