[mpich-discuss] mpich-3.2 34
Professor W P Jones
w.jones at imperial.ac.uk
Tue Jan 5 13:04:49 CST 2016
Hi Ken
I can send you the Makefile and output but the code has run successfully
using various other flavours of mpi and compilers - mpich2, openmpi,
intel mpi, gfortran and ifort etc. The example program pi3f90.f90
produces a similar error:
wpj at kelvin:f90 20 mpif90 pi3f90.f90
Encountered 0 errors, 0 warnings in file pi3f90.f90.
/usr/bin/ld: a.out: hidden symbol `lstat64' in
/usr/lib64/libc_nonshared.a(lstat64.oS) is referenced by DSO
/usr/bin/ld: final link failed: Nonrepresentable section on output
Regards
Bill
Professor W P Jones
Department of Mechanical Engineering
Imperial College London
Exhibition Road
London SW7 2AZ
Tel: +44 (0)20 7594 7037/7033
Mobile +44 (0)776 495 9702
Fax: +44 (0)20 7594 5702
E-mail: w.jones at imperial.ac.uk
web site: http://www.imperial.ac.uk/me
On 05/01/16 18:08, Kenneth Raffenetti wrote:
> Hi,
>
> Do you have a make log from the application you are trying to build
> that you can share?
>
> Separately, did the example cpi application build successfully at the
> end of the MPICH build?
>
> Ken
>
> On 01/05/2016 02:44 AM, Professor W P Jones wrote:
>> Hi
>>
>> I have successfully compiled and installed the version suggested.
>> However when I attempt to to use make to compile and link it fails on
>> the link step with the message:
>>
>> /usr/bin/ld: boffin: hidden symbol `lstat64' in
>> /usr/lib64/libc_nonshared.a(lstat64.oS) is referenced by DSO
>> /usr/bin/ld: final link failed: Nonrepresentable section on output
>> make: [boffin] Error 1 (ignored)
>> mv: cannot stat `./x86_64/boffin': No such file or directory
>> make: *** [boffin] Error 1
>>
>> The log files generated in the compiled and install are attached and
>> the output from mpiexec -info is:
>>
>> HYDRA build details:
>> Version: 3.2
>> Release Date: Mon Jan 4 00:00:40 CST
>> 2016
>> CC: icc
>> CXX: icpc
>> F77: lf95
>> F90: lf95
>> Configure options: '--disable-option-checking'
>> '--prefix=/opt/mpich' '--enable-fortran=all' 'FC=lf95' 'F77=lf95'
>> '--cache-file=/dev/null' '--srcdir=.' 'CC=icc' 'CFLAGS= -O2' 'LDFLAGS='
>> 'LIBS=-lpthread ' 'CPPFLAGS=
>> -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/mpl/include
>> -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/mpl/include
>> -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/openpa/src
>> -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/openpa/src
>> -D_REENTRANT
>> -I/usr/local/src/mpich-master-v3.2-42-g67631a5c0e9e/src/mpi/romio/include'
>>
>> 'MPLLIBNAME=mpl'
>> Process Manager: pmi
>> Launchers available: ssh rsh fork slurm ll lsf
>> sge manual persist
>> Topology libraries available: hwloc
>> Resource management kernels available: user slurm ll lsf sge pbs
>> cobalt
>> Checkpointing libraries available:
>> Demux engines available: poll select
>>
>> Regards
>> Bill
>>
>> Professor W P Jones
>> Department of Mechanical Engineering
>> Imperial College London
>> Exhibition Road
>> London SW7 2AZ
>> Tel: +44 (0)20 7594 7037/7033
>> Mobile +44 (0)776 495 9702
>> Fax: +44 (0)20 7594 5702
>> E-mail: w.jones at imperial.ac.uk
>> web site: http://www.imperial.ac.uk/me
>>
>> On 04/01/16 15:55, Kenneth Raffenetti wrote:
>>> Can you try the latest nightly tarball on the MPICH website? I
>>> committed a patch last night that I believe addresses the issue. I
>>> don't have a system with the lf95 compiler to test, so I just went
>>> from the documentation.
>>>
>>> Ken
>>>
>>> On 12/27/2015 07:49 PM, Professor W P Jones wrote:
>>>> Hi Pavan
>>>>
>>>> Here are all the existing log files.
>>>>
>>>> Regards
>>>> Bill
>>>>
>>>> Professor W P Jones
>>>> Department of Mechanical Engineering
>>>> Imperial College London
>>>> Exhibition Road
>>>> London SW7 2AZ
>>>> Tel: +44 (0)20 7594 7037/7033
>>>> Mobile +44 (0)776 495 9702
>>>> Fax: +44 (0)20 7594 5702
>>>> E-mail: w.jones at imperial.ac.uk
>>>> web site: http://www.imperial.ac.uk/me
>>>>
>>>> On 28/12/15 00:40, Balaji, Pavan wrote:
>>>>> Could you send us the log files listed in the README?
>>>>>
>>>>> http://git.mpich.org/mpich.git/blob/HEAD:/README.vin#l235
>>>>>
>>>>> -- Pavan
>>>>>
>>>>>> On Dec 27, 2015, at 5:34 AM, Professor W P Jones
>>>>>> <w.jones at imperial.ac.uk> wrote:
>>>>>>
>>>>>> Hi
>>>>>>
>>>>>> I am trying to build MPICH-3.2 34 using Lahey/Fujitsu Linux64
>>>>>> Fortran Express Release L8.10b and I obtain the following error:
>>>>>>
>>>>>> checking for Fortran 90 module output directory flag...
>>>>>> configure: error: FCMODOUTFLAG could not be determined but is
>>>>>> critical for the current Fortran build system
>>>>>>
>>>>>> Please can you advise how this can be fixed?
>>>>>>
>>>>>> Many thanks
>>>>>> Bill Jones
>>>>>>
>>>>>> --
>>>>>> Professor W P Jones
>>>>>> Department of Mechanical Engineering
>>>>>> Imperial College London
>>>>>> Exhibition Road
>>>>>> London SW7 2AZ
>>>>>> Tel: +44 (0)20 7594 7037/7033
>>>>>> Mobile +44 (0)776 495 9702
>>>>>> Fax: +44 (0)20 7594 5702
>>>>>> E-mail: w.jones at imperial.ac.uk
>>>>>> web site: http://www.imperial.ac.uk/me
>>>>>>
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