[mpich-discuss] MPICH 3.1.4 with Slurm 14.11.9

[Kenneth Raffenetti]

What does the output of your "mpicc -show" look like?

On 10/14/2015 03:21 PM, Davide Vanzo wrote:
> Pavan,
> maybe you missed in the crowd of my previous email. Anyway, yes, the
> library is there:
>
> $ ls /usr/scheduler/slurm/lib
> libpmi2.a         libpmi.la        libslurmdb.la         libslurm.so.28
> libpmi2.la        libpmi.so        libslurmdb.so         libslurm.so.28.0.0
> libpmi2.so        libpmi.so.0      libslurmdb.so.28      slurm
> libpmi2.so.0      libpmi.so.0.0.0  libslurmdb.so.28.0.0
> libpmi2.so.0.0.0  libslurm.a       libslurm.la
> libpmi.a          libslurmdb.a     libslurm.so
>
> Davide
>
>
> On Wed, 2015-10-14 at 20:17 +0000, Balaji, Pavan wrote:
>>
>> Can you make sure you have SLURM's libpmi in the location you
>> specified below (/usr/scheduler/slurm/lib)?
>>
>>   -- Pavan
>>
>> From: Davide Vanzo
>> Reply-To: "discuss at mpich.org <mailto:discuss at mpich.org>"
>> Date: Wednesday, October 14, 2015 at 2:29 PM
>> To: "discuss at mpich.org <mailto:discuss at mpich.org>"
>> Subject: [mpich-discuss] MPICH 3.1.4 with Slurm 14.11.9
>>
>> Hello all,
>> I'm trying to compile MPICH 3.1.4 with GNU compilers 4.9.0 on a system
>> with Slurm 14.11.9. I want to test the performance fall when using
>> srun vs. mpiexec.hydra.
>> I followed the guide and I added the slurm flags to configure as follows:
>>
>>
>> ./configure --with-device=ch3:nemesis --prefix=$PREFIX
>> --enable-fortran=yes --enable-cxx --enable-shared --with-pmi=slurm
>> --with-pm=no --with-slurm=/usr/scheduler/slurm
>>
>>
>> The only compiler options I'm using are:
>>
>> MPICHLIB_xFLAGS="-O3 -march=corei7"
>>
>>
>> MPICH builds correctly, but when I run make testing, I get the
>> following error:
>>
>>
>> ( cd test && make  testing )
>> make[1]: Entering directory
>> `/gpfs22/local/centos6/mpich/3.1.4/nehalem/gcc49/ether/source/test'
>> (NOXMLCLOSE=YES && export NOXMLCLOSE && cd mpi && make testing)
>> make[2]: Entering directory
>> `/gpfs22/local/centos6/mpich/3.1.4/nehalem/gcc49/ether/source/test/mpi'
>> ./runtests -srcdir=. -tests=testlist \
>> -mpiexec=/usr/local/mpich/3.1.4/nehalem/gcc49/ether/bin/mpiexec
>> -xmlfile=summary.xml \
>> -tapfile=summary.tap -junitfile=summary.junit.xml
>> Looking in ./testlist
>> Processing directory attr
>> Looking in ./attr/testlist
>> Failed to build attrt; make[3]: Entering directory
>> `/gpfs22/local/centos6/mpich/3.1.4/nehalem/gcc49/ether/source/test/mpi/attr'
>>   CC       attrt.o
>>   CCLD     attrt
>> /usr/bin/ld: cannot find -lpmi
>> collect2: ld returned 1 exit status
>> make[3]: *** [attrt] Error 1
>> make[3]: Leaving directory
>> `/gpfs22/local/centos6/mpich/3.1.4/nehalem/gcc49/ether/source/test/mpi/attr'
>>
>>
>> although /usr/scheduler/slurm/lib/libpmi.la exists.
>> So I tried to explicitly use the lib and include path in the configure
>> options: no luck.
>> I also set "-L/usr/scheduler/slurm/lib" in the xFLAGS, but no effect.
>> Any suggestion?
>> Please let me know if I missed some information and thank you in
>> advance for your help.
>>
>> Best regards,
>> Davide
>>
>> --
>> Davide Vanzo, PhD
>> Application Developer
>> Advanced Computing Center for Research and Education (ACCRE)
>> Vanderbilt University - Hill Center 201
>> www.accre.vanderbilt.edu <http://www.accre.vanderbilt.edu/>
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